LOCUS       NM_001191102            2792 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus putative homeodomain transcription factor 1
            (Phtf1), mRNA.
ACCESSION   NM_001191102 XM_001073852
VERSION     NM_001191102.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2792)
  AUTHORS   Oyhenart,J., Dacheux,J.L., Dacheux,F., Jegou,B. and Raich,N.
  TITLE     Expression, regulation, and immunolocalization of putative
            homeodomain transcription factor 1 (PHTF1) in rodent epididymis:
            evidence for a novel form resulting from proteolytic cleavage
  JOURNAL   Biol Reprod 72 (1), 50-57 (2005)
   PUBMED   15342352
  REMARK    GeneRIF: PHTF1 is present in the proximal part of the epididymis
            and it appears when the rats reach 4 wk of age, the 56-kDa PHTF1
            epididymal form could result from proteolytical processing.
REFERENCE   2  (bases 1 to 2792)
  AUTHORS   Oyhenart,J., Le Goffic,R., Samson,M., Jegou,B. and Raich,N.
  TITLE     Phtf1 is an integral membrane protein localized in an endoplasmic
            reticulum domain in maturing male germ cells
  JOURNAL   Biol Reprod 68 (3), 1044-1053 (2003)
   PUBMED   12604659
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Jul 17, 2010 this sequence version replaced XM_001073852.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1374269.1,
                                           SRR26360176.1823774.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-68                JAXUCZ010000002.1  194161679-194161746
            69-125              JAXUCZ010000002.1  194162357-194162413
            126-195             JAXUCZ010000002.1  194175538-194175607
            196-354             JAXUCZ010000002.1  194176665-194176823
            355-511             JAXUCZ010000002.1  194179566-194179722
            512-646             JAXUCZ010000002.1  194181299-194181433
            647-806             JAXUCZ010000002.1  194182456-194182615
            807-980             JAXUCZ010000002.1  194184824-194184997
            981-1070            JAXUCZ010000002.1  194185105-194185194
            1071-1292           JAXUCZ010000002.1  194187743-194187964
            1293-1421           JAXUCZ010000002.1  194190250-194190378
            1422-1694           JAXUCZ010000002.1  194191286-194191558
            1695-1826           JAXUCZ010000002.1  194192359-194192490
            1827-1913           JAXUCZ010000002.1  194192956-194193042
            1914-2069           JAXUCZ010000002.1  194196168-194196323
            2070-2165           JAXUCZ010000002.1  194197168-194197263
            2166-2291           JAXUCZ010000002.1  194198414-194198539
            2292-2792           JAXUCZ010000002.1  194200007-194200507
FEATURES             Location/Qualifiers
     source          1..2792
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..2792
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /note="putative homeodomain transcription factor 1"
                     /db_xref="GeneID:252962"
                     /db_xref="RGD:620426"
     exon            1..68
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..2312
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /codon_start=1
                     /product="protein PHTF1"
                     /protein_id="NP_001178031.1"
                     /db_xref="GeneID:252962"
                     /db_xref="RGD:620426"
                     /translation="MASNERDAISWYQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMG
                     HIKPDLIDVDLIRGSTFAKAKPEIPWTSLTRKGLVRVVFFPLFSSWWIQVTSLRIFVW
                     LLLLYLMQVTAIVLYLMMPIVSVSEVLGPLCLMLLMGTVHCQIVSTQITRPSGNNGNR
                     RRRKLRKTVNGDGTRDNGNNSPDKIRAVETLDSAPSVGGFWGTLFGNRIKRVKLVSNK
                     GTETDNDSGCFHPIIKKRQGRPEIRMWQAREKAKVSDGEKCRREAYRRLGNGVSDDLS
                     SEEDGEARTQMILLRRSVEGASSDNGCEVKNRKSILSRHLNSQVKKTATRWCHIVRDS
                     DSLAESEFESAAFSQGSRSGMSGGSRSLNLSRRDSESTRHDSETEDMLWDDLLHGPEC
                     RSSVTSDSEGAHVNTLHSGTKRDPKEDVFQQNHLFWLQNSSPASERVSAIIWEGNECK
                     KMDMSVLEISGIIMSRVNAYEQGVGYQMLGNAVTIGLALFPFLYRLFREKSFDQLKSI
                     SAEEVLTLFCGAPPVTPVVILSIINFFERLCLTWIFFFMMCVAERTYKQRFLFAKLFS
                     HITSARKARKYEIPHFRLKKVENIKIWLSLRSYLKRRGPQRSVDVVVSSVFLLTLSIA
                     FICCAQVLQGHKTFLNDAYNWEFLIWETALLLFLLRLASLGSETNKKYSNVSILLTEQ
                     INLYLKMEKKPNKKEQLTLVNNVLKLSTKLLKELDTPFRLYGLTMNPLIYNITRVVIL
                     SAVSGVISDLLGFNIRLWKIKS"
     exon            69..125
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            126..195
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            196..354
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            355..511
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            512..646
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            647..806
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            807..980
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            981..1070
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            1071..1292
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            1293..1421
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            1422..1694
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            1695..1826
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            1827..1913
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            1914..2069
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            2070..2165
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            2166..2291
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
     exon            2292..2792
                     /gene="Phtf1"
                     /gene_synonym="Phtf"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcactctctg gctggagaga cagatggcct caaatgagag agatgctata tcatggtatc
       61 agaagaagat tggagcatat gatcagcaga tatgggaaaa gtcaatcgaa cagactcaga
      121 ttaagggttt caaaaacaaa ccaaaaaaaa tgggccatat aaaaccagac ttgattgatg
      181 ttgacttaat cagaggctca acatttgcca aagccaagcc tgagattcca tggacgtcgc
      241 tcactcggaa gggccttgtt cgagtggtgt ttttcccatt attcagcagt tggtggattc
      301 aggttacctc tctcagaatc tttgtttggt tgctgctact gtacctcatg caagttacag
      361 cgatcgtttt atatctcatg atgcctattg tgagcgtgag tgaagtgctt ggaccattgt
      421 gccttatgct actcatggga actgtccact gtcagatcgt gtcaactcag ataacaaggc
      481 cctcaggaaa caatggaaat cggagaagaa gaaaattacg aaaaactgta aatggtgatg
      541 ggacccgaga taatggaaat aactcccctg ataaaatcag agcagtagaa actctggact
      601 ctgcacccag tgttggtggt ttttggggga ctctctttgg caacaggatt aaaagggtga
      661 aattagtatc taacaaaggg actgaaactg acaatgactc aggctgtttc catcctatca
      721 ttaagaagag acagggtcga ccagagatca gaatgtggca agcaagagag aaagcgaagg
      781 tttcggatgg agaaaagtgc cgtagggagg cttataggcg tttgggtaat ggcgtttcag
      841 acgatctgtc aagtgaggag gatggtgaag cacggaccca gatgatatta ctgcgtagga
      901 gtgtggaagg ggcctcaagt gacaatggct gtgaagttaa gaacagaaaa tcaatacttt
      961 caaggcacct aaattctcag gtaaagaaaa ccgcgacaag gtggtgtcat atagttcggg
     1021 attcagatag tctggctgaa tcagaatttg aatcagcagc cttcagccag ggttctaggt
     1081 ctggtatgag cggtggctct cggagcctta acttgtcaag aagagactca gaaagcaccc
     1141 gacatgactc agagacggag gatatgttat gggatgacct tctccatggc ccagagtgcc
     1201 ggtcatctgt caccagtgac agtgaggggg ctcatgtaaa tacccttcat tcagggacca
     1261 aacgtgaccc caaagaagac gtttttcagc agaaccattt attctggctt cagaattcaa
     1321 gtcctgcctc tgagcgagtt agtgcgataa tctgggaagg aaacgagtgc aaaaagatgg
     1381 atatgtctgt gttagagata agcggcatca tcatgagcag ggtgaatgca tatgagcaag
     1441 gtgttggcta tcagatgctg gggaatgcag tcaccattgg cttagcgctt ttcccgtttt
     1501 tatatcgact cttccgagag aagagctttg accaactaaa gtccatttca gcagaggagg
     1561 tcctgaccct tttctgtggt gcgcctcccg tcacacctgt tgttattttg tctataatta
     1621 atttttttga aagattgtgt cttacgtgga tatttttttt catgatgtgt gtggcagaga
     1681 gaacatataa gcagagattt ttatttgcaa aactcttcag ccatattact tctgccagga
     1741 aagccaggaa atatgaaata cctcatttca gacttaaaaa ggtggagaac attaaaatat
     1801 ggttatcact gcgctcctat ctaaagagac ggggtccaca gcgctcagtg gatgtggtcg
     1861 tgtcctccgt cttcttgctg acactttcaa tagctttcat ttgttgtgca caggttcttc
     1921 agggtcacaa gacattcctg aatgatgctt acaactggga gttcttgatc tgggaaacag
     1981 cactgctgct tttcttgctt cgcctggcct cactgggctc agaaaccaac aagaaatata
     2041 gcaatgtttc catcctgctt actgaacaga ttaatttata tcttaaaatg gaaaaaaagc
     2101 caaataagaa agaacagctc accctggtaa acaatgtact gaagttgtcc accaagttgt
     2161 taaaggagct ggacacacca tttagactct acggactgac catgaacccc ttaatctaca
     2221 acatcacaag agtagtcatc ctttctgctg tctctggggt tataagcgat cttctaggat
     2281 tcaacatcag actatggaaa attaagtcct gagctgagat gtgcgcctgg actcttttct
     2341 tggctgctgt cattgctcac ccactgagga caaagatggc tcacagaaac cagtgacccc
     2401 acctgcaggc tcacgtgcag tctaactcag cccagactaa cgaatggagt ttctgcacat
     2461 cctttccctg ggcacgtgtt aaaaacctgc actttcatgg ttctcaagca acatgaatag
     2521 tcagcaaact aaagcctgcc tcacagagac tcgggactgt ttcgtgagtc aggacattta
     2581 tcttggagcc tccggtactg tgctagttat atttactgta aatagtcttt tgggtaacca
     2641 tggcagatgc ccaaagcatg aagcaactat cttttattgg aaatatgcaa atgcagtact
     2701 tttctattat agtctatgga ttggggattt ctctatcaaa aggagagaaa ctattttagg
     2761 ttgaatccaa ataaaagaac tttactagaa aa
//
