LOCUS       XM_039103232            3555 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol 4-kinase beta
            (Pi4kb), transcript variant X3, mRNA.
ACCESSION   XM_039103232
VERSION     XM_039103232.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103232.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3555
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3555
                     /gene="Pi4kb"
                     /gene_synonym="Pik4cb"
                     /note="phosphatidylinositol 4-kinase beta; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 33 ESTs, 1 long SRA read, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 20 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:81747"
                     /db_xref="RGD:621214"
     CDS             321..2873
                     /gene="Pi4kb"
                     /gene_synonym="Pik4cb"
                     /codon_start=1
                     /product="phosphatidylinositol 4-kinase beta isoform X2"
                     /protein_id="XP_038959160.1"
                     /db_xref="GeneID:81747"
                     /db_xref="RGD:621214"
                     /translation="MVISLEARSLAVAMGDMVVEPATLKPTSEPTPSPSGNNGGSLLS
                     VITEGVGELSVIDPEVAQKACQEVLEKVKLLHGGVAISSKGSPLELVNGDGVDNEIRC
                     LDDPPTEIREEEDEMEPGVVSGTAKGTRRRRQNNSAKQSWLLRLFESKLFDISMAISY
                     LYNSKEPGVQAYIGNRLFCFRNEDVDFYLPQLLNMYIHMDEDVGDAIKPYIVHRCRQS
                     INFSLQCALLLGAYSSDMHISTQRHSRGTKLRKLILSDELKPAHRKRELPTLSPAPDT
                     GLSPSKRTHQRSKSDATASISLSSNLKRTASNPKVENEDEELSSSTESIDNSFSSPVR
                     LAPEREFIKSLMAIGKRLATLPTKEQKTQRLISELSLLNHKLPARVWLPTAGFDHHVV
                     RVPHTQAVVLNSKDKAPYLIYVEVLECENFDTTNVPARIPENRIRSTRSVENLPECGI
                     THEQRAGSFSTVPNYDNDDEAWSVDDIGELQVELPEVHTNSCDNISQFSVDSITSQES
                     KEPVFIAAGDIRRRLSEQLAHTPTAFKRDPEDPSAVALKEPWQEKVRRIREGSPYGHL
                     PNWRLLSVIVKCGDDLRQELLAFQVLKQLQSIWEQERVPLWIKPYKILVISADSGMIE
                     PVVNAVSIHQVKKQSQLSLLDYFLQEHGSYTTEAFLSAQRNFVQSCAGYCLVCYLLQV
                     KDRHNGNILLDAEGHIIHIDFGFILSSSPRNLGFETSAFKLTTEFVDVMGGLNGDMFN
                     YYKMLMLQGLIAARKHMDKVVQIVEIMQQGCRRCSGASLSGPVVTVAQVICSQLPCFH
                     GSSTIRNLKERFHMSMTEEQLQLLVEQMVDGSMRSITTKLYDGFQYLTNGIM"
ORIGIN      
        1 gcctggtgca gccgccgcgg ccgctgtcag ggaagcgcag gcggccaatg gaacccggga
       61 gcggccgctg ctgctgaggc ggcggtgtcg gcagtccgac cccgaccgcc tgcaccccct
      121 ccgcgagggt cccccggagg attcctgtga ttccttaaaa ggaagggaaa ttgagctgac
      181 ctgcctgctt ggaagaagag ctgtagatca gatgatgctt aaaagccatt gtatgaaaat
      241 ctgagagcgt gttaggccac caggatttgt gtgaagcagt tcatatttat catgcgagga
      301 aaaagactga agaagcaata atggtgatta gcttggaagc tcgaagtctg gctgtagcca
      361 tgggagacat ggtagtggag cctgccaccc tgaagccaac ttctgagcct actcctagcc
      421 catcagggaa taacgggggc tccctactaa gcgtcatcac ggagggggtc ggggaactgt
      481 cagtgattga ccctgaggtg gcccagaagg cctgccagga ggtactggag aaagtcaagc
      541 ttttgcatgg aggtgtagcc atctctagca aaggcagccc actggagttg gttaatgggg
      601 atggtgtgga caatgagatc cgttgcctag atgatccacc taccgagatc agggaggaag
      661 aagatgagat ggagcctggt gtggtctctg gcacagccaa aggaacaaga agaagacgac
      721 agaacaactc agccaaacag tcttggctcc tgaggctgtt tgaatcaaaa ctatttgaca
      781 tctctatggc catttcatac ttgtataact ccaaggagcc gggagtgcaa gcctacattg
      841 gcaaccggct cttctgcttt cgcaatgagg atgtggactt ctatttgccc cagttgctta
      901 acatgtatat ccatatggat gaggatgtgg gtgatgccat taaaccctac atagtccacc
      961 gttgtcgcca gagcatcaac ttttccctcc agtgtgccct gttgcttggg gcctactctt
     1021 cagacatgca catttctact caacgacact cccgagggac caagttacgg aagctaatcc
     1081 tctcagatga gctgaagcca gctcaccgaa agagggagct gccaacttta agcccagccc
     1141 ctgacacagg actgtctccc tctaaaagga ctcaccagcg ctctaagtca gatgccacgg
     1201 ccagcataag tctcagcagc aacctgaaac gaacagccag caaccctaaa gtggagaatg
     1261 aggatgagga gctctcctcc agcaccgaga gtattgataa ttcattcagt tcccctgtcc
     1321 ggctggcccc tgagcgagaa ttcatcaagt ccttgatggc aatcggcaaa cggctggcca
     1381 cgctccccac taaagagcaa aaaacacaaa ggctgatctc agaactttcc ctgctcaacc
     1441 ataagctccc tgcccgagtc tggctgccca cagctggctt tgaccaccac gtggtccgtg
     1501 tgccccacac acaagctgtt gtcctcaatt ccaaggataa ggctccctac ctgatctatg
     1561 tggaagttct tgaatgtgaa aacttcgaca caactaatgt tcctgcccgg attcctgaaa
     1621 accgaattcg gagtacgagg tctgtggaga acctgccgga atgtggtatc actcacgagc
     1681 agcgggctgg cagcttcagc actgtgccca attatgacaa tgacgatgaa gcctggtcgg
     1741 tggatgacat aggcgagctg caggtggagc tcccagaagt gcacaccaac agctgtgaca
     1801 acatctctca gttctcggtg gacagcatca ccagccagga gagcaaggag cctgtgttca
     1861 ttgcggcagg ggacatcaga cggcgccttt cagaacagct ggctcacact cccacagcct
     1921 tcaaacgaga ccctgaagac ccttctgcag tcgccctcaa agagccctgg caggagaaag
     1981 tgcggaggat cagagaaggt tccccgtatg gccatcttcc caattggcga ctcctttcag
     2041 tcattgtcaa gtgtggagat gaccttcgcc aggagctgct ggctttccag gtgttgaaac
     2101 aactgcagtc catttgggaa caggagcgag tgcctctttg gatcaagcca tataagattc
     2161 ttgtgatttc agctgacagt ggcatgattg aaccagtagt caacgctgtg tccatccacc
     2221 aggtgaagaa acagtcacag ctctccttgc tcgattactt cctgcaggag catggcagtt
     2281 acaccactga ggcattcctc agtgcccagc gcaattttgt gcaaagttgt gctggctact
     2341 gcttggtctg ctacctatta caagtcaagg acaggcacaa tgggaacatc cttctggacg
     2401 cagaaggtca catcatccac atcgactttg gcttcatcct ttccagctca ccccgaaacc
     2461 tgggcttcga gacgtcagcc tttaagctga ccacagaatt tgtggatgta atgggcggcc
     2521 tgaacggtga tatgttcaac tactataaga tgctcatgct gcaagggctg atcgctgctc
     2581 gcaaacacat ggacaaggtg gtacagattg tggagatcat gcagcaaggt tgccgacgtt
     2641 gctcaggagc atctctgtct ggccccgtgg tgacggtggc tcaggtcatc tgttctcagc
     2701 ttccttgctt ccatggctcc agcaccattc gcaacctcaa agagaggttc cacatgagca
     2761 tgactgagga gcagctgcag ctgctggtgg agcagatggt ggacggcagc atgaggtcca
     2821 tcaccaccaa actctacgat ggcttccagt acctcaccaa tggcatcatg tgacaccact
     2881 ttcaggccca gaagtggtgg gattgaaggc accctcctta ggaggaccct tgcctaagaa
     2941 aacctaaatc acaaaatccc acctacctaa ccacctaccc aagggaaatg gaaggcaaaa
     3001 aacacaaagg atcatgtggt aaccatgaga gctggccaaa gggtaggaga gccaaccatg
     3061 gggtccagac ttgctggggc ttccccacct cttgctgtgt cagtattgcc acctgacaga
     3121 tcccaggact cactgccctc cagagaacag agatgatgaa catgaggagg actggaacct
     3181 tcttcccctc ggggatctca gaggttttct acaaaaccat cttttacttt ccctgggtcc
     3241 cagcaagatg ggaggagtgg gttcttggta cttaggactt aatcctatgt ttggccatgc
     3301 tgctgcccaa ctctgtcccc atctgggggc tgacccctag cccacattcc cgacaggtgg
     3361 gtcctgcact tgcttaggtt ccccatcatg ggggtaagga agggaactga cacgatccct
     3421 ctaatatatt gagggtattg gcttagccat ggggaaattt ctcaccctga tcctttcctc
     3481 acacccaggg aaatagctct catttttttt ttttaatttt taatttttgt ttgaaataaa
     3541 gtccttagtt agcca
//
