LOCUS       NM_001399559            1912 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus PHD finger protein 23 (Phf23), transcript variant
            1, mRNA.
ACCESSION   NM_001399559 XM_006246747
VERSION     NM_001399559.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1912)
  AUTHORS   Wang,Z., Hu,J., Li,G., Qu,L., He,Q., Lou,Y., Song,Q., Ma,D. and
            Chen,Y.
  TITLE     PHF23 (plant homeodomain finger protein 23) negatively regulates
            cell autophagy by promoting ubiquitination and degradation of E3
            ligase LRSAM1
  JOURNAL   Autophagy 10 (12), 2158-2170 (2014)
   PUBMED   25484098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jan 12, 2022 this sequence version replaced XM_006246747.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.61581.1,
                                           SRR26643295.39007.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-205               JAXUCZ010000010.1  55217351-55217555
            206-237             JAXUCZ010000010.1  55219106-55219137
            238-330             JAXUCZ010000010.1  55219248-55219340
            331-1162            JAXUCZ010000010.1  55219782-55220613
            1163-1912           JAXUCZ010000010.1  55220722-55221471
FEATURES             Location/Qualifiers
     source          1..1912
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1912
                     /gene="Phf23"
                     /note="PHD finger protein 23"
                     /db_xref="GeneID:360550"
                     /db_xref="RGD:1302969"
     exon            1..205
                     /gene="Phf23"
                     /inference="alignment:Splign:2.1.0"
     CDS             172..1377
                     /gene="Phf23"
                     /note="isoform 1 is encoded by transcript variant 1; PHD
                     zinc finger containing protein JUNE1; PDH-containing
                     protein JUNE-1"
                     /codon_start=1
                     /product="PHD finger protein 23 isoform 1"
                     /protein_id="NP_001386488.1"
                     /db_xref="GeneID:360550"
                     /db_xref="RGD:1302969"
                     /translation="MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAY
                     AGYIPPSKGESDWPASGSSSPLRGESAADSDGWDSAPSDLRTIQTFVKKAKSSKRRAA
                     QAGPTQPGPPRSTFSRLQAPDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTSRPPA
                     ALTPVPLSQGDLSQPRKKDRKNRKLGPGGGAGFGVLRRPRPAPGDGEKRSRIKKSKKR
                     KLKKADRGDRLPPPGPPRAPPSDTDSEEEEEEEEEEDDEEETTVVGGGGVPAPVLPTP
                     PEAPRPPVTVHPEGAPPTDSEGKDAGSTETSQDGDGSSSEGEMRVMDEDIMVESGDDS
                     WDLITCYCRKPFAGRPMIECSLCGTWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRL
                     GGLPKSGEP"
     exon            206..237
                     /gene="Phf23"
                     /inference="alignment:Splign:2.1.0"
     exon            238..330
                     /gene="Phf23"
                     /inference="alignment:Splign:2.1.0"
     exon            331..1162
                     /gene="Phf23"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1912
                     /gene="Phf23"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtgcgggag gcagtggtag agggaggagg cggtagcgga ctggagtctc aaccgcgcca
       61 aggcggacac ttcggtggag cgaggcagta gaaacacgga gcacccaagg cagcaccggg
      121 aatcccggct tagaggaggg ggtcgccgga ccgagtgaag gggagggggc gatgctggaa
      181 gccatggcgg agcccagtcc cgaagatccg cctccgactc ttaagcccga gactcagcca
      241 ccggagaagc ggcggagaac aattgaggat ttcaacaaat tctgcagttt tgtcttggcc
      301 tatgctggtt acatcccccc tagcaaaggg gaaagcgatt ggccagcttc tggctctagc
      361 tctccattac gaggtgagag tgcagcagac agtgatggct gggactcagc cccgtcggac
      421 cttcgaacta tccagacttt tgttaagaaa gcaaaatcat caaagagaag ggcagctcaa
      481 gcaggtccta cccagccagg acccccaagg tccacttttt ctcgtctgca ggcccctgat
      541 agtgctactc tgcttgagaa gatgaagctc aaggactctc tgtttgatct ggatgggccc
      601 aaagtggcat ctccactgtc tcccacatcg ttgacctccc ggcctcctgc tgctctcacc
      661 ccagtgccac tgtcccaggg ggacctctcc cagcctcgaa agaaggaccg aaagaataga
      721 aagttgggac caggaggtgg ggctggcttt ggggtgcttc ggagacctcg gccagctcct
      781 ggggatgggg aaaaacggtc tcgaatcaag aagagcaaga agcggaagtt gaaaaaggcc
      841 gaccgggggg atagactccc acctcctggc cctcctaggg ctcctcccag tgatacagac
      901 tctgaagagg aggaggaaga ggaagaagag gaagacgatg aggaagagac gacagtggtg
      961 ggtggtggtg gagttccagc ccctgtgctc ccaacacccc ctgaagcccc caggccccct
     1021 gttacagtgc accctgaagg ggctccccct actgacagtg aaggcaaaga tgcgggcagc
     1081 acagaaacaa gccaagatgg agatggcagc tccagtgaag gagagatgcg ggtcatggat
     1141 gaggacatca tggtagaatc aggtgatgac tcatgggatc tgatcacatg ttactgcaga
     1201 aagccctttg ctgggcggcc catgatcgag tgcagcctct gtgggacatg gatccacctc
     1261 tcctgtgcta agattaagaa gaccaatgtt cctgacttct tttattgcca gaaatgcaag
     1321 gaacttcggc cagaggcccg gcggttaggg ggtcttccca aatctggaga accctgacgt
     1381 cactgtttaa ggctggaact tctgacatgg gaactgagcc tcagtctcca gccttccctt
     1441 ggattgagga aggtgtcccc acttgagggc cagaattccc aagggagagg tgtcctacct
     1501 gctccgtgga cttgaaattg acccattaca attgggttag gggaggctgg atctgtagac
     1561 aaaaatctct gtccagtgaa ccctccaccc ttttcacttt cagggccagg gctcaaactg
     1621 ggctgtaatg ggatagttgt ctatgaaact gtagtgtaaa tacagcactc ccttcctcac
     1681 atttcttctt tcttccattt actttcttct acaccggatg tatttttaat tttgggctcc
     1741 cccatttgag cgaggttgct caaaggtgga gaaccaaagc ctggtggagt gaggaaggaa
     1801 agcaaaaaag gtgtcaatta tcactcgcct tgtttttaat aatatcggct ggctgcttgt
     1861 acagacggcc tacgtgttgt aaataaagca gagtgggctc ttgtgtttta ca
//
