LOCUS       NM_001401353            5303 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus PHD and ring finger domains 1 (Phrf1), mRNA.
ACCESSION   NM_001401353 XM_006230516
VERSION     NM_001401353.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5303)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   2  (bases 1 to 5303)
  AUTHORS   Yuryev,A., Patturajan,M., Litingtung,Y., Joshi,R.V., Gentile,C.,
            Gebara,M. and Corden,J.L.
  TITLE     The C-terminal domain of the largest subunit of RNA polymerase II
            interacts with a novel set of serine/arginine-rich proteins
  JOURNAL   Proc Natl Acad Sci U S A 93 (14), 6975-6980 (1996)
   PUBMED   8692929
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Feb 9, 2022 this sequence version replaced XM_006230516.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.5016.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-100               JAXUCZ010000001.1  205763565-205763664
            101-216             JAXUCZ010000001.1  205766097-205766212
            217-339             JAXUCZ010000001.1  205767254-205767376
            340-545             JAXUCZ010000001.1  205771748-205771953
            546-629             JAXUCZ010000001.1  205774907-205774990
            630-757             JAXUCZ010000001.1  205777913-205778040
            758-855             JAXUCZ010000001.1  205781453-205781550
            856-1031            JAXUCZ010000001.1  205781821-205781996
            1032-1161           JAXUCZ010000001.1  205782992-205783121
            1162-1289           JAXUCZ010000001.1  205789090-205789217
            1290-1471           JAXUCZ010000001.1  205790283-205790464
            1472-1591           JAXUCZ010000001.1  205790591-205790710
            1592-1746           JAXUCZ010000001.1  205791113-205791267
            1747-4422           JAXUCZ010000001.1  205791775-205794450
            4423-4577           JAXUCZ010000001.1  205794703-205794857
            4578-4832           JAXUCZ010000001.1  205795031-205795285
            4833-4961           JAXUCZ010000001.1  205795516-205795644
            4962-5303           JAXUCZ010000001.1  205796137-205796478
FEATURES             Location/Qualifiers
     source          1..5303
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..5303
                     /gene="Phrf1"
                     /note="PHD and ring finger domains 1"
                     /db_xref="GeneID:245925"
                     /db_xref="RGD:708360"
     exon            1..100
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            101..216
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..5105
                     /gene="Phrf1"
                     /note="CTD-binding SR-like protein rA9"
                     /codon_start=1
                     /product="PHD and RING finger domain-containing protein 1"
                     /protein_id="NP_001388282.1"
                     /db_xref="GeneID:245925"
                     /db_xref="RGD:708360"
                     /translation="MDDDNLDELVAHSPGPDGPPQVGSSELASDAEESSNGHSEDSED
                     DTGSEQDDDTDGEETEGLSEEEDPEDRSGSEDSEDGIEVPTAAVETQRKLEASSTPNS
                     DDDAESCPICLNAFRDQAVGTPETCAHYFCLDCIIEWSRNANSCPVDRTIFKCICIRA
                     QFNGKILKKIPVENTRACEDEEAEEEDPTFCEVCGRSDREDRLLLCDGCDAGYHMECL
                     DPPLQEVPVDEWFCPECAVPGVDPTHDAAPVSDEEVSLLLADVVPTTSRLRPRVGRTR
                     AIARTRQSERVRATVNRNRISSARRVQHVPRYLMSSLLDETIEAVATGLSTAVYQRPL
                     TPRVPAKRKRKAGRRKKVLGRKKTRSRSSVKSKSGGTRAKKRQHRVRRTKGRKLKNEV
                     TARSRIARTLGLRRPVRGTSMPSVYKPVDPSLGLMRADIGAASLSLFGDPYALDPFDS
                     NGEQSADPPSPLSAKRRVLSRSALQSHQPVARPVAMGLARRQLPAVAPEPSVEEAPVP
                     DLLGSILCGQSLLMMSSADVVIHRDGSLSAKRAAPVSLQRNSVTQSREESRLRDNLQP
                     GALPSESVSGGLIGDRRPNSGLSCGDRTALRCLPAQIVQTPVRSDSSVTPRSGLSGNL
                     SDESRPKWKHSNSPRLNGSNVRVGSASTKTMTHSNFPSKNIAPGHPQKTDPRRPDFSK
                     LPRIPKIRRDGSNSTQDQAPASGQTVELPSACISRLTGREGPGQPGRGRADSEPSSRG
                     PQETGSHTSGSRPPAPSSHGNLAPLGPSRGKGIGSSFESFRINIPGNTAHCSQLSSPG
                     FCNTFRPVDSKVQRKENPSPLFSIKKPKQLKSEIYDPFDPTGSDSSPPSSSPESLGSG
                     LLPSEITRTISINSPKAPAFQTVRCVTSYRVESVFGTEMDPDPQPPGEPVSGMLELLG
                     KGPAEGASDLEQEGLGEIEPTEIQGSSARAQRPSPPDPWDDEDGVSCTPFFGSEERTV
                     TCVTVEEPSVPSPDAPQITTHRIVEFRASSRSRSTSSSRSRKKTKKKKKVAREHQRTR
                     SSTRSGSRDRTSRSVSPFTEEHTKRHRAKTKSRRSSSDRASSQDRAKRRKDRDREHRR
                     GPWGHGRCWRKSRSRSGSPGSSSCERHESRRRKRRHSGSRSRGRDGSPHSSLERDRRH
                     KHRERSRERMDKKESMTRSRERRRWRSRSPSVEHRTRRPHSREKHPHSPEKKGAVREV
                     SPAPAPQGEPRQDGDHSTKPPVSEVSVLPEVVSVLPEVVVADLNPPEVPPVLAESVSC
                     VPEDLDYGDSVEAGHVFEDFSNEAIFIQLDDMSSPPSPESTDSSPERDFLPNPILPPA
                     SLPQNSTLPVTQREVLPIHSEDISKPAPQPLAPSDQCLLRQDTVETTATTLSTPGVLP
                     MGKDSPLLSGRGCEVVRPKDAVAPAPLLRSRTLVKRVTWNLQEAEASTPALDRDPRTP
                     LQRPQRPQEGDWDAEDRALIGFQQAPFSELPPPIHVLQESGLPDADPSQVYSPNMPPP
                     LAQPSSIPPYALVNQPSVQLILQGTLPLASCGAAQNLAPVPTMPATASELAVPTTNNS
                     EERTATPKTAAEKTKKEEYMKKLHMQERAVEEVKLAIKPFYQKREVTKEEYKDILRKA
                     VQKICHSKSGEINPVKVANLVKAYVDKYRHMRKHKKTEAGEEPPTQGAET"
     exon            217..339
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            340..545
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            546..629
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            630..757
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            758..855
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            856..1031
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1032..1161
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1162..1289
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1290..1471
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1472..1591
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1592..1746
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1747..4422
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            4423..4577
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            4578..4832
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            4833..4961
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
     exon            4962..5303
                     /gene="Phrf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcggcggtg gcggcggcgg cggctgaccg gcctacttgc ggtcgtgttc ggacagaggc
       61 aggatcgtct aggagcgtcc gggaggcgcg aggtttccgg aggtgaactc caatgtgcag
      121 ccatggatga tgacaatttg gatgagcttg tggctcacag ccctgggcca gatggacctc
      181 cacaagttgg ctcctcagaa ctagccagtg atgctgaaga aagcagcaat ggccacagtg
      241 aagactctga agatgataca ggcagtgagc aggatgatga cacagatggg gaggaaacag
      301 aggggctgtc tgaagaggaa gacccagaag atagatctgg ttctgaagat tcagaagatg
      361 gaatagaagt gccaacagca gcagtggaga ctcaaaggaa gcttgaagct agcagtacac
      421 ccaattctga tgacgatgca gagagctgcc ccatttgcct caatgcattt agagaccagg
      481 ctgtgggcac cccagagacc tgtgcccatt atttctgcct ggactgcatc attgaatggt
      541 ccaggaatgc taattcctgt ccagttgatc gaacaatatt taaatgtatt tgtattcgag
      601 cccaatttaa tggtaaaatc ttaaagaaga taccagtgga aaacactaga gcttgtgaag
      661 atgaggaggc tgaagaggaa gacccgacct tttgtgaagt gtgtggcagg agtgatcgtg
      721 aggaccggct cctactttgt gacggctgtg atgctgggta ccacatggaa tgtttggacc
      781 ctcctctcca ggaggtgcct gtggatgaat ggttctgccc agagtgtgcg gtccctggtg
      841 ttgatcccac tcatgatgca gctcctgtga gtgatgagga ggtctccttg ctactggctg
      901 atgtagtgcc taccaccagc agacttcggc ctcgagtagg caggacccgg gccatcgcta
      961 ggacacggca gagtgagaga gtgagggcaa ctgtgaaccg gaaccggatc tcttctgcca
     1021 gaagggtcca gcatgtgcca cggtacctca tgtcttctct gctggatgaa actattgagg
     1081 ctgtcgccac tggtctgagc acagctgtat accagcgtcc cttgacacct cgtgttcctg
     1141 caaaacggaa aaggaaggca gggagacgaa agaaagtact gggaaggaag aaaacccggt
     1201 ccaggtcatc tgtgaaaagt aagagtgggg gtacaagagc caagaaacgg cagcaccgtg
     1261 tgaggaggac gaaagggagg aagctgaaga acgaagtcac agctcgttct cgcattgcac
     1321 gaacactagg cctccgcagg cctgtccgtg gcaccagcat gccatcagta tacaagcctg
     1381 tggacccctc tcttgggctg atgagggcag atattggagc agcttctctg tcactgtttg
     1441 gagatcccta tgcactagac ccttttgaca gcaatggaga acagtctgca gatccgcctt
     1501 cccctctgag tgccaagagg agagtgctgt cccgctcagc cctgcagtct caccagcctg
     1561 tggccagacc tgtcgccatg ggactcgcta ggaggcagct ccctgctgtg gccccagagc
     1621 ccagtgtgga ggaggccccc gtccctgacc tgctggggag catcctgtgt ggccagagcc
     1681 tcctgatgat gagcagtgct gatgttgtca tacaccggga tggctctctc agcgccaaga
     1741 gggcagctcc tgtttctctt cagcgaaatt ctgtgactca atccagagaa gagtccaggc
     1801 tcagagacaa cctgcagcct ggggcactac cttcagagag cgtatccggt ggactcatag
     1861 gagacagacg accaaactca gggctgagct gtggggacag aacagctctg cgctgtctcc
     1921 ctgcccaaat agtgcagaca cctgtgaggt cagattcatc agtgacccct cgttcaggtc
     1981 tgtctgggaa cctttcagat gagagcagac ctaaatggaa acacagtaac agcccccgac
     2041 tcaatggctc caatgtacgg gttggttctg cttcaactaa gaccatgact cattctaact
     2101 ttccatctaa aaatatagct cctgggcatc ctcagaaaac agatcccagg agacctgatt
     2161 tctccaagct ccccaggata ccaaagatcc gcagggatgg cagtaatagc acacaggacc
     2221 aggccccagc cagcggtcag actgtcgagc tccccagcgc atgcatcagc cgcctgactg
     2281 gcagggaagg ccctgggcag ccaggacgag gccgggctga cagtgagccc agcagcaggg
     2341 gtccccagga gactggctca cacacaagtg gttctcgacc tcctgcgccc agctcccatg
     2401 gcaacctagc tcctctaggg ccctcaagag gaaagggcat tgggtctagc tttgaaagct
     2461 tcaggatcaa catccctggg aacactgcgc actgcagcca gctgtccagc cctggattct
     2521 gtaacacatt ccggccagta gacagcaagg tacagaggaa ggagaaccct tcacccctct
     2581 tctccatcaa gaagccgaaa caactcaaaa gtgaaatcta tgaccccttt gatcccactg
     2641 gctcagactc tagccctcct agcagcagcc cagagagtct tggttcaggc cttctgccct
     2701 ctgagatcac aagaactatc tccatcaata gcccaaaggc cccagccttc cagactgtgc
     2761 gctgtgttac ctcctacaga gtagaaagcg tctttgggac tgagatggac cctgatcccc
     2821 agccccctgg ggagcctgtc tctggcatgc tggagttact tggcaaggga cctgctgagg
     2881 gagcctctga tttggagcaa gaaggactag gtgaaataga gcctacagaa attcagggct
     2941 cctcagcccg agcacagagg ccatccccac cagacccttg ggatgatgag gatggagtgt
     3001 cctgtacgcc cttctttggc tctgaggagc ggacagtgac atgtgtgact gtcgaggagc
     3061 caagtgttcc aagcccagat gctccacaga taaccaccca cagaattgtg gagttcagag
     3121 cctcatcccg ttcccgctcc acctccagct cccgaagcag gaagaaaaca aagaagaaga
     3181 agaaggttgc cagagagcac cagaggacac gatccagcac tcgctcaggc tccagggaca
     3241 ggacttcacg ctcagtatct ccatttaccg aggaacacac caagagacac agagccaaga
     3301 ctaagagccg gaggtcttcc agtgaccgtg ccagcagcca ggacagagca aagaggagga
     3361 aggacagaga cagggagcat agacggggtc cctggggtca tggcagatgc tggaggaagt
     3421 ccaggtcccg ctcagggagt cctggcagtt cctcctgtga gcgccatgag agtaggagac
     3481 ggaagaggcg gcattcaggg tccagatctc gtggcaggga tggctcacca cacagcagcc
     3541 tggagaggga ccggagacat aaacatcggg agaggagccg agagcggatg gacaagaagg
     3601 agagtatgac tcggtcccgg gagagaagga ggtggcggtc tcggtcaccc agtgtggagc
     3661 ataggacacg aaggccacat tctcgtgaga agcatcccca ttccccagag aagaaggggg
     3721 ctgtgaggga ggtttcccca gcccctgctc cacaggggga gccacggcag gatggagacc
     3781 actctaccaa gcctccagtc tcagaagtaa gtgtcttgcc agaggtagta agtgtcctgc
     3841 cagaggtggt tgtggctgac ctgaaccctc cagaagtccc tcctgtcctc gcagagtcag
     3901 tttcatgtgt gcctgaggac cttgattatg gtgattctgt ggaggcaggc cacgtctttg
     3961 aggatttttc aaatgaagcc atcttcatcc agctcgatga tatgagctca cctccttccc
     4021 ctgagagtac agactcctcc cctgagcgag acttcctacc aaaccccata ctgcccccag
     4081 ccagccttcc acaaaacagt actttacctg tcacccagag ggaggtgtta ccaattcaca
     4141 gtgaagatat ctcaaagcct gcaccccagc cattggcccc ttcagaccag tgcctgctca
     4201 ggcaggacac tgtagagacc actgctacaa ctctgagcac cccaggtgtg ttgcccatgg
     4261 gaaaggacag tcctttgctg agtgggagag gatgtgaagt ggtcaggccc aaggatgctg
     4321 tggccccggc cccactgctg cgatccagaa ccctggtgaa aagagtcacc tggaacctgc
     4381 aggaagcaga ggccagcacc ccagccctgg acagagatcc aaggacacca cttcagaggc
     4441 cccagaggcc ccaggaagga gactgggatg cagaggacag ggccctcata ggatttcagc
     4501 aggcaccatt ctccgagctg ccccctccca tccacgtgct ccaggagtct gggttacctg
     4561 atgcagatcc ctctcaggtt tacagcccca acatgccacc acccctggct cagccctcaa
     4621 gcatcccgcc ctatgcactg gtcaaccagc cctcagtcca gttgattctg caggggaccc
     4681 ttcccctagc aagctgtggt gcagcacaga acctggcccc agtgcccact atgccagcta
     4741 cagcctcaga gctagctgtt ccaaccacca acaactcaga agaaaggacg gctactccca
     4801 aaacagctgc tgagaagacc aaaaaggagg agtacatgaa gaagctgcac atgcaggaac
     4861 gggctgtgga ggaagtgaag ctggccatta aacccttcta ccagaagaga gaggtgacca
     4921 aggaggagta caaggacatc ctgcgcaaag ctgtgcagaa gatctgccac agcaagagtg
     4981 gcgaaatcaa ccctgtaaag gtggccaacc tggtgaaggc ctatgtggac aaatacaggc
     5041 atatgcgcaa gcacaagaag actgaagctg gagaggagcc acccactcaa ggtgctgaga
     5101 cctgaggcta gccactgtgt ggggaggcgt ccccagtagg aaagaaatgg ggctaccagc
     5161 actcctgcct ctgaggttct catgatacct gtctgcacct gtcttgctta caattgaaaa
     5221 ctggactttt tatatgtata ttatagatac actgtttcca ttgtggtcta atttatcaaa
     5281 gatggcttat ctttagaaat ttc
//
