LOCUS       XM_008770167            1421 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus paired-like homeobox 2b (Phox2b),
            mRNA.
ACCESSION   XM_008770167
VERSION     XM_008770167.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 16, 2024 this sequence was replaced by
            NM_001427246.1.
            
            On Jan 21, 2021 this sequence version replaced XM_008770167.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1421
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1421
                     /gene="Phox2b"
                     /note="paired-like homeobox 2b; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     Proteins, and 70% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:364152"
                     /db_xref="RGD:1560582"
     CDS             253..1197
                     /gene="Phox2b"
                     /codon_start=1
                     /product="paired mesoderm homeobox protein 2B"
                     /protein_id="XP_008768389.3"
                     /db_xref="GeneID:364152"
                     /db_xref="RGD:1560582"
                     /translation="MYKMEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQY
                     NPIRTTFGATSGCPSLTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIR
                     TTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAA
                     AAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGP
                     SPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPG
                     PGPITSIPDSLGGPFASVLSSLQRPNGAKAALVKSSMF"
ORIGIN      
        1 gcaatgagac caaccgcttt gctattgtcc aagtggaaag agccaagttt attatgagga
       61 ctatatactc tagagacctc agacaaggca tctcacagga ggctttttca taaaactagg
      121 ctctgctggt agtaaggagg ccagtttgga ggcaggcgtt gagctgtgca catcttccca
      181 ctccagctac cgtctccaca tccatctttt atttcatttt tccacttggc tgagccatcc
      241 agaacctttt caatgtataa aatggaatat tcttacctca attcctctgc ctacgagtcc
      301 tgtatggccg ggatggacac ctcgagcctg gcttcagctt atgcagactt cagttcctgc
      361 agccaggcca gtggcttcca gtataacccg ataaggacca cttttggggc cacgtccggc
      421 tgcccgtccc tcacgccggg atcctgcagc ctgggcaccc tcagggacca ccagagcagt
      481 ccgtacgccg cagttccata caaactcttc accgaccacg gtggcctcaa cgagaaacgc
      541 aagcagcggc gcatccgcac caccttcaca agcgcgcagc tcaaagagtt ggagagggtc
      601 ttcgctgaga cacactaccc cgacatctac acccgggagg agctagcgct gaagatcgac
      661 ctcaccgagg cgagagtcca ggtgtggttc cagaaccgtc gggccaagtt tcgaaagcag
      721 gagcgcgccg ccgccgcagc cgccgccgca gccaaaaacg gctcctccgg gaagaagtcg
      781 gactcctccc gggatgacga gagcaaagaa gccaagagca ccgatcccga tagcactggg
      841 ggcccgggac ccaaccccaa cccgaccccc agctgcgggg caaatggcgg cggcggcgga
      901 gggcccagcc cagccggagc tccgggggcg gcgggcccgg ggggcccggg aggcgaaccc
      961 ggcaagggcg gggcggctgc ggcggctgct gcagcggcgg cggcggcagc ggcggctgcg
     1021 gccgcggcgg cgggaggcct ggctgcggcc gggggccccg gacaaggctg ggctcccggc
     1081 ccgggcccta tcacctccat cccggattcg cttggaggtc ccttcgccag cgtcttatct
     1141 tcgctccaaa gacccaacgg tgccaaagcc gccttagtga agagcagtat gttctgatct
     1201 gcgatccgag gcggcggcgg gcgagcccgg ggtccgggct ggcgagtggg cgagtgggta
     1261 gacccaaggc tagtatcgct gctgtcagtg gctttttcca tcgaaggcct aaaatgatcg
     1321 cgattcgaaa aaacgagaaa atgacgtcgc tcccatttca accccacttc tatcccctat
     1381 ctcccctccc aacaaaacaa aaacaaaaac aaaacaaaaa t
//
