LOCUS       NM_001106577            4790 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus putative homeodomain transcription factor 2
            (Phtf2), mRNA.
ACCESSION   NM_001106577 XM_001063257 XM_039107247 XM_238334
VERSION     NM_001106577.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4790)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On or before Jul 23, 2021 this sequence version replaced
            XM_039107247.1, NM_001106577.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1863493.1,
                                           SRR26643292.16412.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                JAXUCZ010000004.1  15107435-15107524
            91-170              JAXUCZ010000004.1  15132111-15132190
            171-227             JAXUCZ010000004.1  15162149-15162205
            228-297             JAXUCZ010000004.1  15168262-15168331
            298-456             JAXUCZ010000004.1  15170294-15170452
            457-622             JAXUCZ010000004.1  15172476-15172641
            623-787             JAXUCZ010000004.1  15173783-15173947
            788-974             JAXUCZ010000004.1  15186118-15186304
            975-1130            JAXUCZ010000004.1  15189136-15189291
            1131-1349           JAXUCZ010000004.1  15196172-15196390
            1350-1478           JAXUCZ010000004.1  15204147-15204275
            1479-1751           JAXUCZ010000004.1  15206081-15206353
            1752-1883           JAXUCZ010000004.1  15206527-15206658
            1884-1970           JAXUCZ010000004.1  15208061-15208147
            1971-2126           JAXUCZ010000004.1  15214158-15214313
            2127-2222           JAXUCZ010000004.1  15215723-15215818
            2223-2348           JAXUCZ010000004.1  15219510-15219635
            2349-4790           JAXUCZ010000004.1  15220242-15222683
FEATURES             Location/Qualifiers
     source          1..4790
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q11"
     gene            1..4790
                     /gene="Phtf2"
                     /note="putative homeodomain transcription factor 2"
                     /db_xref="GeneID:296762"
                     /db_xref="RGD:1310593"
     exon            1..90
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            91..170
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             126..2369
                     /gene="Phtf2"
                     /codon_start=1
                     /product="protein PHTF2"
                     /protein_id="NP_001100047.2"
                     /db_xref="GeneID:296762"
                     /db_xref="RGD:1310593"
                     /translation="MASRVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTA
                     HVKPDLIDVDLVRGSAFAKAKPESPWTALTRKGIVRVVFFPFFFRWWLQVTSKVIFSW
                     LLVLYLLQVAAIVLFCSAPSPHSIPLTEVIGPVWLMLLLGTVHCQIVSTRTPKPPLST
                     GGKRRRKLRKAAHLEVHREGDGSSTTDNTQEGTVQSPGAGAPYSVGSVFRDLWHAAFL
                     LSGSKKTKNSIDKSTETDNGYVSLDGKRTVKSSEDGAQDHEPQCETIRPEDTAWATRT
                     PRSVPAKDAQRKITNVSDEVSSEEGPETGYPSRCHGDRTSESGLRNRKPHHYKKHYAN
                     EDAPKSGTSCSSRCSSSRQDSESTRPESETEDVLWEDLLHCAECRSSCTSETDVGNPQ
                     INPCGKKEYRDDPFHQTHLPWLHSSHPGLEKISAIVWEGNDCKKADMSVLEISGMIMN
                     RVNNHVPGIGYQIFGNAVSLILGFTPFVFRLSQATDLEQLTAHSASELYVIAFGSNED
                     FMVLSMVLISFVVRVSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPH
                     FRLKKVQNIKMWLSLRSYLKRRGPQRSVDVIVSSAFLLTISVVFVCCAQLLHVHEIFL
                     DCHYNWELAIWCISLSLFLLRFVTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKE
                     ELTLVNNVLKLATKLLKELDSPFRLYGLTMNPLLYNITQVVILSAVSGVISDLLGFNL
                     KLWKIKS"
     exon            171..227
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            228..297
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            298..456
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            457..622
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            623..787
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            788..974
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1130
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1131..1349
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1350..1478
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1479..1751
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1752..1883
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1884..1970
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1971..2126
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2127..2222
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2223..2348
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2349..4790
                     /gene="Phtf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtagcacttc gggctccagc ggcggcgcta gccttcgaga ctctgcgcgt ctcctagccg
       61 cttcccagcg gcgcggcgcc ggcggctaag cgtaaaatga cgaatgagta atttcaatgg
      121 aataaatggc gtccagagtc acagatgcta tagtctggta tcagaagaag atcggagcct
      181 atgatcaaca aatatgggaa aagtctgttg aacaaagaga aatcaagggc ttaaggaata
      241 aaccaaagaa aacagcacat gtgaaaccag acctcatcga cgttgatctt gtgagagggt
      301 ctgcatttgc taaggcaaag cctgaaagtc cttggacggc tctgactaga aaagggattg
      361 ttcgagttgt gtttttcccc ttcttcttcc ggtggtggct acaagtgaca tcgaaggtca
      421 tcttctcctg gcttcttgtt ctctatcttc ttcaagttgc tgcaatagtg ttattctgtt
      481 ccgcccctag cccgcatagc atacctctaa ctgaagtgat tgggccagta tggctgatgc
      541 tgctgctggg aactgtgcat tgccagatcg tgtcaacgag aacacccaaa cctcctctaa
      601 gcacaggcgg taaaagaaga aggaaattaa ggaaagcagc ccatttggag gtccacaggg
      661 aaggagacgg ttctagcacc acagacaaca cccaggaggg aacggtgcag agtcccggcg
      721 caggcgcccc ttacagtgtg ggctcggtct tcagagatct ctggcacgcg gccttcctct
      781 tatcagggtc aaagaagaca aagaattcca ttgataagtc aactgagact gacaatggct
      841 atgtgtccct ggatgggaag aggactgtaa aaagcagcga ggatggagca caggaccatg
      901 agcctcagtg tgaaaccatt cggccagaag acaccgcctg ggccacacga acgccgagga
      961 gtgttcctgc caaagatgcc caaagaaaga taacaaatgt ctctgatgaa gtatccagtg
     1021 aggagggtcc tgaaacagga tacccatcac gctgtcatgg ggacagaact tccgaaagcg
     1081 gtcttcgaaa tagaaagcca caccattata aaaagcatta cgcaaatgag gatgccccta
     1141 aatcgggtac tagttgcagc tctcgctgtt caagttccag acaggattct gagagcacaa
     1201 ggccagaatc tgaaactgaa gatgtattat gggaagactt gttacattgt gcagaatgcc
     1261 gctcctcctg taccagtgag acagatgtgg gaaatcctca gataaatcca tgtgggaaaa
     1321 aagaatatag agacgaccct ttccatcaga ctcatttacc ctggcttcat agttcccacc
     1381 cgggattaga aaaaatcagt gctatagtgt gggaaggcaa tgactgtaag aaagcagaca
     1441 tgtccgtact tgaaatcagt gggatgatca tgaacagagt gaacaaccac gtaccgggca
     1501 tagggtacca gatctttgga aatgctgtct ccctgatcct gggcttcacc ccatttgttt
     1561 tccgactgtc acaagccaca gacttggagc agctcacagc ccactctgcc tcagaacttt
     1621 atgtgattgc atttggctcg aacgaagatt tcatggttct gtctatggtc ctgataagtt
     1681 ttgtggttcg cgtgtctctt gtatggatct tcttctttct gctgtgtgta gcagagagaa
     1741 catataagca acgattactc tttgcaaaac tctttggaca tttgacatct gcaaggagag
     1801 ctcggaaatc tgaggttcct catttccggt tgaagaaagt acagaatata aaaatgtggc
     1861 tgtctctccg ttcctatctt aagcgccgag gccctcagcg gtccgtggat gtcatcgtct
     1921 catccgcctt cttactgaca atctccgtcg tgttcgtctg ctgtgctcag ctgctccacg
     1981 tgcatgagat cttcctcgac tgtcactaca actgggagct ggcgatctgg tgcatctccc
     2041 tgtcactgtt tctcctgagg tttgtcactc tcggatcaga aaccagcaaa aaatacagca
     2101 atacctcaat attactcaca gagcagataa acctctactt gaaaatggag aagaaaccta
     2161 acaagaagga ggagctgacc cttgtgaaca atgttttaaa gctggctact aagctactaa
     2221 aggagctgga cagtcccttc aggttgtacg gactcacaat gaacccactg ctatacaaca
     2281 tcacccaggt tgtcatcctg tcagctgtct ccggtgtcat aagtgacttg cttggattta
     2341 atttaaagct gtggaagatc aaatcatgac agttgagaga actggagatg tagcccagtg
     2401 gccagaacat gagtgctgat ggagcggtcg ctgatctgct ccaggagtct gctgggaacg
     2461 aagtgtttac atcagactgt attgtgcaat tcttatattt attttacgtg ttcactggtt
     2521 ttgttctgtt ttgttgtatg tgtgtttgtt ttctttcttt ttttcttttt aaacatttag
     2581 tccgttttaa gcattgaagt tcttaattgt tgaaagggtg gcaaaactga tccagatacc
     2641 tgaggtcctg gtaattgtta acaagtaact gaccaacaga ttgtgaaaac agaagccatc
     2701 actaagcact atttcttcat caatgccgtg aacttgcctt acttgaggaa aacgtcttta
     2761 actctgaaat agtgcattgg tctaagctaa acacattttc tctggtaaac caggatccac
     2821 tcaggaccgc tcttgaagta atttcagaac agtcctggga tgcagactga gtaagctgca
     2881 gtggatgcgc ccttcagtat taatatatag tattatgtaa caggtcaaca agtgctcttt
     2941 cacgataaac tcttaacgga gcaataatcg taaatggtta ccatactgta aaatattttg
     3001 ataagaatta attagtaata agtgtattta tttaaacact gggctgtttg cacagctccg
     3061 actgtgcatg ctcaaatgtg cactttttaa aatggttcct ttgggtgtat gtctcacgtg
     3121 gatatgcgac agtgtaccag ggcgtaatat ggtatccttt tgagtgaggt ccgtcctcat
     3181 ctcacaagtg aagtgcctac tgttattact aaagtgcgtt acgtttactc tagaattccc
     3241 catggtacac tctagcgtat gctgttccta ccacacttaa agcttaagaa tcaagttaag
     3301 aaccaacaga atatttatct gattgctagt tataaaattt ccaaattttc caaaaagaca
     3361 gcttcagcct accagttcta gcctccaaat ttaatctggt gcaccccttc ccagctccat
     3421 gacgtaaggg ctatttttag acgcttttaa catggaaagc tagctgctct cccctccggt
     3481 aactggccaa gcgtgcggtg ggagctatca tgtttcccct tggtaaatag ggcagatatg
     3541 atagtcccta tgtctggcct tcatcctaag tcgttacatt tgtacaatca gtagtgtttt
     3601 aagaattaca tgaaacaaaa tgtttttctg attttttttt ttgttttgtt ttgtttaagc
     3661 caagcatttg gtttctaaaa caaagaaatt atttgaaaca atctagggtt ttcttggtgc
     3721 aaagtcatac tgaatatatt catattttta acatatttta tggtctttaa aataattaat
     3781 tgtaaataat ttatttgatt ggtgcagttc taattcccaa atcactttta aaatcaggaa
     3841 tgtgtagcga gcagagccat gtgttaaatg tttctcttcc cattcctttg agcagcctca
     3901 gttaagcctc actgtagagg gctctttgta taggaaacag cagacagcgt tgtgttccgt
     3961 ttgcctgttc taagacgtcc cataatgacc aaagtgcatt ctgagtgttg ttcaaggaat
     4021 gtattgctgg agctttaaga acacacttag tttcccatgt gaagaattag gctttgtctc
     4081 atatgtttct tccttcctat tgtctaatgt tgaggttgtt tttaggcact atattttata
     4141 aactttttca aaataaggta catacctata cagaacttaa cattttgcac agagtatatc
     4201 aaatatattt tgagaataaa aaagtacagc atgagttctg ttaggaataa agtgagatta
     4261 ttgtatcttt aaaaaaaact tatttcaagt tggaagtatt tttgagccaa ctagctgaga
     4321 atcctgactt aggaacatgc ttgctttagg tcacagttgt gtttgctgta gttggggtcg
     4381 attgtacagt atacctgtca gaacatgatg tatcggtcgt gccgttagca tgggcagcag
     4441 tagaatacta aaagcaaagt gtgttaagca gcttcgtaat gttcccagag ccatttcaga
     4501 gtagtgagtg acagccctgc ctgtacagac accgtggatg taagaagttg aaatgtaacc
     4561 aatcacatca tagagaagaa gcaactcgga ggcacaatca tggcggatgc tgtgtgctgt
     4621 ttctttgctg cgtgttttta aaagtttgaa cagcaagttt aaaataaaac attctaaggc
     4681 tgatttgtgt gtgttatttt aagttacatg tgtgggttga tttttgtatt tactgtaata
     4741 taaaccctag ttacaacctt tagacagggg cggtgaaaat aaagttttaa
//
