LOCUS       NM_001108791            7863 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus PHD finger protein 3 (Phf3), mRNA.
ACCESSION   NM_001108791 XM_001053271 XM_343548
VERSION     NM_001108791.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7863)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473965.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_343548.3, XM_001053271.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..7863
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q21"
     gene            1..7863
                     /gene="Phf3"
                     /note="PHD finger protein 3"
                     /db_xref="GeneID:363210"
                     /db_xref="RGD:1304925"
     exon            1..321
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            322..590
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     CDS             347..6409
                     /gene="Phf3"
                     /codon_start=1
                     /product="PHD finger protein 3"
                     /protein_id="NP_001102261.1"
                     /db_xref="GeneID:363210"
                     /db_xref="RGD:1304925"
                     /translation="MDIVDTFNHLIPTEHLDDALFLGSNLENEVCEDFSTSQNVLEDS
                     LKNMLSDKDPMLGSASNQFCLPVLDSNDPNFQMPCTTVVGLDDIMDEGVVKESGNDTI
                     DEEELILPNRSLRDRVEDNSVRSPRKSPRLMAQEQVRSLRQSTIAKRSNAAPLSTKKP
                     SGKTFSTSKAGVKPPERCQGKEEVYASLKSEHPKESRRNSRHAEHMDMVLEVSASSAD
                     SPVPSCVGMKEAAELHPRHACNNQGEVSAPSPDLSCSPPSEASASAGVGGKRTEALME
                     CKTSSSPLFKVSVKEDEQSDLVSGELDDTIEGVNAVGRLEQESEEIKFSCEGDRMSTE
                     PESSDVSSDSACTDKNKTEKNEGAQCHLELKNTVDIVDKPENSPPSNQMEMLDYGEDV
                     GTNDAQLQSTEFTKSHLEEVDTCAFEPETSTFENTICDVPDQNSKQLNITQSIKMETS
                     NLQDDRSGLGPKNMKSKHTKSVTHSKPSMTIETPRKTVAVKPEVGHSKTKSNAKTMKR
                     NADEPEPQPDCQRPVKVRKKQVDKDLKSQSCNSGVKSVKGQVHSVLKKIPQDQTAMQI
                     SKPLTHSVNDKLPGHSGHSLEKPPHPGHTGHLVHSNQKQSHKPQPQAGAVRVTSHVRD
                     EHEHPGTEHPKEEDKLKPKKLDRNLQPRQRRSSRSFSLDEPPLFIPDNIATVKKEGSD
                     QTTSVENKYMWTPSKQCGFCKKPHGNRFMVGCGRCDDWFHGDCVGLSLSQAQQMGEED
                     KEYVCIRCCAEEDKKTDILDTETLETQASLEAHSEDKRVECGKLTSSSSKHSVTEDKH
                     RHMDDPGRHKVKIVKRDSGEGKTSSDSRDNEIKKWQLAPLRKLGQPLLPRRSSEEKSE
                     KIAKDSAALTCAGEKAARSGTHEKQETKKKKVEKGGPNVHPPAAAAIKPSADQIRQSV
                     RHSLKDILMKRLTDSNLKIPEEKSAKVATKIEKELFSFFRDTDAKYKNKYRSLMFNLK
                     DPKNNILFKKVLKGEVTPDHLIRMSPEELASKELAAWRRRENRHTIEMIEKEQREVER
                     RPITKITHKGEIEIESDAPMKEQEAAMEIQEPSSANKSSEKPEASEKQKEELDSTSKD
                     TTSQHRQHLFDLNCKICIGRMAPPVDDLSPKTVKVVVGGARKHSDNEAESIADALSST
                     TNILASEFFEEEKQESPKSTFSPTPRPEMPGTVEVESTFLARLNFIWKGFINMPSVAK
                     FVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASGTKEICVVRFTPVT
                     EEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIPLGAADKIPHPLVPFDGPGLEL
                     HRPNLLLGLIIRQKLKRQHSASAGPSHTAETPESAPISLPPDKKGKMESSTEEAAEEE
                     SDFFNSFTTVLHKQRNKPPQPPQEDLPTAAEPLMEVTKQEPPKPLRFLPGVLIGWENQ
                     PSTLELANKPLPVDDILQSLLGTTGQVYEQAQPVVEQSTLKEIPFINDQTTPKVEKID
                     KVEVTEGEAKEIKVKAENVSESTGKNSGVEETSLVGSSSISPGPLASLSLRGKPPDVS
                     TEAFLTNLSIPSKQEETVENKERTLKRPLLQDQENSSQDNRTCSNSPCRPSTGKGSVD
                     GNVSCSENLVANTRSPQFINLKRDPRQAAGRSQQTVSDSKDGESCRNGERHSVCAPSY
                     NREPVEPVSGEGKPSSLEKSSCVEQSDDSEAVPNSSSVENSNSSQAEQANPLQEDILT
                     QNIETIHPFRRGSATSSSHFEGGNTCQSEFPSKSINFTPRSTSPRASTNFSPMRPQQP
                     NLQHLKSSPPGFPFPGPQNFPPQSVFGFPPHLPPPLLPPPGFGFPQNPPMAPWPPVHV
                     PGQPQRMMGPLSQASRYMGPQNFYQVKDIRRPERRHSDPWGRQDQQQPDRPFNRGKGD
                     RQRFYSDSHHLKRDRHDKEWEQESERHRHRDRSQEKDRDRKSKEEAHKDKERPRLSHS
                     DRAADGKANRESKSADKKPDRPKGEDHEKEKEREKSKHREGEKDRERYHKDRDHTDRA
                     KSKR"
     exon            591..752
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            753..2472
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            2473..2788
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            2789..2972
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            2973..3277
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            3278..3394
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            3395..3526
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            3527..3665
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            3666..3861
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            3862..4009
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            4010..4099
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            4100..4295
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
     exon            4296..7863
                     /gene="Phf3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcacgtgac gcggccccgc tcttgctccc gcgctgtcgc cgcggtcgca cgccgatggc
       61 tgcgggctct cgcggcgccg cacaagctcc acgaggcgag cgacccccgg gctcagggaa
      121 gcagcgactg cagctcggac ggggagggcg gagcgcaggc aggccgtagt gtcgtcacca
      181 cggcggcgcg ggccgaggag ccccgagccg aggcagcaac gccgacgccc tgcgcgcacc
      241 ccctccgcgg ccccctcctc cgcggccccg cggcctccat cttcctctag ctgccggtgg
      301 cagcgctcgt ctgcggagcg gggttgaaag acacacagaa gtcttcatgg atatagttga
      361 tacatttaat catttaattc ctactgaaca cttagatgat gccctatttc taggatccaa
      421 cctggagaat gaagtctgtg aggattttag tacaagtcaa aatgtcttag aggactcgct
      481 gaagaacatg ctcagcgata aggatcctat gctaggatct gcaagtaacc agttctgttt
      541 gcctgttttg gatagcaatg atcccaattt ccagatgcct tgtacaacag ttgttggtct
      601 tgacgatatt atggatgaag gagttgttaa agaaagtggt aatgatacca ttgatgaaga
      661 agaattgatt ttacctaaca ggagtttgag ggacagagta gaagacaatt cagtaagatc
      721 accaagaaaa tcacctcgtt taatggcaca agaacaagta agaagtttgc gacaaagcac
      781 tattgccaag cgttcaaatg cagcacctct aagcacaaaa aagccatctg ggaagacttt
      841 ctctacctct aaagcagggg tgaaaccacc agaaagatgt cagggtaaag aagaagttta
      901 tgcatcactg aaatctgagc accctaagga gagcagaagg aatagccgac atgctgaaca
      961 catggacatg gtgctggaag tctcagcatc ttcagctgat tctccagtgc catcttgtgt
     1021 cggaatgaag gaagcagctg agctccatcc caggcatgcg tgtaataacc agggcgaagt
     1081 gagtgcgcca tccccggact taagttgttc gcctccctca gaggctagtg ctagtgctgg
     1141 tgtgggagga aagagaaccg aagctctgat ggagtgtaag actagcagta gcccattatt
     1201 taaggtttca gttaaagagg atgagcaaag tgaccttgtt tccggtgaac tggatgacac
     1261 cattgaagga gtgaatgcag tgggaagact tgagcaagag tcagaggaga taaagttctc
     1321 ctgcgaaggt gaccggatga gcacggaacc tgaatcttct gatgtatcca gtgactctgc
     1381 ttgtaccgat aaaaataaga cagaaaagaa tgaaggggcg cagtgtcatt tggaattgaa
     1441 gaatactgtg gatattgttg ataaacctga gaactctcct ccaagcaatc aaatggaaat
     1501 gctggactat ggtgaggacg tggggactaa tgatgctcag ttacagagca cagagtttac
     1561 taagtcacat ttggaggagg ttgacacttg tgcttttgaa ccagaaacta gtacttttga
     1621 aaatactatt tgtgatgttc ctgaccaaaa ttcaaagcaa ttaaatatta ctcaaagtat
     1681 taaaatggaa acatcaaatc ttcaggatga tagaagtggt ttagggccca aaaacatgaa
     1741 atccaaacac acaaaatctg taactcattc taaaccaagc atgaccatag agacaccaag
     1801 aaaaactgtg gcagtaaagc ctgaagtagg tcacagcaaa actaaatcta atgccaagac
     1861 tatgaagcga aatgctgatg aaccagagcc tcagcctgat tgtcagaggc cagtcaaagt
     1921 gagaaagaaa caagttgata aggacttgaa gagtcagagt tgtaattctg gagttaaatc
     1981 tgtgaaaggc caagtccatt ctgtattgaa aaaaataccc caggatcaaa ctgcaatgca
     2041 aatttccaaa cctttaactc attctgttaa tgataaactt cctggtcatt ctggtcactc
     2101 cttagagaag cctcctcatc ctggacacac tggacactta gtgcattcca atcagaagca
     2161 gagtcataag cctcagccac aggcgggagc ggtgagggtc actagccatg tgagggatga
     2221 gcatgagcat ccaggcactg agcaccctaa ggaggaggac aaactgaagc caaaaaaact
     2281 cgataggaat ctacagcctc gccaaaggag aagcagcaga agtttttctc tggatgagcc
     2341 tccactgttt atcccagaca acatagctac tgtaaaaaaa gaagggtcag atcagaccac
     2401 ctctgttgaa aacaaatata tgtggactcc cagcaagcaa tgtgggtttt gcaaaaaacc
     2461 acatggcaac aggtttatgg ttggctgtgg gagatgtgat gactggttcc atggggactg
     2521 tgttggacta agtctttctc aagcgcagca aatgggagag gaagacaaag agtatgtttg
     2581 cataagatgc tgtgctgaag aagataaaaa gacggacata ctagatacag agactttgga
     2641 aacccaggct tccctcgaag cccacagtga agataaaagg gtggagtgtg gaaagctgac
     2701 atcgtcgtca tcgaagcact cggtcaccga ggataaacac agacacatgg acgaccctgg
     2761 caggcacaag gtcaaaattg taaaacggga ctctggtgag ggaaaaactt cctctgatag
     2821 tagagataat gaaattaaaa aatggcagct agcccctctt cgcaagttgg gccaaccact
     2881 tttacctcga aggtcatcag aagaaaaaag cgaaaaaata gcaaaagact ctgcagctct
     2941 cacctgcgca ggagagaaag cagcgagatc aggtactcat gagaagcaag agacaaagaa
     3001 gaagaaagtt gaaaagggtg gacctaatgt gcaccctcct gccgctgctg ccatcaagcc
     3061 ttctgcagat cagatcagac agagtgtccg gcactccctt aaggatattc ttatgaaaag
     3121 acttacggac tcaaacttga agatcccaga ggaaaagtca gcaaaggttg ccacaaaaat
     3181 tgaaaaggaa cttttctctt tttttcggga cacagatgcc aagtataaga ataaatacag
     3241 aagtttgatg ttcaatctaa aagatcctaa gaacaatata ttatttaaga aagttctaaa
     3301 aggagaagta acccctgatc atcttataag aatgagtcca gaagaactag cgtccaaaga
     3361 gttagccgcg tggagacgga gggaaaacag acacaccata gagatgatcg agaaggaaca
     3421 gagagaagtg gaaagaagac caatcacgaa aataactcac aaaggtgaga tagaaatcga
     3481 gagtgacgcc ccgatgaaag agcaggaagc agccatggag atccaggaac cttcttcagc
     3541 caataagtcc tcggagaagc cagaagcatc cgagaaacaa aaagaagagc ttgactccac
     3601 atccaaagac accaccagtc aacatagaca gcatcttttt gacctgaact gcaaaatatg
     3661 cataggtcga atggcaccac ctgtagatga tctttctccc aaaaccgtga aggttgttgt
     3721 gggcggcgcc cgtaaacact ccgacaacga ggcggaaagt atagcggatg cgttgtcttc
     3781 aacgacaaat attctggcct ctgaattctt tgaggaggag aaacaagaat ctcccaaatc
     3841 aacattctct cccactccac gtccagagat gcctggaact gtggaggttg agtcaacctt
     3901 cctggctcga ttgaacttca tctggaaagg ttttatcaat atgccatctg tggcgaagtt
     3961 cgttaccaaa gcctacccag tgtctggatc ccccgagtac ttgacagagg acctaccaga
     4021 tagcattcaa gtaggtggca ggatatcgcc tcagactgtt tgggattatg tagaaaaaat
     4081 aaaagcatca ggcaccaagg aaatctgtgt ggttcgtttc acaccagtaa ctgaagaaga
     4141 tcagatttct tacactttgc tgtttgcgta cttcagtagc agaaagcgct atggtgtagc
     4201 cgctaacaac atgaagcagg ttaaagatat gtaccttatt ccattgggcg ctgcagataa
     4261 aattccacac cctctcgtgc cttttgatgg acctgggctt gagctgcaca gacctaatct
     4321 gttgttgggt ctgattattc gtcagaagct gaagcggcag cacagcgcta gtgcgggccc
     4381 cagtcacaca gccgagactc ccgagagtgc cccaatatcc ttgccacctg acaaaaaagg
     4441 taaaatggag tcatccacag aggaagcagc agaggaagag agtgactttt tcaattcctt
     4501 tacaactgtg ttacacaagc agagaaacaa gccccctcag cctcctcagg aggacttgcc
     4561 aactgcagct gaacctctca tggaagtcac caagcaggag ccacccaaac ccttaaggtt
     4621 ccttcctggg gtcctaattg gctgggaaaa tcaaccttct actctggagt tggcaaataa
     4681 acctcttcct gtggatgaca tactccaaag cctgttgggc accactggcc aggtttatga
     4741 gcaggctcag ccagttgtag agcaaagcac tcttaaagaa attcctttta taaatgatca
     4801 aactacccca aaagtagaga aaatagataa agtggaagtg actgaaggtg aagccaagga
     4861 gataaaagtt aaagcagaaa atgtttcaga gtctacaggt aaaaactcag gagtagaaga
     4921 aacttcactg gtaggctcct cttccatttc tccagggcct ttggcaagtc ttagtctgag
     4981 agggaaacca ccagatgtct ctacagaagc attcttaaca aatttatcaa ttccttcaaa
     5041 acaagaggaa actgtggaaa acaaagagag aacattaaaa agaccactgc tccaagatca
     5101 ggagaacagt tcgcaagata ataggacttg tagtaactct ccttgccggc ctagcaccgg
     5161 aaagggaagc gtagatggaa atgtgagctg cagtgagaat cttgttgcta acacaagatc
     5221 cccacagttt atcaacctga aaagggatcc tcggcaagca gcaggacgga gccagcagac
     5281 agtttcagac agcaaggatg gagagagctg cagaaacgga gaaaggcatt ctgtgtgtgc
     5341 tccatcatac aacagagagc ccgtagaacc cgtcagtgga gagggaaagc cctcttctct
     5401 ggagaagagc tcgtgtgtag agcagagtga tgattcagag gctgtgccaa actcatcctc
     5461 ggtagaaaac tcaaattctt cacaagcaga acaagccaat cctttacaag aggatatttt
     5521 aacacaaaat attgaaacca tccacccatt tagaagagga tcagctacat catcatctca
     5581 ttttgaaggt ggaaacacat gccagtcaga atttccttct aaaagcatca actttactcc
     5641 caggagtacc agcccccgag cgagtacaaa cttttcacca atgaggccac agcagcccaa
     5701 cctccagcac ctcaagtcta gtcctcctgg attcccattt ccaggacccc agaatttccc
     5761 tccccaaagt gtgtttggat tcccaccaca tttgccacct ccgttacttc cgcctccagg
     5821 ctttggcttt cctcagaatc cccccatggc tccttggcca cctgttcacg tcccgggcca
     5881 accacagcgc atgatggggc ccctttcaca agcatcaagg tacatgggac cacaaaattt
     5941 ttatcaggta aaagatattc ggagaccaga aaggcgacat agtgacccat ggggtaggca
     6001 agaccaacag caaccagata ggccatttaa taggggtaaa ggggaccgtc agagatttta
     6061 cagcgattcg caccacttga aaagagaccg tcatgacaag gaatgggagc aagaatctga
     6121 aaggcacagg cacagagaca gaagccaaga aaaggacaga gacaggaaaa gcaaagagga
     6181 agcacataaa gataaggaga gaccacggtt atcacacagc gatcgagcag cagatggcaa
     6241 agccaacaga gagagtaaga gtgcagacaa gaaaccggac aggcctaaag gtgaagacca
     6301 tgaaaaggag aaagagagag agaagagcaa gcacagagag ggggagaagg acagagagcg
     6361 gtaccacaaa gacagggacc acactgacag ggcgaagagc aaaaggtgaa acgcaaggct
     6421 gcttcagcat catactcaaa actgtccgtg tgtctttata agattgccgc ctggtaggcc
     6481 tgtgccgtct tagccctcgc tgttggaggt gggcagagca gtaaactgtg ctggtgcgga
     6541 atcctgtgca ccagtgcccc cttcacacca ctgtcctacc tacaggaatt taatattttt
     6601 aaagttttac aatactgtat gtatattcaa agatttgttt aattaatatg caataaaggc
     6661 ttagaaattt tagttttatt ccttaattgg taaatatggt taactatgaa atatatttcc
     6721 tgcctctagt gaatgtcctt tatataatga ctaatttgga agtaatttgt gctctgtaca
     6781 tttgttttca attgcactgt ttttaaagaa aatgtagagg agcggcaaga aagccgagac
     6841 ttcccagtca gaccatcctg acttaggggc agcttttgac tgtgaatcaa gagcccaggg
     6901 agtccatttg ttgctttaat ctgtgctcac tgaaggcggt tctgaccctg tactgcagtt
     6961 tgtggtaggc catatccctt tcctttctgc tcttcagaaa cttgaatact taagcttgta
     7021 catgatcttg tgttttgcta tcctttttac tgtaaaatgt aaatatttta agggatattt
     7081 tgattctaaa tatgataaaa gaatttctca cctactttgt gtgtgtgatt tgaaattcaa
     7141 tagtaaaagc aattcttcga agcttctttt ccttgagaca ttattctttt actcagccaa
     7201 gaatatgtag acagactgtc agacattcct aagcgaggaa tggttcttac agcttacatg
     7261 actcacatct accgagccta gtgtttagaa ctgccagtag ggagctttgc agtcagccat
     7321 ttagttgcca ttatgtttct gaaaacttat atatgattaa actttgttat acagactcag
     7381 tagtcattgt gaaactgcag acttttaagt gaaatgtatt ttgatttttg attatatttt
     7441 tttggaaaat gatttgtttg tagggcaact gtaaaattga gtatgccagt ttgacttgaa
     7501 atagaaaaca cacaagactt gttctttcag atctaaactt actcacaccc cgaaatccat
     7561 cctgtgctga tgtttaaaac ctaaagcagt agctgccggc tgatgctaac actccgcagc
     7621 cagacaggag ccaccagtgt gcttatctac ctgttcccat gaagaatccc ggtaactcca
     7681 caaaattaag aaaaccgttt ctaaaggagg attaccatgt ttttgaaacc agattaacct
     7741 tcccaaagaa aatagtagtc aaacattttg tctgaattgc aaggattaca atattttttc
     7801 ccatctttgc ctctgaaatt taaatgaagt ttttccattt aaataaagta tttttaatgt
     7861 ctt
//
