LOCUS       NM_001395091            2512 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus pleckstrin homology-like domain, family B, member
            3 (Phldb3), mRNA.
ACCESSION   NM_001395091 XM_039111369
VERSION     NM_001395091.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2512)
  AUTHORS   Armour,S.M., Bennett,E.J., Braun,C.R., Zhang,X.Y., McMahon,S.B.,
            Gygi,S.P., Harper,J.W. and Sinclair,D.A.
  TITLE     A high-confidence interaction map identifies SIRT1 as a mediator of
            acetylation of USP22 and the SAGA coactivator complex
  JOURNAL   Mol Cell Biol 33 (8), 1487-1502 (2013)
   PUBMED   23382074
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jun 3, 2021 this sequence version replaced XM_039111369.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.1051.1,
                                           SRR26643294.1400.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760476, SAMEA5760494
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                JAXUCZ010000001.1  89328991-89329056
            67-515              JAXUCZ010000001.1  89329274-89329722
            516-695             JAXUCZ010000001.1  89330704-89330883
            696-833             JAXUCZ010000001.1  89331079-89331216
            834-962             JAXUCZ010000001.1  89334866-89334994
            963-1121            JAXUCZ010000001.1  89335896-89336054
            1122-1232           JAXUCZ010000001.1  89337457-89337567
            1233-1316           JAXUCZ010000001.1  89337689-89337772
            1317-1430           JAXUCZ010000001.1  89338453-89338566
            1431-1530           JAXUCZ010000001.1  89342336-89342435
            1531-1621           JAXUCZ010000001.1  89342579-89342669
            1622-1709           JAXUCZ010000001.1  89342752-89342839
            1710-1766           JAXUCZ010000001.1  89343308-89343364
            1767-1974           JAXUCZ010000001.1  89344851-89345058
            1975-2060           JAXUCZ010000001.1  89345652-89345737
            2061-2512           JAXUCZ010000001.1  89346995-89347446
FEATURES             Location/Qualifiers
     source          1..2512
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2512
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /note="pleckstrin homology-like domain, family B, member
                     3"
                     /db_xref="GeneID:308431"
                     /db_xref="RGD:1561121"
     exon            1..66
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            67..515
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     CDS             285..2195
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /codon_start=1
                     /product="pleckstrin homology-like domain family B member
                     3"
                     /protein_id="NP_001382020.1"
                     /db_xref="GeneID:308431"
                     /db_xref="RGD:1561121"
                     /translation="MGTPSTLEEGSLPPQVPECAVEVQPQGVVQPQGHPENPQEHKEP
                     EVPAELPSCQEAGRQEEEEEVEEGSSTESCREEPEATLAAQIPATPSPCLPGEELRGA
                     ARRLRGQQLEALTRVALMEQRVKELQRQKKELRIEMEVEVALLRGELAGERVAARREE
                     EQLRELLGQRVESQQSSQEQREQEQRQLSQERDHVENLRQRLREAQGHLDSQPEDQRE
                     RLSQGVQEIREQLDAAQRTYEDLEFQQLERESRVEEERESPDVPAPDSKVRELQASVA
                     QHKRRILVLEEQLRSLGEQMAAESWGLSRKKEEAVQALTQERSRLFELNCLQGTCGGD
                     FSEPDQALTKLLFTQKTDRQLLVLQDPIAHAAASSTSSCLFSVHSSLQGSIGLQRTGS
                     LPRRRGDRASQRGSSRPLSVHCTGPLEASALTQAVGTPGRHPLYQLLNCGPGNRNPVL
                     HPDIAHMERLLKQAVAERERLLKAREGMKRSQESSTDPAVPAIMAPPHPPGPQDLDLA
                     QHLERWGHNPESCPHLRVSGGYCRGPLVKMGGRIKTWRKRWFCFDRQARRLAYYADKE
                     ESKLKGVIYFQAIEEVYCDHLRCASKSPNPLLTFCVKTYERLFYMVAPNPEAMRIWMV
                     VIGTAADENHAP"
     exon            516..695
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            696..833
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            834..962
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            963..1121
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            1122..1232
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            1233..1316
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            1317..1430
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            1431..1530
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            1531..1621
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            1622..1709
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            1710..1766
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            1767..1974
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            1975..2060
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
     exon            2061..2512
                     /gene="Phldb3"
                     /gene_synonym="RGD1561121"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtagacattg cgagtcccga gttctggatc ctggggtgag gagccttgga cgctgctgcc
       61 ttacaggtgt gtgtgtgtgt gtgtcacctt cggagccgac accctcgccc caatcacgag
      121 cgggtcccta ggaaatccac gccctcggaa tgttcggagc cagtctctga acctttgggt
      181 tccgccccct gggcacgctc gcggcgctct agggcacgcc cacaaacatc ggaccacgcc
      241 ccgaagccct ggccacgccc accccacagg aatccgaagc ggccatgggg acacccagca
      301 ccctagagga gggctccttg ccgcctcagg ttccggaatg cgcggtcgag gtccagcctc
      361 aaggggtcgt gcagcctcag gggcaccccg agaatcccca agagcacaag gagcccgagg
      421 tcccagcgga gcttccaagc tgccaagaag ctgggcggca ggaggaagag gaagaagtgg
      481 aagaaggtag cagcaccgag agctgccgcg aagagcccga ggctacgctg gccgcacaga
      541 ttccagccac accttcccca tgccttcctg gggaagagct gcggggggcg gcgcggcggc
      601 tgcgaggaca gcagctggag gcactaacac gcgtggctct gatggagcag cgggtgaagg
      661 agttacagcg tcagaagaag gaattgagga tcgagatgga ggtggaagtg gccctgctcc
      721 ggggtgagct ggcgggagaa cgagtggccg ctcggcggga ggaagagcag ctgcgggagt
      781 tgctgggtca gcgggtagag tcccagcaga gcagccaaga acagcgggaa caggagcaga
      841 ggcagctgag ccaggagcgg gatcatgtgg aaaatcttcg ccagagactt agggaggccc
      901 aaggacatct tgattcacag ccagaggacc agagagagag gctctcacaa ggggtacaag
      961 agatcagaga gcagctggat gcagcccagc gtacctatga ggatctggag ttccagcagc
     1021 tggagcgtga gagccgcgtg gaggaagaac gggaaagccc tgatgtccca gctccagact
     1081 ccaaggtccg ggaacttcag gccagtgtgg ctcagcacaa gcgccgcatc ctggtcttgg
     1141 aggaacagct caggtctctg ggggagcaga tggctgcaga gagctgggga ctgagcagga
     1201 agaaggagga ggctgttcag gctcttactc aggaaaggag ccgcctgttt gagctcaatt
     1261 gccttcaggg aacatgtggt ggggacttct ctgagcctga ccaagcactc accaagctgc
     1321 tgttcacaca gaagacagac cgccagctgc tggtgctgca ggaccccatt gcgcatgcgg
     1381 ccgccagctc cacctcttcg tgtctcttct cagtgcacag ctccctgcag gggtctattg
     1441 gtctccagag gacgggaagc ctgccccgga ggaggggaga cagagccagc cagaggggat
     1501 cctcccgacc tttgtctgtc cactgtacag gacccctgga ggcctctgct cttacacaag
     1561 ctgtggggac ccctgggaga caccctctct atcagctgct caactgtggc cctgggaata
     1621 gaaaccctgt gcttcaccca gacatcgcac atatggagcg actcctgaag caggctgtgg
     1681 ctgagaggga acggctgctc aaggccaggg aagggatgaa aaggagccaa gaaagttcca
     1741 cagaccctgc agttcccgcc atcatggccc caccacaccc tcctggtccc caggacctgg
     1801 acctcgcaca gcacctggaa cgctggggcc acaatccgga aagctgcccc cacttgaggg
     1861 tgtccggggg ctactgtcgt gggcccctgg tgaagatggg cggccgtatc aaaacgtgga
     1921 ggaaacgctg gttttgcttt gaccggcagg cgcgccgtct ggcttactac gccgacaagg
     1981 aagagagcaa gctcaaaggt gtcatctatt tccaggccat tgaagaagtg tactgtgacc
     2041 acttacgctg tgcctccaag agccccaacc ccctcctgac cttctgtgtc aagacctacg
     2101 aacgcctttt ctatatggtg gcccccaacc cagaagccat gcgaatttgg atggtcgtca
     2161 tcgggacagc tgcggacgaa aaccacgccc cctgaccccc tagcggtccc gccctctgag
     2221 aaaggaggtt cccccgagct gcgcccctag acgcaccttc cggcctttga ggccccgccc
     2281 acttcaggaa actctcggcc ccgccccttt ggccttctcc agggcgctgc agccgctcag
     2341 ccgctccagc tcagcgggcc tgagccacgg aggtctgggc tgcaggtggc ttccaggcgg
     2401 catcgccagg ccctgggggc cccgcttggg ggcaggagga agattacagg ggcggaagga
     2461 actatttatt ggtgctcctc cgataccgaa ttaaacgtgg tgaaaaaaca gg
//
