LOCUS       NM_001013081            1346 bp    mRNA    linear   ROD 02-JUN-2024
DEFINITION  Rattus norvegicus phytanoyl-CoA dioxygenase domain containing 1
            (Phyhd1), mRNA.
ACCESSION   NM_001013081 XM_216026
VERSION     NM_001013081.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1346)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1346)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC091389.1.
            
            On Apr 20, 2005 this sequence version replaced XM_216026.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091389.1, FQ219402.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132307, SAMEA5756307
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1346
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..1346
                     /gene="Phyhd1"
                     /note="phytanoyl-CoA dioxygenase domain containing 1"
                     /db_xref="GeneID:296621"
                     /db_xref="RGD:1310377"
     exon            1..74
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
     CDS             42..917
                     /gene="Phyhd1"
                     /codon_start=1
                     /product="phytanoyl-CoA dioxygenase domain-containing
                     protein 1"
                     /protein_id="NP_001013099.1"
                     /db_xref="GeneID:296621"
                     /db_xref="RGD:1310377"
                     /translation="MACLSPSQLKKFQEDGFLLLEGFFTADECVVMQQRIGEIVAEMD
                     VPLHCRTEFSTQEDEQLQTQGNTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINK
                     IGHALHAHDPVFRSITHSPKVQALVRSLGLQIPVVVQSMYIFKQPHFGGEVSPHQDAT
                     FLYTEPLGRVLGLWIATEDAMLENGCLWFIPGSHTSGVSRRMIRAPSDSGPGTSFLGS
                     EPAWDNNLFVPLPVRRGGLVLIHGEVVHKSEQNLSDHSRQAYTFHLMEAAGTVWSPGN
                     WLQPTTELPFPPLYI"
     exon            75..233
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
     exon            234..309
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
     exon            310..357
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
     exon            358..413
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
     exon            414..476
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
     exon            477..498
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
     exon            499..627
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
     exon            628..744
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
     exon            745..871
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
     exon            872..1262
                     /gene="Phyhd1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagccatcga gctgagacag cagagtcctg cagcattgcc catggcctgc ctgagtccct
       61 cacaactcaa gaagttccag gaggacgggt ttctgctgtt ggaaggattc ttcacagcag
      121 acgagtgtgt ggtcatgcag cagaggattg gtgagattgt ggctgagatg gacgtccctc
      181 tgcactgccg gacagaattt tccacccagg aagatgagca gcttcaaact cagggcaaca
      241 cggactactt cttgagcagt ggtgacaaga tcagattctt ctttgaaaaa ggcgtttttg
      301 atgagaaagg aaatttcttg gttcctccag agaaatctat caacaaaatt ggccatgctc
      361 tgcatgccca tgaccctgtc ttcaggagca tcacacactc tcccaaggtg caggctttgg
      421 tcagaagtct gggcctccag ataccagtgg tggtacagag catgtatatc tttaagcaac
      481 ctcactttgg cggcgaagtc tcccctcacc aggacgctac cttcctgtac acggagcctc
      541 taggccgagt gctgggcctg tggattgcaa cggaggatgc catgctggag aacggttgcc
      601 tctggttcat ccctggctcc cacaccagtg gggtgtcaag aaggatgatc cgagcccctt
      661 cggactctgg gcctggcacc agcttcctcg ggtcggagcc agcctgggat aacaacctct
      721 ttgtgccttt gccagtgagg agagggggtc tggtcctgat ccacggagaa gtggtgcaca
      781 agagtgagca gaacctttcc gaccactcac gccaggccta cactttccac ctcatggagg
      841 ccgccggcac tgtctggagc ccagggaact ggcttcagcc cacgactgag ctgcccttcc
      901 caccactcta catctaaagg ccctggcaga gcagggctgg tgagggtccc ccaccctcag
      961 ccccaatgct accaacacca gggcctctgg ctgcaaccaa gcgcgcatct tcttgtatgg
     1021 ctttctttct gatgttgtct gtgaccttgg tccaccagac agggagccaa gaagcagaaa
     1081 tgactgagca ggagcccaag ctcggggaga ggagggactt cctctaaaat tttctctctc
     1141 tacaccttcc tgttccaacc cagctttctg aagtgtccac tcggcagtga aaggattcac
     1201 ttgggttttc tcttggatgg gtgtttctgt gtcaggcact gaataaaggc aacttaaaat
     1261 ataaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1321 aaaaaaaaaa aaaaaaaaaa aaaaaa
//
