LOCUS       XM_006244677            7582 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PHD finger protein 3 (Phf3),
            transcript variant X5, mRNA.
ACCESSION   XM_006244677
VERSION     XM_006244677.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244677.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244677.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7582
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7582
                     /gene="Phf3"
                     /note="PHD finger protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 40
                     ESTs, 4 long SRA reads, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 19 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:363210"
                     /db_xref="RGD:1304925"
     CDS             328..6126
                     /gene="Phf3"
                     /codon_start=1
                     /product="PHD finger protein 3 isoform X4"
                     /protein_id="XP_006244739.1"
                     /db_xref="GeneID:363210"
                     /db_xref="RGD:1304925"
                     /translation="MDEGVVKESGNDTIDEEELILPNRSLRDRVEDNSVRSPRKSPRL
                     MAQEQVRSLRQSTIAKRSNAAPLSTKKPSGKTFSTSKAGVKPPERCQGKEEVYASLKS
                     EHPKESRRNSRHAEHMDMVLEVSASSADSPVPSCVGMKEAAELHPRHACNNQGEVSAP
                     SPDLSCSPPSEASASAGVGGKRTEALMECKTSSSPLFKVSVKEDEQSDLVSGELDDTI
                     EGVNAVGRLEQESEEIKFSCEGDRMSTEPESSDVSSDSACTDKNKTEKNEGAQCHLEL
                     KNTVDIVDKPENSPPSNQMEMLDYGEDVGTNDAQLQSTEFTKSHLEEVDTCAFEPETS
                     TFENTICDVPDQNSKQLNITQSIKMETSNLQDDRSGLGPKNMKSKHTKSVTHSKPSMT
                     IETPRKTVAVKPEVGHSKTKSNAKTMKRNADEPEPQPDCQRPVKVRKKQVDKDLKSQS
                     CNSGVKSVKGQVHSVLKKIPQDQTAMQISKPLTHSVNDKLPGHSGHSLEKPPHPGHTG
                     HLVHSNQKQSHKPQPQAGAVRVTSHVRDEHEHPGTEHPKEEDKLKPKKLDRNLQPRQR
                     RSSRSFSLDEPPLFIPDNIATVKKEGSDQTTSVENKYMWTPSKQCGFCKKPHGNRFMV
                     GCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCIRCCAEEDKKTDILDTETLETQASL
                     EAHSEDKRVECGKLTSSSSKHSVTEDKHRHMDDPGRHKVKIVKRDSGEGKTSSDSRDN
                     EIKKWQLAPLRKLGQPLLPRRSSEEKSEKIAKDSAALTCAGEKAARSGTHEKQETKKK
                     KVEKGGPNVHPPAAAAIKPSADQIRQSVRHSLKDILMKRLTDSNLKIPEEKSAKVATK
                     IEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELA
                     SKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEAAMEIQ
                     EPSSANKSSEKPEASEKQKEELDSTSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSP
                     KTVKVVVGGARKHSDNEAESIADALSSTTNILASEFFEEEKQESPKSTFSPTPRPEMP
                     GTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRIS
                     PQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQV
                     KDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRQHSASAGPSHTAE
                     TPESAPISLPPDKKGKMESSTEEAAEEESDFFNSFTTVLHKQRNKPPQPPQEDLPTAA
                     EPLMEVTKQEPPKPLRFLPGVLIGWENQPSTLELANKPLPVDDILQSLLGTTGQVYEQ
                     AQPVVEQSTLKEIPFINDQTTPKVEKIDKVEVTEGEAKEIKVKAENVSESTGKNSGVE
                     ETSLVGSSSISPGPLASLSLRGKPPDVSTEAFLTNLSIPSKQEETVENKERTLKRPLL
                     QDQENSSQDNRTCSNSPCRPSTGKGSVDGNVSCSENLVANTRSPQFINLKRDPRQAAG
                     RSQQTVSDSKDGESCRNGERHSVCAPSYNREPVEPVSGEGKPSSLEKSSCVEQSDDSE
                     AVPNSSSVENSNSSQAEQANPLQEDILTQNIETIHPFRRGSATSSSHFEGGNTCQSEF
                     PSKSINFTPRSTSPRASTNFSPMRPQQPNLQHLKSSPPGFPFPGPQNFPPQSVFGFPP
                     HLPPPLLPPPGFGFPQNPPMAPWPPVHVPGQPQRMMGPLSQASRYMGPQNFYQVKDIR
                     RPERRHSDPWGRQDQQQPDRPFNRGKGDRQRFYSDSHHLKRDRHDKEWEQESERHRHR
                     DRSQEKDRDRKSKEEAHKDKERPRLSHSDRAADGKANRESKSADKKPDRPKGEDHEKE
                     KEREKSKHREGEKDRERYHKDRDHTDRAKSKR"
ORIGIN      
        1 tcttagagga ctcgctgaag aacatgctca gcgataagga tcctatgcta ggatctgcaa
       61 gtaaccagtt ctgtttgcct gttttggata gcaatgatcc caatttccag atgccttgta
      121 caacaggata gaccactctc ttgttgagct ctttcaaatg acgttcttct acttggatac
      181 aaggatgagg actagataac ttctaacccc taggatgaag atagtagcta acatttgtct
      241 agtgctctaa agtttacaga gtgagttcat gcatcatccc tctagatcct cacaacagca
      301 ctgtgagttg ttggtcttga cgatattatg gatgaaggag ttgttaaaga aagtggtaat
      361 gataccattg atgaagaaga attgatttta cctaacagga gtttgaggga cagagtagaa
      421 gacaattcag taagatcacc aagaaaatca cctcgtttaa tggcacaaga acaagtaaga
      481 agtttgcgac aaagcactat tgccaagcgt tcaaatgcag cacctctaag cacaaaaaag
      541 ccatctggga agactttctc tacctctaaa gcaggggtga aaccaccaga aagatgtcag
      601 ggtaaagaag aagtttatgc atcactgaaa tctgagcacc ctaaggagag cagaaggaat
      661 agccgacatg ctgaacacat ggacatggtg ctggaagtct cagcatcttc agctgattct
      721 ccagtgccat cttgtgtcgg aatgaaggaa gcagctgagc tccatcccag gcatgcgtgt
      781 aataaccagg gcgaagtgag tgcgccatcc ccggacttaa gttgttcgcc tccctcagag
      841 gctagtgcta gtgctggtgt gggaggaaag agaaccgaag ctctgatgga gtgtaagact
      901 agcagtagcc cattatttaa ggtttcagtt aaagaggatg agcaaagtga ccttgtttcc
      961 ggtgaactgg atgacaccat tgaaggagtg aatgcagtgg gaagacttga gcaagagtca
     1021 gaggagataa agttctcctg cgaaggtgac cggatgagca cggaacctga atcttctgat
     1081 gtatccagtg actctgcttg taccgataaa aataagacag aaaagaatga aggggcgcag
     1141 tgtcatttgg aattgaagaa tactgtggat attgttgata aacctgagaa ctctcctcca
     1201 agcaatcaaa tggaaatgct ggactatggt gaggacgtgg ggactaatga tgctcagtta
     1261 cagagcacag agtttactaa gtcacatttg gaggaggttg acacttgtgc ttttgaacca
     1321 gaaactagta cttttgaaaa tactatttgt gatgttcctg accaaaattc aaagcaatta
     1381 aatattactc aaagtattaa aatggaaaca tcaaatcttc aggatgatag aagtggttta
     1441 gggcccaaaa acatgaaatc caaacacaca aaatctgtaa ctcattctaa accaagcatg
     1501 accatagaga caccaagaaa aactgtggca gtaaagcctg aagtaggtca cagcaaaact
     1561 aaatctaatg ccaagactat gaagcgaaat gctgatgaac cagagcctca gcctgattgt
     1621 cagaggccag tcaaagtgag aaagaaacaa gttgataagg acttgaagag tcagagttgt
     1681 aattctggag ttaaatctgt gaaaggccaa gtccattctg tattgaaaaa aataccccag
     1741 gatcaaactg caatgcaaat ttccaaacct ttaactcatt ctgttaatga taaacttcct
     1801 ggtcattctg gtcactcctt agagaagcct cctcatcctg gacacactgg acacttagtg
     1861 cattccaatc agaagcagag tcataagcct cagccacagg cgggagcggt gagggtcact
     1921 agccatgtga gggatgagca tgagcatcca ggcactgagc accctaagga ggaggacaaa
     1981 ctgaagccaa aaaaactcga taggaatcta cagcctcgcc aaaggagaag cagcagaagt
     2041 ttttctctgg atgagcctcc actgtttatc ccagacaaca tagctactgt aaaaaaagaa
     2101 gggtcagatc agaccacctc tgttgaaaac aaatatatgt ggactcccag caagcaatgt
     2161 gggttttgca aaaaaccaca tggcaacagg tttatggttg gctgtgggag atgtgatgac
     2221 tggttccatg gggactgtgt tggactaagt ctttctcaag cgcagcaaat gggagaggaa
     2281 gacaaagagt atgtttgcat aagatgctgt gctgaagaag ataaaaagac ggacatacta
     2341 gatacagaga ctttggaaac ccaggcttcc ctcgaagccc acagtgaaga taaaagggtg
     2401 gagtgtggaa agctgacatc gtcgtcatcg aagcactcgg tcaccgagga taaacacaga
     2461 cacatggacg accctggcag gcacaaggtc aaaattgtaa aacgggactc tggtgaggga
     2521 aaaacttcct ctgatagtag agataatgaa attaaaaaat ggcagctagc ccctcttcgc
     2581 aagttgggcc aaccactttt acctcgaagg tcatcagaag aaaaaagcga aaaaatagca
     2641 aaagactctg cagctctcac ctgcgcagga gagaaagcag cgagatcagg tactcatgag
     2701 aagcaagaga caaagaagaa gaaagttgaa aagggtggac ctaatgtgca ccctcctgcc
     2761 gctgctgcca tcaagccttc tgcagatcag atcagacaga gtgtccggca ctcccttaag
     2821 gatattctta tgaaaagact tacggactca aacttgaaga tcccagagga aaagtcagca
     2881 aaggttgcca caaaaattga aaaggaactt ttctcttttt ttcgggacac agatgccaag
     2941 tataagaata aatacagaag tttgatgttc aatctaaaag atcctaagaa caatatatta
     3001 tttaagaaag ttctaaaagg agaagtaacc cctgatcatc ttataagaat gagtccagaa
     3061 gaactagcgt ccaaagagtt agccgcgtgg agacggaggg aaaacagaca caccatagag
     3121 atgatcgaga aggaacagag agaagtggaa agaagaccaa tcacgaaaat aactcacaaa
     3181 ggtgagatag aaatcgagag tgacgccccg atgaaagagc aggaagcagc catggagatc
     3241 caggaacctt cttcagccaa taagtcctcg gagaagccag aagcatccga gaaacaaaaa
     3301 gaagagcttg actccacatc caaagacacc accagtcaac atagacagca tctttttgac
     3361 ctgaactgca aaatatgcat aggtcgaatg gcaccacctg tagatgatct ttctcccaaa
     3421 accgtgaagg ttgttgtggg cggcgcccgt aaacactccg acaacgaggc ggaaagtata
     3481 gcggatgcgt tgtcttcaac gacaaatatt ctggcctctg aattctttga ggaggagaaa
     3541 caagaatctc ccaaatcaac attctctccc actccacgtc cagagatgcc tggaactgtg
     3601 gaggttgagt caaccttcct ggctcgattg aacttcatct ggaaaggttt tatcaatatg
     3661 ccatctgtgg cgaagttcgt taccaaagcc tacccagtgt ctggatcccc cgagtacttg
     3721 acagaggacc taccagatag cattcaagta ggtggcagga tatcgcctca gactgtttgg
     3781 gattatgtag aaaaaataaa agcatcaggc accaaggaaa tctgtgtggt tcgtttcaca
     3841 ccagtaactg aagaagatca gatttcttac actttgctgt ttgcgtactt cagtagcaga
     3901 aagcgctatg gtgtagccgc taacaacatg aagcaggtta aagatatgta ccttattcca
     3961 ttgggcgctg cagataaaat tccacaccct ctcgtgcctt ttgatggacc tgggcttgag
     4021 ctgcacagac ctaatctgtt gttgggtctg attattcgtc agaagctgaa gcggcagcac
     4081 agcgctagtg cgggccccag tcacacagcc gagactcccg agagtgcccc aatatccttg
     4141 ccacctgaca aaaaaggtaa aatggagtca tccacagagg aagcagcaga ggaagagagt
     4201 gactttttca attcctttac aactgtgtta cacaagcaga gaaacaagcc ccctcagcct
     4261 cctcaggagg acttgccaac tgcagctgaa cctctcatgg aagtcaccaa gcaggagcca
     4321 cccaaaccct taaggttcct tcctggggtc ctaattggct gggaaaatca accttctact
     4381 ctggagttgg caaataaacc tcttcctgtg gatgacatac tccaaagcct gttgggcacc
     4441 actggccagg tttatgagca ggctcagcca gttgtagagc aaagcactct taaagaaatt
     4501 ccttttataa atgatcaaac taccccaaaa gtagagaaaa tagataaagt ggaagtgact
     4561 gaaggtgaag ccaaggagat aaaagttaaa gcagaaaatg tttcagagtc tacaggtaaa
     4621 aactcaggag tagaagaaac ttcactggta ggctcctctt ccatttctcc agggcctttg
     4681 gcaagtctta gtctgagagg gaaaccacca gatgtctcta cagaagcatt cttaacaaat
     4741 ttatcaattc cttcaaaaca agaggaaact gtggaaaaca aagagagaac attaaaaaga
     4801 ccactgctcc aagatcagga gaacagttcg caagataata ggacttgtag taactctcct
     4861 tgccggccta gcaccggaaa gggaagcgta gatggaaatg tgagctgcag tgagaatctt
     4921 gttgctaaca caagatcccc acagtttatc aacctgaaaa gggatcctcg gcaagcagca
     4981 ggacggagcc agcagacagt ttcagacagc aaggatggag agagctgcag aaacggagaa
     5041 aggcattctg tgtgtgctcc atcatacaac agagagcccg tagaacccgt cagtggagag
     5101 ggaaagccct cttctctgga gaagagctcg tgtgtagagc agagtgatga ttcagaggct
     5161 gtgccaaact catcctcggt agaaaactca aattcttcac aagcagaaca agccaatcct
     5221 ttacaagagg atattttaac acaaaatatt gaaaccatcc acccatttag aagaggatca
     5281 gctacatcat catctcattt tgaaggtgga aacacatgcc agtcagaatt tccttctaaa
     5341 agcatcaact ttactcccag gagtaccagc ccccgagcga gtacaaactt ttcaccaatg
     5401 aggccacagc agcccaacct ccagcacctc aagtctagtc ctcctggatt cccatttcca
     5461 ggaccccaga atttccctcc ccaaagtgtg tttggattcc caccacattt gccacctccg
     5521 ttacttccgc ctccaggctt tggctttcct cagaatcccc ccatggctcc ttggccacct
     5581 gttcacgtcc cgggccaacc acagcgcatg atggggcccc tttcacaagc atcaaggtac
     5641 atgggaccac aaaattttta tcaggtaaaa gatattcgga gaccagaaag gcgacatagt
     5701 gacccatggg gtaggcaaga ccaacagcaa ccagataggc catttaatag gggtaaaggg
     5761 gaccgtcaga gattttacag cgattcgcac cacttgaaaa gagaccgtca tgacaaggaa
     5821 tgggagcaag aatctgaaag gcacaggcac agagacagaa gccaagaaaa ggacagagac
     5881 aggaaaagca aagaggaagc acataaagat aaggagagac cacggttatc acacagcgat
     5941 cgagcagcag atggcaaagc caacagagag agtaagagtg cagacaagaa accggacagg
     6001 cctaaaggtg aagaccatga aaaggagaaa gagagagaga agagcaagca cagagagggg
     6061 gagaaggaca gagagcggta ccacaaagac agggaccaca ctgacagggc gaagagcaaa
     6121 aggtgaaacg caaggctgct tcagcatcat actcaaaact gtccgtgtgt ctttataaga
     6181 ttgccgcctg gtaggcctgt gccgtcttag ccctcgctgt tggaggtggg cagagcagta
     6241 aactgtgctg gtgcggaatc ctgtgcacca gtgccccctt cacaccactg tcctacctac
     6301 aggaatttaa tatttttaaa gttttacaat actgtatgta tattcaaaga tttgtttaat
     6361 taatatgcaa taaaggctta gaaattttag ttttattcct taattggtaa atatggttaa
     6421 ctatgaaata tatttcctgc ctctagtgaa tgtcctttat ataatgacta atttggaagt
     6481 aatttgtgct ctgtacattt gttttcaatt gcactgtttt taaagaaaat gtagaggagc
     6541 ggcaagaaag ccgagacttc ccagtcagac catcctgact taggggcagc ttttgactgt
     6601 gaatcaagag cccagggagt ccatttgttg ctttaatctg tgctcactga aggcggttct
     6661 gaccctgtac tgcagtttgt ggtaggccat atccctttcc tttctgctct tcagaaactt
     6721 gaatacttaa gcttgtacat gatcttgtgt tttgctatcc tttttactgt aaaatgtaaa
     6781 tattttaagg gatattttga ttctaaatat gataaaagaa tttctcacct actttgtgtg
     6841 tgtgatttga aattcaatag taaaagcaat tcttcgaagc ttcttttcct tgagacatta
     6901 ttcttttact cagccaagaa tatgtagaca gactgtcaga cattcctaag cgaggaatgg
     6961 ttcttacagc ttacatgact cacatctacc gagcctagtg tttagaactg ccagtaggga
     7021 gctttgcagt cagccattta gttgccatta tgtttctgaa aacttatata tgattaaact
     7081 ttgttataca gactcagtag tcattgtgaa actgcagact tttaagtgaa atgtattttg
     7141 atttttgatt atattttttt ggaaaatgat ttgtttgtag ggcaactgta aaattgagta
     7201 tgccagtttg acttgaaata gaaaacacac aagacttgtt ctttcagatc taaacttact
     7261 cacaccccga aatccatcct gtgctgatgt ttaaaaccta aagcagtagc tgccggctga
     7321 tgctaacact ccgcagccag acaggagcca ccagtgtgct tatctacctg ttcccatgaa
     7381 gaatcccggt aactccacaa aattaagaaa accgtttcta aaggaggatt accatgtttt
     7441 tgaaaccaga ttaaccttcc caaagaaaat agtagtcaaa cattttgtct gaattgcaag
     7501 gattacaata ttttttccca tctttgcctc tgaaatttaa atgaagtttt tccatttaaa
     7561 taaagtattt ttaatgtctt gt
//
