LOCUS       XM_006244676            7615 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PHD finger protein 3 (Phf3),
            transcript variant X4, mRNA.
ACCESSION   XM_006244676
VERSION     XM_006244676.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006244676.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006244676.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7615
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7615
                     /gene="Phf3"
                     /note="PHD finger protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 40
                     ESTs, 4 long SRA reads, 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 125 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:363210"
                     /db_xref="RGD:1304925"
     CDS             361..6159
                     /gene="Phf3"
                     /codon_start=1
                     /product="PHD finger protein 3 isoform X4"
                     /protein_id="XP_006244738.1"
                     /db_xref="GeneID:363210"
                     /db_xref="RGD:1304925"
                     /translation="MDEGVVKESGNDTIDEEELILPNRSLRDRVEDNSVRSPRKSPRL
                     MAQEQVRSLRQSTIAKRSNAAPLSTKKPSGKTFSTSKAGVKPPERCQGKEEVYASLKS
                     EHPKESRRNSRHAEHMDMVLEVSASSADSPVPSCVGMKEAAELHPRHACNNQGEVSAP
                     SPDLSCSPPSEASASAGVGGKRTEALMECKTSSSPLFKVSVKEDEQSDLVSGELDDTI
                     EGVNAVGRLEQESEEIKFSCEGDRMSTEPESSDVSSDSACTDKNKTEKNEGAQCHLEL
                     KNTVDIVDKPENSPPSNQMEMLDYGEDVGTNDAQLQSTEFTKSHLEEVDTCAFEPETS
                     TFENTICDVPDQNSKQLNITQSIKMETSNLQDDRSGLGPKNMKSKHTKSVTHSKPSMT
                     IETPRKTVAVKPEVGHSKTKSNAKTMKRNADEPEPQPDCQRPVKVRKKQVDKDLKSQS
                     CNSGVKSVKGQVHSVLKKIPQDQTAMQISKPLTHSVNDKLPGHSGHSLEKPPHPGHTG
                     HLVHSNQKQSHKPQPQAGAVRVTSHVRDEHEHPGTEHPKEEDKLKPKKLDRNLQPRQR
                     RSSRSFSLDEPPLFIPDNIATVKKEGSDQTTSVENKYMWTPSKQCGFCKKPHGNRFMV
                     GCGRCDDWFHGDCVGLSLSQAQQMGEEDKEYVCIRCCAEEDKKTDILDTETLETQASL
                     EAHSEDKRVECGKLTSSSSKHSVTEDKHRHMDDPGRHKVKIVKRDSGEGKTSSDSRDN
                     EIKKWQLAPLRKLGQPLLPRRSSEEKSEKIAKDSAALTCAGEKAARSGTHEKQETKKK
                     KVEKGGPNVHPPAAAAIKPSADQIRQSVRHSLKDILMKRLTDSNLKIPEEKSAKVATK
                     IEKELFSFFRDTDAKYKNKYRSLMFNLKDPKNNILFKKVLKGEVTPDHLIRMSPEELA
                     SKELAAWRRRENRHTIEMIEKEQREVERRPITKITHKGEIEIESDAPMKEQEAAMEIQ
                     EPSSANKSSEKPEASEKQKEELDSTSKDTTSQHRQHLFDLNCKICIGRMAPPVDDLSP
                     KTVKVVVGGARKHSDNEAESIADALSSTTNILASEFFEEEKQESPKSTFSPTPRPEMP
                     GTVEVESTFLARLNFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRIS
                     PQTVWDYVEKIKASGTKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQV
                     KDMYLIPLGAADKIPHPLVPFDGPGLELHRPNLLLGLIIRQKLKRQHSASAGPSHTAE
                     TPESAPISLPPDKKGKMESSTEEAAEEESDFFNSFTTVLHKQRNKPPQPPQEDLPTAA
                     EPLMEVTKQEPPKPLRFLPGVLIGWENQPSTLELANKPLPVDDILQSLLGTTGQVYEQ
                     AQPVVEQSTLKEIPFINDQTTPKVEKIDKVEVTEGEAKEIKVKAENVSESTGKNSGVE
                     ETSLVGSSSISPGPLASLSLRGKPPDVSTEAFLTNLSIPSKQEETVENKERTLKRPLL
                     QDQENSSQDNRTCSNSPCRPSTGKGSVDGNVSCSENLVANTRSPQFINLKRDPRQAAG
                     RSQQTVSDSKDGESCRNGERHSVCAPSYNREPVEPVSGEGKPSSLEKSSCVEQSDDSE
                     AVPNSSSVENSNSSQAEQANPLQEDILTQNIETIHPFRRGSATSSSHFEGGNTCQSEF
                     PSKSINFTPRSTSPRASTNFSPMRPQQPNLQHLKSSPPGFPFPGPQNFPPQSVFGFPP
                     HLPPPLLPPPGFGFPQNPPMAPWPPVHVPGQPQRMMGPLSQASRYMGPQNFYQVKDIR
                     RPERRHSDPWGRQDQQQPDRPFNRGKGDRQRFYSDSHHLKRDRHDKEWEQESERHRHR
                     DRSQEKDRDRKSKEEAHKDKERPRLSHSDRAADGKANRESKSADKKPDRPKGEDHEKE
                     KEREKSKHREGEKDRERYHKDRDHTDRAKSKR"
ORIGIN      
        1 gggaacggta aacagtggtg tcacgtgacg cggccccgct cttgctcccg cgctgtcgcc
       61 gcggtcgcac gccgatggct gcgggctctc gcggcgccgc acaagctcca cgaggcgagc
      121 gacccccggg ctcagggaag cagcgactgc agctcggacg gggagggcgg agcgcaggca
      181 ggccgtagtg tcgtcaccac ggcggcgcgg gccgaggagc cccgagccga ggcagcaacg
      241 ccgacgccct gcgcgcaccc cctccgcggc cccctcctcc gcggccccgc ggcctccatc
      301 ttcctctagc tgccggtggc agcgctcgtc tgcggagcgg ttgttggtct tgacgatatt
      361 atggatgaag gagttgttaa agaaagtggt aatgatacca ttgatgaaga agaattgatt
      421 ttacctaaca ggagtttgag ggacagagta gaagacaatt cagtaagatc accaagaaaa
      481 tcacctcgtt taatggcaca agaacaagta agaagtttgc gacaaagcac tattgccaag
      541 cgttcaaatg cagcacctct aagcacaaaa aagccatctg ggaagacttt ctctacctct
      601 aaagcagggg tgaaaccacc agaaagatgt cagggtaaag aagaagttta tgcatcactg
      661 aaatctgagc accctaagga gagcagaagg aatagccgac atgctgaaca catggacatg
      721 gtgctggaag tctcagcatc ttcagctgat tctccagtgc catcttgtgt cggaatgaag
      781 gaagcagctg agctccatcc caggcatgcg tgtaataacc agggcgaagt gagtgcgcca
      841 tccccggact taagttgttc gcctccctca gaggctagtg ctagtgctgg tgtgggagga
      901 aagagaaccg aagctctgat ggagtgtaag actagcagta gcccattatt taaggtttca
      961 gttaaagagg atgagcaaag tgaccttgtt tccggtgaac tggatgacac cattgaagga
     1021 gtgaatgcag tgggaagact tgagcaagag tcagaggaga taaagttctc ctgcgaaggt
     1081 gaccggatga gcacggaacc tgaatcttct gatgtatcca gtgactctgc ttgtaccgat
     1141 aaaaataaga cagaaaagaa tgaaggggcg cagtgtcatt tggaattgaa gaatactgtg
     1201 gatattgttg ataaacctga gaactctcct ccaagcaatc aaatggaaat gctggactat
     1261 ggtgaggacg tggggactaa tgatgctcag ttacagagca cagagtttac taagtcacat
     1321 ttggaggagg ttgacacttg tgcttttgaa ccagaaacta gtacttttga aaatactatt
     1381 tgtgatgttc ctgaccaaaa ttcaaagcaa ttaaatatta ctcaaagtat taaaatggaa
     1441 acatcaaatc ttcaggatga tagaagtggt ttagggccca aaaacatgaa atccaaacac
     1501 acaaaatctg taactcattc taaaccaagc atgaccatag agacaccaag aaaaactgtg
     1561 gcagtaaagc ctgaagtagg tcacagcaaa actaaatcta atgccaagac tatgaagcga
     1621 aatgctgatg aaccagagcc tcagcctgat tgtcagaggc cagtcaaagt gagaaagaaa
     1681 caagttgata aggacttgaa gagtcagagt tgtaattctg gagttaaatc tgtgaaaggc
     1741 caagtccatt ctgtattgaa aaaaataccc caggatcaaa ctgcaatgca aatttccaaa
     1801 cctttaactc attctgttaa tgataaactt cctggtcatt ctggtcactc cttagagaag
     1861 cctcctcatc ctggacacac tggacactta gtgcattcca atcagaagca gagtcataag
     1921 cctcagccac aggcgggagc ggtgagggtc actagccatg tgagggatga gcatgagcat
     1981 ccaggcactg agcaccctaa ggaggaggac aaactgaagc caaaaaaact cgataggaat
     2041 ctacagcctc gccaaaggag aagcagcaga agtttttctc tggatgagcc tccactgttt
     2101 atcccagaca acatagctac tgtaaaaaaa gaagggtcag atcagaccac ctctgttgaa
     2161 aacaaatata tgtggactcc cagcaagcaa tgtgggtttt gcaaaaaacc acatggcaac
     2221 aggtttatgg ttggctgtgg gagatgtgat gactggttcc atggggactg tgttggacta
     2281 agtctttctc aagcgcagca aatgggagag gaagacaaag agtatgtttg cataagatgc
     2341 tgtgctgaag aagataaaaa gacggacata ctagatacag agactttgga aacccaggct
     2401 tccctcgaag cccacagtga agataaaagg gtggagtgtg gaaagctgac atcgtcgtca
     2461 tcgaagcact cggtcaccga ggataaacac agacacatgg acgaccctgg caggcacaag
     2521 gtcaaaattg taaaacggga ctctggtgag ggaaaaactt cctctgatag tagagataat
     2581 gaaattaaaa aatggcagct agcccctctt cgcaagttgg gccaaccact tttacctcga
     2641 aggtcatcag aagaaaaaag cgaaaaaata gcaaaagact ctgcagctct cacctgcgca
     2701 ggagagaaag cagcgagatc aggtactcat gagaagcaag agacaaagaa gaagaaagtt
     2761 gaaaagggtg gacctaatgt gcaccctcct gccgctgctg ccatcaagcc ttctgcagat
     2821 cagatcagac agagtgtccg gcactccctt aaggatattc ttatgaaaag acttacggac
     2881 tcaaacttga agatcccaga ggaaaagtca gcaaaggttg ccacaaaaat tgaaaaggaa
     2941 cttttctctt tttttcggga cacagatgcc aagtataaga ataaatacag aagtttgatg
     3001 ttcaatctaa aagatcctaa gaacaatata ttatttaaga aagttctaaa aggagaagta
     3061 acccctgatc atcttataag aatgagtcca gaagaactag cgtccaaaga gttagccgcg
     3121 tggagacgga gggaaaacag acacaccata gagatgatcg agaaggaaca gagagaagtg
     3181 gaaagaagac caatcacgaa aataactcac aaaggtgaga tagaaatcga gagtgacgcc
     3241 ccgatgaaag agcaggaagc agccatggag atccaggaac cttcttcagc caataagtcc
     3301 tcggagaagc cagaagcatc cgagaaacaa aaagaagagc ttgactccac atccaaagac
     3361 accaccagtc aacatagaca gcatcttttt gacctgaact gcaaaatatg cataggtcga
     3421 atggcaccac ctgtagatga tctttctccc aaaaccgtga aggttgttgt gggcggcgcc
     3481 cgtaaacact ccgacaacga ggcggaaagt atagcggatg cgttgtcttc aacgacaaat
     3541 attctggcct ctgaattctt tgaggaggag aaacaagaat ctcccaaatc aacattctct
     3601 cccactccac gtccagagat gcctggaact gtggaggttg agtcaacctt cctggctcga
     3661 ttgaacttca tctggaaagg ttttatcaat atgccatctg tggcgaagtt cgttaccaaa
     3721 gcctacccag tgtctggatc ccccgagtac ttgacagagg acctaccaga tagcattcaa
     3781 gtaggtggca ggatatcgcc tcagactgtt tgggattatg tagaaaaaat aaaagcatca
     3841 ggcaccaagg aaatctgtgt ggttcgtttc acaccagtaa ctgaagaaga tcagatttct
     3901 tacactttgc tgtttgcgta cttcagtagc agaaagcgct atggtgtagc cgctaacaac
     3961 atgaagcagg ttaaagatat gtaccttatt ccattgggcg ctgcagataa aattccacac
     4021 cctctcgtgc cttttgatgg acctgggctt gagctgcaca gacctaatct gttgttgggt
     4081 ctgattattc gtcagaagct gaagcggcag cacagcgcta gtgcgggccc cagtcacaca
     4141 gccgagactc ccgagagtgc cccaatatcc ttgccacctg acaaaaaagg taaaatggag
     4201 tcatccacag aggaagcagc agaggaagag agtgactttt tcaattcctt tacaactgtg
     4261 ttacacaagc agagaaacaa gccccctcag cctcctcagg aggacttgcc aactgcagct
     4321 gaacctctca tggaagtcac caagcaggag ccacccaaac ccttaaggtt ccttcctggg
     4381 gtcctaattg gctgggaaaa tcaaccttct actctggagt tggcaaataa acctcttcct
     4441 gtggatgaca tactccaaag cctgttgggc accactggcc aggtttatga gcaggctcag
     4501 ccagttgtag agcaaagcac tcttaaagaa attcctttta taaatgatca aactacccca
     4561 aaagtagaga aaatagataa agtggaagtg actgaaggtg aagccaagga gataaaagtt
     4621 aaagcagaaa atgtttcaga gtctacaggt aaaaactcag gagtagaaga aacttcactg
     4681 gtaggctcct cttccatttc tccagggcct ttggcaagtc ttagtctgag agggaaacca
     4741 ccagatgtct ctacagaagc attcttaaca aatttatcaa ttccttcaaa acaagaggaa
     4801 actgtggaaa acaaagagag aacattaaaa agaccactgc tccaagatca ggagaacagt
     4861 tcgcaagata ataggacttg tagtaactct ccttgccggc ctagcaccgg aaagggaagc
     4921 gtagatggaa atgtgagctg cagtgagaat cttgttgcta acacaagatc cccacagttt
     4981 atcaacctga aaagggatcc tcggcaagca gcaggacgga gccagcagac agtttcagac
     5041 agcaaggatg gagagagctg cagaaacgga gaaaggcatt ctgtgtgtgc tccatcatac
     5101 aacagagagc ccgtagaacc cgtcagtgga gagggaaagc cctcttctct ggagaagagc
     5161 tcgtgtgtag agcagagtga tgattcagag gctgtgccaa actcatcctc ggtagaaaac
     5221 tcaaattctt cacaagcaga acaagccaat cctttacaag aggatatttt aacacaaaat
     5281 attgaaacca tccacccatt tagaagagga tcagctacat catcatctca ttttgaaggt
     5341 ggaaacacat gccagtcaga atttccttct aaaagcatca actttactcc caggagtacc
     5401 agcccccgag cgagtacaaa cttttcacca atgaggccac agcagcccaa cctccagcac
     5461 ctcaagtcta gtcctcctgg attcccattt ccaggacccc agaatttccc tccccaaagt
     5521 gtgtttggat tcccaccaca tttgccacct ccgttacttc cgcctccagg ctttggcttt
     5581 cctcagaatc cccccatggc tccttggcca cctgttcacg tcccgggcca accacagcgc
     5641 atgatggggc ccctttcaca agcatcaagg tacatgggac cacaaaattt ttatcaggta
     5701 aaagatattc ggagaccaga aaggcgacat agtgacccat ggggtaggca agaccaacag
     5761 caaccagata ggccatttaa taggggtaaa ggggaccgtc agagatttta cagcgattcg
     5821 caccacttga aaagagaccg tcatgacaag gaatgggagc aagaatctga aaggcacagg
     5881 cacagagaca gaagccaaga aaaggacaga gacaggaaaa gcaaagagga agcacataaa
     5941 gataaggaga gaccacggtt atcacacagc gatcgagcag cagatggcaa agccaacaga
     6001 gagagtaaga gtgcagacaa gaaaccggac aggcctaaag gtgaagacca tgaaaaggag
     6061 aaagagagag agaagagcaa gcacagagag ggggagaagg acagagagcg gtaccacaaa
     6121 gacagggacc acactgacag ggcgaagagc aaaaggtgaa acgcaaggct gcttcagcat
     6181 catactcaaa actgtccgtg tgtctttata agattgccgc ctggtaggcc tgtgccgtct
     6241 tagccctcgc tgttggaggt gggcagagca gtaaactgtg ctggtgcgga atcctgtgca
     6301 ccagtgcccc cttcacacca ctgtcctacc tacaggaatt taatattttt aaagttttac
     6361 aatactgtat gtatattcaa agatttgttt aattaatatg caataaaggc ttagaaattt
     6421 tagttttatt ccttaattgg taaatatggt taactatgaa atatatttcc tgcctctagt
     6481 gaatgtcctt tatataatga ctaatttgga agtaatttgt gctctgtaca tttgttttca
     6541 attgcactgt ttttaaagaa aatgtagagg agcggcaaga aagccgagac ttcccagtca
     6601 gaccatcctg acttaggggc agcttttgac tgtgaatcaa gagcccaggg agtccatttg
     6661 ttgctttaat ctgtgctcac tgaaggcggt tctgaccctg tactgcagtt tgtggtaggc
     6721 catatccctt tcctttctgc tcttcagaaa cttgaatact taagcttgta catgatcttg
     6781 tgttttgcta tcctttttac tgtaaaatgt aaatatttta agggatattt tgattctaaa
     6841 tatgataaaa gaatttctca cctactttgt gtgtgtgatt tgaaattcaa tagtaaaagc
     6901 aattcttcga agcttctttt ccttgagaca ttattctttt actcagccaa gaatatgtag
     6961 acagactgtc agacattcct aagcgaggaa tggttcttac agcttacatg actcacatct
     7021 accgagccta gtgtttagaa ctgccagtag ggagctttgc agtcagccat ttagttgcca
     7081 ttatgtttct gaaaacttat atatgattaa actttgttat acagactcag tagtcattgt
     7141 gaaactgcag acttttaagt gaaatgtatt ttgatttttg attatatttt tttggaaaat
     7201 gatttgtttg tagggcaact gtaaaattga gtatgccagt ttgacttgaa atagaaaaca
     7261 cacaagactt gttctttcag atctaaactt actcacaccc cgaaatccat cctgtgctga
     7321 tgtttaaaac ctaaagcagt agctgccggc tgatgctaac actccgcagc cagacaggag
     7381 ccaccagtgt gcttatctac ctgttcccat gaagaatccc ggtaactcca caaaattaag
     7441 aaaaccgttt ctaaaggagg attaccatgt ttttgaaacc agattaacct tcccaaagaa
     7501 aatagtagtc aaacattttg tctgaattgc aaggattaca atattttttc ccatctttgc
     7561 ctctgaaatt taaatgaagt ttttccattt aaataaagta tttttaatgt cttgt
//
