LOCUS       XM_039088877            5945 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pleckstrin homology-like domain,
            family B, member 2 (Phldb2), transcript variant X1, mRNA.
ACCESSION   XM_039088877
VERSION     XM_039088877.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088877.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5945
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5945
                     /gene="Phldb2"
                     /note="pleckstrin homology-like domain, family B, member
                     2; Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 22 ESTs, 4 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:685611"
                     /db_xref="RGD:1591402"
     CDS             199..4275
                     /gene="Phldb2"
                     /codon_start=1
                     /product="pleckstrin homology-like domain family B member
                     2 isoform X1"
                     /protein_id="XP_038944805.1"
                     /db_xref="GeneID:685611"
                     /db_xref="RGD:1591402"
                     /translation="MDPRVSSENHQEVPMEEEDEPREEPKNGEADDPEHFGSSDTMAE
                     ASHTLKQLELQNGSLEEEFVVHSLENEPQNMMESLSPRKYSSSLKFKANGDYSGSYLT
                     LSQPVSTKRSPSPLGSSVRSSPSLAKIQGGKQFCDGIDKNISMKPPISFLSSTASLSG
                     YPIGKADLDHYTGRDSERSFRLSEKPPYSRYSSRNKSHDSVYFLGGAEGRKASGSLLT
                     MWNGNSLSGTGSAPISRSGAASMPSSPKQARKMNLQDNLPLQPRLSRHKEQASENVSV
                     RTRKYSGSSLSNMGAYSRSLPRLYKATDNQMSPLSLPPRNSLGNSRRGQLGEKDLPHS
                     LVDNDNYLNFSSLSSGASPYKTCLSDGNPYVSSALSVPASPRVARKMLLASTSSDDFD
                     RASYSGTSPSHSFLSGEPDRVLVARRNFSCGSMELDDSDLESLRQSSETPQPILRERK
                     SSISSISGRDDLMDYHRRQREERLREQEMERLERQRLETILSLCAEYTKPEGRRLSAG
                     TTVADVQKINKELEKLQLSDEESVFEEALVCPDARYRCHRKGSLQDVDIAGFGSLGHS
                     ASFLAPRGSKNDELLGDLTRMPPPSSAAFLKATNESSYLSILPKTPEDMGEEQRTQEL
                     AAMEDARMVILNNLEELEQKIKDINDQMDESSRELDMECALLDGEQKSETAELMKEKE
                     ILDHLNRKITELEKNIVGEKTKEKVKLDAEREKLERLQELYSEQKTQLDNCPEAMREQ
                     LQQQLKRDADLLDVESKHFEDLEFQQLEHESRLDEEKENLTQQLLREVAEYQRNIVAR
                     KEKISALKKQASHIVQQAQREQDHFVKEKNNLIMMLQREKENLCNLEKKYSSLTGGKG
                     FPINPNTLKEGYISVNEINESCGNSMNLSPSTQFPADADAAVTEPASAVPVSQPQSSE
                     HQSAVCSGFMPPSTLSPSVTESSSAAWPEVMATPVDSFPLNDTPPPLPAKKHRRQQPQ
                     EQQHFRSLEERKKQHKEGLYLSDTLPRKKTTPSLSPHFSSATMGRSTTPKAHLPLGQS
                     NSCGSVLPHSLATMTKDAESRRILRGRMNSSAGYNHQQMSEGQRQKPEFYSRTASESN
                     VYLNSFHYSDRSYKDQAYDTLSLDSSDSMETSISACSPDNISSASTSNIARIEEMERL
                     LKQAHAEKTRLLESREREMEAKKRALEEEKRRREILEKRLQEETSQRQKLIEKEVKIR
                     EKQRAQARPLTRYLPVRKEDFDLRSHVETAGHNIDTCFHVSITEKTCRGYLIKMGGKI
                     KTWKKRWFVFDRNKRTFSYYADKHEAKLKGVIYFQAIEEVYYDHLKNANKSPNPLLTF
                     SVKTHDRIYYMVAPSPEAMRIWMDVIVTGAEGYTHFLL"
ORIGIN      
        1 ttccctcctt cacatctgtc cacacgcctg accataagaa agttgctgcc tgtgactagc
       61 agagaaggag gcaaagggtt acctcccttt ctctcttgag gaagagtgga agcttctgcc
      121 tcagccctag actctccagc tgagctggga aggaagccag aaaagacacc ggataggaaa
      181 gtaacaaagg aggttgatat ggatcccagg gtctcctctg agaatcatca ggaggtccct
      241 atggaggagg aagatgaacc aagagaggag cccaagaatg gtgaagctga tgacccagaa
      301 cactttgggt ccagcgatac catggcagaa gctagccata cactgaagca gctggaatta
      361 caaaatggta gcttagagga agaatttgtg gtacattccc tggagaacga gccccaaaac
      421 atgatggaga gcctaagccc gaggaagtat tcatcaagtc tgaagtttaa agccaacggg
      481 gattattctg gttcatattt aaccctttcc caacctgtgt ctaccaagag aagcccttct
      541 ccgttgggct ccagcgtcag gagtagtccc tccttggcca aaatccaggg aggcaaacag
      601 ttctgtgatg gaattgataa aaatatttcc atgaagcctc ctatatcttt cctcagctct
      661 accgcctctc ttagcggcta tccgattggg aaagcagatt tggatcatta taccggtcga
      721 gacagtgaga ggtccttcag actctcagag aaacctccct actccagata cagctctagg
      781 aataaatcac acgacagcgt ctactttcta gggggggcag aaggacgaaa agcctctggc
      841 tcgctcctga ccatgtggaa cggtaattcc ttgagtggca ctggctccgc acccatcagc
      901 aggtctgggg cagcgagcat gccttcaagc ccaaagcaag ccaggaaaat gaaccttcag
      961 gacaacttgc cgcttcagcc caggttaagt aggcacaaag agcaagcctc tgaaaacgtc
     1021 agtgtgagaa cgaggaaata ctcaggcagc agtctgagta atatgggtgc ctacagccga
     1081 tcgctcccca ggttgtataa agccacagac aaccagatgt cgcctctcag cctgcctcca
     1141 agaaattccc tgggcaattc cagacgaggt cagttaggag aaaaggatct acctcacagc
     1201 ctagtggata atgacaatta ccttaacttt tcttctctga gctccggggc ttcaccctat
     1261 aaaacctgtc tgtcagatgg aaatccttac gtaagctccg ctctcagtgt ccctgccagc
     1321 cctcgagtgg ctcggaagat gctcctggcc tccacctcct ctgatgactt tgatagggct
     1381 tcatactcag ggaccagccc aagtcactcc ttcctttctg gagagcctga ccgagtgctt
     1441 gtggctagga ggaacttctc ttgtggatca atggagcttg atgactctga tctggaaagc
     1501 ctgagacagt cttcagaaac tccgcaaccc atcctccgag aacggaaaag tagcatcagc
     1561 tccatctcag gacgcgatga cctgatggat tatcaccgac gacagaggga ggagagactc
     1621 cgggagcagg agatggagcg actggagcgg cagcggctgg agaccatcct cagtctctgt
     1681 gctgagtaca cgaagccgga aggtcgccgc ctgtccgctg gcaccacagt ggctgatgtg
     1741 cagaaaatca acaaggagct tgagaagctt cagctgtcgg atgaagagtc tgtgtttgag
     1801 gaagctctgg tgtgcccgga cgccaggtac aggtgccacc ggaagggctc tctccaggat
     1861 gttgacattg ctggcttcgg gagcctgggt catagtgcca gcttcctggc ccccaggggc
     1921 agcaagaacg atgaactgct tggtgacctc accaggatgc ctccaccatc ctcagcagca
     1981 tttctgaaag caaccaatga gtcctcctac ctcagtatcc taccgaagac cccagaggat
     2041 atgggtgagg aacagaggac tcaggagttg gctgcaatgg aagacgcccg gatggtgatt
     2101 ctgaacaacc ttgaggaact tgagcagaaa atcaaagata taaatgacca aatggatgaa
     2161 tcgtccagag agttggatat ggaatgcgct cttttggatg gagaacagaa atccgagacg
     2221 gctgagctca tgaaggaaaa ggagattcta gatcatctaa accggaaaat cacagaacta
     2281 gaaaagaaca tcgtaggcga aaagaccaag gagaaggtaa agcttgatgc tgaaagggaa
     2341 aagctagaga ggcttcagga gctgtactcc gagcagaaga cccagctgga caattgtcct
     2401 gaggccatga gggagcagtt acagcaacaa ctcaagaggg atgccgactt gttggatgtt
     2461 gagagcaaac actttgaaga cttggaattc caacagcttg agcatgagag ccgtctggat
     2521 gaggaaaagg agaacttgac tcaacaactc ctgcgggagg tggcagaata tcagcggaac
     2581 atcgtggcta ggaaggaaaa aatatctgca ttgaaaaagc aagccagtca catcgttcag
     2641 caggctcaga gggagcaaga tcacttcgtg aaagagaaga acaatctgat aatgatgctt
     2701 caaagagaaa aagagaacct ttgtaatttg gaaaagaagt actccagcct cactggggga
     2761 aaagggtttc ctattaaccc caatactctg aaagagggct atatcagtgt aaatgagatt
     2821 aatgagtcat gtggcaattc catgaatcta tccccttcca ctcagttccc tgctgatgct
     2881 gatgctgctg tcactgagcc tgcctcagct gtgccggtga gccagcccca gagttcagag
     2941 caccaatcag ctgtctgttc tggatttatg cctccttcca ccctttctcc ttctgtcact
     3001 gaatcttcat cagccgcttg gcctgaagtc atggctacac ctgttgattc tttcccttta
     3061 aatgacacac ctcctcctct accagctaag aaacacagaa ggcagcagcc tcaggaacaa
     3121 cagcacttta gaagcctgga agaaaggaaa aagcagcaca aagaaggcct ctacctgagt
     3181 gacactctgc ctcgaaagaa aaccacccct tccctgtccc cacacttcag cagtgccaca
     3241 atggggagga gcaccacccc gaaggcccac ctccctctgg ggcagagcaa tagctgtggc
     3301 agtgtgctcc ctcattcgct ggcaaccatg acaaaggatg ctgagtctcg gaggatactg
     3361 agaggaagaa tgaattcttc agcaggttat aatcaccaac agatgagcga aggacaaaga
     3421 cagaaacctg aattctacag ccgcacagca tcagagtcga acgtctactt gaatagtttc
     3481 cattactcag accgcagcta caaggaccag gcctatgaca cattgagcct agacagctct
     3541 gatagcatgg agaccagcat ctctgcctgt tcaccagaca atatatctag tgccagcaca
     3601 tctaacattg ccaggataga agaaatggaa agactcttga aacaggcaca cgcggagaag
     3661 acgcggctgc ttgagtccag ggaacgggaa atggaagcca agaagcgagc tctggaagaa
     3721 gaaaaacgac gccgggaaat cctggaaaag cgactacaag aagaaaccag ccagaggcag
     3781 aagttaatag aaaaagaagt caaaataaga gagaaacaaa gggcacaggc tcgtcccctg
     3841 actcgctatc tgcctgtccg gaaagaagac ttcgacttgc ggagtcatgt ggagactgcg
     3901 ggccacaata tcgacacctg ttttcatgtg tcaatcacag agaagacctg ccgaggatac
     3961 ctcatcaaaa tgggtggaaa aattaaaacg tggaagaaac gctggtttgt ttttgaccgg
     4021 aataagcgaa cattttctta ttatgcagac aagcatgagg ctaaattaaa aggagtgata
     4081 tactttcaag ccattgaaga agtgtattat gatcacctca agaatgccaa taagagtcct
     4141 aatccattac tcacctttag tgtcaagacg cacgacagaa tctattacat ggtggcccct
     4201 tcaccggagg ccatgcggat ctggatggat gttatagtga cgggagcaga aggatatact
     4261 cacttcctgt tgtagagaac tttggccgtg gtccacttca gggaagactg caatagtctc
     4321 ttacaagaat gaagccatat ccagtatcag atggaaatgc ctaacagacc catcccatta
     4381 gctgtgtgca ctcagaactc tttttaaact ggggagcctt tcatacaagg aagcagggcc
     4441 tggagctcct acggcaaaac acaaaccaaa acactattct gataaaagca tcacttagat
     4501 gcacgctcgt tttcatcagc tgatgttggt taagtcaacc gaacagttta cacaatgtct
     4561 gtaaatatgt acttagaaat agaagattat tttagcaccc agctctctgt ccttggtgat
     4621 cacctgcctt ctttgtagga agtaggattt tataaaaaac aggcagataa tgacttagaa
     4681 ggcaacaggt gttagacact ttgccttagt ttttaaatac tgtacccaaa ccaaagactt
     4741 agcttgacaa ctgttgtttc atgtcagtgt tgctctctaa ataatcttta aaatgggatt
     4801 ttaatgctaa cgctgtagtg tccacccccg cccccaagct actgtgccta tatagtaaac
     4861 cactttctta aaagaataaa aacaaacaaa caaacaaaaa aaaactcctg ttttaagaaa
     4921 aggccatctc agacaacaga ctcctacaac atcaggcaat ttgaattaag gagaacgttt
     4981 agtgggaggg agggatcttg ttctgttgat ttgtccattc ctggtgctgg gaatgaaagc
     5041 aaccagtagc cagttccctc caatctgttg gattctgctt gcttatgaag caaacatgtt
     5101 atctgcacct tcacatggtg taactatgca tccatccctg tttcactgaa aacctgagca
     5161 ctcaacacac aaaacacaaa agacacagaa aagacaacca aaattcaaat taacattctc
     5221 tgtgctatgt cttttcccat gtgtctctac aaatagcctt tgtttccaga gctaattttt
     5281 gttgaatgaa atgacttcgg gcaagtctct tttataatca tttttcaagt gccatttgtg
     5341 tgtgagagta tgtgagtgtg tgtgtgagtg tgtcagagtg tgtgtgtgtg tgtatgttct
     5401 gtgtttgtaa gtatgaacaa attattttct aaaacatgcc aaatggatag aaatagaaaa
     5461 caatgtttag aaacatgtcc atgaaacttt caggcctgac tgggtacaat taaaaaaact
     5521 tacagtgtac ttttatacct gtatacatgt taccaataat aagattttgt aactggatga
     5581 tgtgaggttt tacttgaata atgaggggga aagatcagta ctgtagcagg tatttttttt
     5641 tttcatctgt gatttctgca gacgttctcc ttcaatgcta gtgatcttaa acattaaaag
     5701 gcaattgtta aggtttggtt gcttaatgta aagatacaat ttgtctgtat tgtaccttct
     5761 tcataggatt gtaagggtgt tctaatcatt ttgcatgtca taaatctttt agatgtgtat
     5821 gtgtgttaaa tgtatggagt ttggattaaa ctgttgacct gattcacatt tgaaaatctc
     5881 tctctctctc tctctctctc tctctctctc tctctctctc tctctctctc tgtaattaac
     5941 tatct
//
