LOCUS       NM_001398835            3384 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus PHD finger protein 24 (Phf24), mRNA.
ACCESSION   NM_001398835 XM_039110973
VERSION     NM_001398835.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3384)
  AUTHORS   Numakura,Y., Uemura,R., Tanaka,M., Izawa,T., Yamate,J.,
            Kuramoto,T., Kaneko,T., Mashimo,T., Yamamoto,T., Serikawa,T. and
            Kuwamura,M.
  TITLE     PHF24 is expressed in the inhibitory interneurons in rats
  JOURNAL   Exp Anim 70 (1), 137-143 (2021)
   PUBMED   33115988
  REMARK    GeneRIF: PHF24 is expressed in the inhibitory interneurons in rats.
REFERENCE   2  (bases 1 to 3384)
  AUTHORS   Gaillard,S., Lo Re,L., Mantilleri,A., Hepp,R., Urien,L.,
            Malapert,P., Alonso,S., Deage,M., Kambrun,C., Landry,M., Low,S.A.,
            Alloui,A., Lambolez,B., Scherrer,G., Le Feuvre,Y., Bourinet,E. and
            Moqrich,A.
  TITLE     GINIP, a Galphai-interacting protein, functions as a key modulator
            of peripheral GABAB receptor-mediated analgesia
  JOURNAL   Neuron 84 (1), 123-136 (2014)
   PUBMED   25242222
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Dec 27, 2021 this sequence version replaced XM_039110973.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ211775.1, SRR26643298.27030.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-153               JAXUCZ010000005.1  61939916-61940068
            154-535             JAXUCZ010000005.1  61956462-61956843
            536-721             JAXUCZ010000005.1  61957423-61957608
            722-800             JAXUCZ010000005.1  61960432-61960510
            801-1006            JAXUCZ010000005.1  61960798-61961003
            1007-1167           JAXUCZ010000005.1  61961306-61961466
            1168-1263           JAXUCZ010000005.1  61961789-61961884
            1264-3384           JAXUCZ010000005.1  61962205-61964325
FEATURES             Location/Qualifiers
     source          1..3384
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..3384
                     /gene="Phf24"
                     /gene_synonym="RGD1559864"
                     /note="PHD finger protein 24"
                     /db_xref="GeneID:500446"
                     /db_xref="RGD:1559864"
     exon            1..153
                     /gene="Phf24"
                     /gene_synonym="RGD1559864"
                     /inference="alignment:Splign:2.1.0"
     exon            154..535
                     /gene="Phf24"
                     /gene_synonym="RGD1559864"
                     /inference="alignment:Splign:2.1.0"
     CDS             158..1360
                     /gene="Phf24"
                     /gene_synonym="RGD1559864"
                     /note="Gai-interacting protein"
                     /codon_start=1
                     /product="PHD finger protein 24"
                     /protein_id="NP_001385764.1"
                     /db_xref="GeneID:500446"
                     /db_xref="RGD:1559864"
                     /translation="MGVLMSKRQTVEQVQKVSLAVSAFKDGLRDRPSVRRGGELPGSR
                     RGTVEGSVQQVQEEKEAEASAPGVQEESSSNRAAWERLRDGRGVEPEEFDRTSRFTPP
                     AFIRPTRKLDDDKPPDICLEPRESVVNDEMCDICEVWTAESLFPCRVCTRVFHDGCLR
                     RMGYLQGDSAVEVTEMAHTETGWSCYYCDNLNLLLTEEEMYSLTETFQRCKVIPDCSL
                     TLEDFVRYRHQAAKRGDSTRALSDEQEEQAARQFAALDPEHRGHVEWPDFLSHESLLL
                     LQQLRPQNSLLRLLTVKERERARATFLARGRGSTISEAECHQARHSWFCKRLAEAPSC
                     SVSISHVGPIADSSPAGSSSQSQEKALLPTEQESRFVDWPTFLRENVIYILAARPNSG
                     AIHLKPPG"
     exon            536..721
                     /gene="Phf24"
                     /gene_synonym="RGD1559864"
                     /inference="alignment:Splign:2.1.0"
     exon            722..800
                     /gene="Phf24"
                     /gene_synonym="RGD1559864"
                     /inference="alignment:Splign:2.1.0"
     exon            801..1006
                     /gene="Phf24"
                     /gene_synonym="RGD1559864"
                     /inference="alignment:Splign:2.1.0"
     exon            1007..1167
                     /gene="Phf24"
                     /gene_synonym="RGD1559864"
                     /inference="alignment:Splign:2.1.0"
     exon            1168..1263
                     /gene="Phf24"
                     /gene_synonym="RGD1559864"
                     /inference="alignment:Splign:2.1.0"
     exon            1264..3384
                     /gene="Phf24"
                     /gene_synonym="RGD1559864"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgctgccgc cgcctcagcc tgtcgcgccg cccgcgccgc ccgctcccgg tgctcggccc
       61 agcacgtcgg ctccggagcg gccgtgggca gcgcgggccc gcggcgtaga gtccgccggc
      121 ctcggatccg cgtcccgcac gcggactgtc ccgagccatg ggggtgttga tgtccaagcg
      181 gcagacagta gagcaggtgc agaaggtgag cctggctgtg tcagccttca aggatgggct
      241 acgggacagg ccttccgtta gacgtggggg tgagctacca gggtcccgcc gtggcactgt
      301 ggagggctct gttcagcaag tacaggagga gaaggaagcg gaggcaagtg cccccggggt
      361 ccaggaagag agcagcagca accgtgcagc ctgggagcgg ctccgagatg ggcgtggagt
      421 tgagcctgag gagtttgaca ggaccagtcg attcacgccc cctgccttca tccgccccac
      481 ccggaagctg gacgatgaca aacctccaga tatctgcttg gaaccccggg agtctgttgt
      541 caacgacgag atgtgtgata tctgtgaagt ctggaccgct gaaagcctct tcccgtgcag
      601 agtctgcacc agggttttcc acgatggctg cctgcgccgc atgggctacc tccaagggga
      661 cagtgccgtg gaggtgaccg agatggccca caccgagaca ggctggagct gctactactg
      721 tgacaacctc aacctgctgc ttactgagga ggagatgtac agcctcacgg agacctttca
      781 gcggtgcaaa gtcatccctg attgctccct gacactggag gactttgtgc gctaccgaca
      841 ccaggcggca aagcgaggag acagcaccag ggccctgagc gatgagcaag aggagcaggc
      901 ggcccgccag tttgcagcct tggaccctga acaccggggc cacgtagagt ggcccgactt
      961 cttgtcccac gagtcccttc tgttgctgca gcagctgcgt ccccagaact ctctactgag
     1021 gcttctcacc gtcaaggaga gggagcgagc tcgagccacc ttcctggcac ggggcagagg
     1081 gagcaccatc agcgaagcag agtgccacca agcccgacac tcttggttct gcaagcgcct
     1141 tgcagaggct ccttcctgca gcgtcagcat cagccatgtg ggtcctatag cagacagcag
     1201 cccggccggc agcagtagcc agagtcagga gaaggccctg ctgcccacag agcaggagtc
     1261 cagatttgtg gattggccca ccttcctgag agagaatgtc atctacatct tggctgctcg
     1321 tcctaacagt ggagcgattc acctgaagcc cccaggatag gtgggacaga gaagctcagt
     1381 tctgggacgg tggcatcctc tctctccttt cctttctttt tcctttacca acctctggca
     1441 ctgagactca tgggaatggg acactgccaa catcttaatt tgttattaag ctttatggca
     1501 cggaagccac cgttcccctc acaacagagg cagtatgtgt gttgccacac tgagaagccc
     1561 tgagagccgt ggcattacct gctactggac cacctcctgc cctcacgtca taaaactacc
     1621 tgccacctca tgcatacata tgtgcacatg cacatacagc cacatacatg cctagatagc
     1681 catgccttca aactcctggt tctttctttg atgaaaaagg accaaaaccc ctgtgttgag
     1741 ctcccctggt atagataaga gggtctcttc tcactccttt cactggccag ttctgattcc
     1801 caggagaaag aaggggacag attaaattca cttcccctcc aggagacgct gagaggccca
     1861 atgcccacat ggaaaccccc ttcagtgatg accactgtta ctcgtaagtg tctgtatgtc
     1921 cctcaggcgt gccgtagtgg gagaacagtt caaagccatc ccaaagagtt tgtgtttaaa
     1981 ttctgagtcc tcgtgataga gaaggaaact agcttgtgca tttctgcctg gagaaagtgg
     2041 agacagtctc tcccagagtc ccaggattct aggaactttt caaccagctc gcaacttcac
     2101 aagtccttag cagaacagga aagccaaggt gagacacctg tcctatttgt caagtggtat
     2161 cacatggtcc gaagctctag ggacccatga ggaacagatc cactggcagg aatggctctg
     2221 tgtgagatgc tgtagcctag gtggcggcct tggaggccaa tgaggatgca gagaagaaaa
     2281 gcaagctggg tcttccctgc ttttcagccc aacgcaaccc cagacataga aatatggcat
     2341 tacatggagg gcaagtcagc ctctcacaga gctcagagga gctctgcaga atgcctgcgc
     2401 agttgtgctt tttcagaagg gacaacaaag gcttgagaag atttgtacct caactgtcaa
     2461 gaagtcagcg tcagaagggg gacagtgtgt tcttctcctg ttgccccggt tgagttgctg
     2521 cttctccctg ctgctcacgc caagtcttcc cctctgtgct aggagatgga gctagcctga
     2581 gaggaccttg tggacactcg gagagtgcca tgagtgtaac aagcttgccc tacaagcttt
     2641 gctccacccc atccacccag ttctgaagct ctcaagtcag tccatggcgt gggtcagccc
     2701 taagacctag ggccccaggt tctggatctc tatactgtca accacatgac ttagggatgg
     2761 ccagttctga caactagccc ttcaagagag aactgaggca agtcacgcag aaagaggctc
     2821 gaactgtctg catggctgaa aacacgtgtg ctaaagtgga tggttacgag agctcggtgc
     2881 cgagaggctc agatgccatg ggcatctcca gacaagcctt gctaagagcc ctgcatgctc
     2941 tccttctatg ggacctgcct gacctagaaa cagggtggta tatggctaga gtcagaatgt
     3001 atggactgaa acggagcaga cgggatacat gcgggtttgt ttttgaaacc tatggcttta
     3061 aaaaactatt acttaaaagc tgggcgcagt ggtgcatacc cttaatccca gcacttgagg
     3121 gacagaggca ggtggatctc tgtgagttga aggccagact agtctgaata gcaagttcta
     3181 ggccagccag gattacacaa gtaagactta gtctcaaaga caacagtgaa aacgactcgg
     3241 ccgtgttccc aggactgatc agtgaggtgg cccgttattg aatcgagttg aagacaaagc
     3301 acaaacttgc tgggttcaag gactgcatct gtagcagcca gccctggggt tttccattga
     3361 gaagattaaa gcatgttaaa ttca
//
