LOCUS       NM_001004272            1711 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus PHD finger protein 23 (Phf23), transcript variant
            2, mRNA.
ACCESSION   NM_001004272 XM_340829
VERSION     NM_001004272.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Wang,Z., Hu,J., Li,G., Qu,L., He,Q., Lou,Y., Song,Q., Ma,D. and
            Chen,Y.
  TITLE     PHF23 (plant homeodomain finger protein 23) negatively regulates
            cell autophagy by promoting ubiquitination and degradation of E3
            ligase LRSAM1
  JOURNAL   Autophagy 10 (12), 2158-2170 (2014)
   PUBMED   25484098
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Jan 12, 2022 this sequence version replaced NM_001004272.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079162.1, SRR26643292.41379.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-205               JAXUCZ010000010.1  55217351-55217555
            206-237             JAXUCZ010000010.1  55219106-55219137
            238-330             JAXUCZ010000010.1  55219248-55219340
            331-961             JAXUCZ010000010.1  55219983-55220613
            962-1711            JAXUCZ010000010.1  55220722-55221471
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q24"
     gene            1..1711
                     /gene="Phf23"
                     /note="PHD finger protein 23"
                     /db_xref="GeneID:360550"
                     /db_xref="RGD:1302969"
     exon            1..205
                     /gene="Phf23"
                     /inference="alignment:Splign:2.1.0"
     CDS             172..1176
                     /gene="Phf23"
                     /note="isoform 2 is encoded by transcript variant 2; PHD
                     zinc finger containing protein JUNE1; PDH-containing
                     protein JUNE-1"
                     /codon_start=1
                     /product="PHD finger protein 23 isoform 2"
                     /protein_id="NP_001004272.1"
                     /db_xref="GeneID:360550"
                     /db_xref="RGD:1302969"
                     /translation="MLEAMAEPSPEDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAY
                     AGYIPPSKGAPDSATLLEKMKLKDSLFDLDGPKVASPLSPTSLTSRPPAALTPVPLSQ
                     GDLSQPRKKDRKNRKLGPGGGAGFGVLRRPRPAPGDGEKRSRIKKSKKRKLKKADRGD
                     RLPPPGPPRAPPSDTDSEEEEEEEEEEDDEEETTVVGGGGVPAPVLPTPPEAPRPPVT
                     VHPEGAPPTDSEGKDAGSTETSQDGDGSSSEGEMRVMDEDIMVESGDDSWDLITCYCR
                     KPFAGRPMIECSLCGTWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGLPKSGEP
                     "
     exon            206..237
                     /gene="Phf23"
                     /inference="alignment:Splign:2.1.0"
     exon            238..330
                     /gene="Phf23"
                     /inference="alignment:Splign:2.1.0"
     exon            331..961
                     /gene="Phf23"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1711
                     /gene="Phf23"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtgcgggag gcagtggtag agggaggagg cggtagcgga ctggagtctc aaccgcgcca
       61 aggcggacac ttcggtggag cgaggcagta gaaacacgga gcacccaagg cagcaccggg
      121 aatcccggct tagaggaggg ggtcgccgga ccgagtgaag gggagggggc gatgctggaa
      181 gccatggcgg agcccagtcc cgaagatccg cctccgactc ttaagcccga gactcagcca
      241 ccggagaagc ggcggagaac aattgaggat ttcaacaaat tctgcagttt tgtcttggcc
      301 tatgctggtt acatcccccc tagcaaaggg gcccctgata gtgctactct gcttgagaag
      361 atgaagctca aggactctct gtttgatctg gatgggccca aagtggcatc tccactgtct
      421 cccacatcgt tgacctcccg gcctcctgct gctctcaccc cagtgccact gtcccagggg
      481 gacctctccc agcctcgaaa gaaggaccga aagaatagaa agttgggacc aggaggtggg
      541 gctggctttg gggtgcttcg gagacctcgg ccagctcctg gggatgggga aaaacggtct
      601 cgaatcaaga agagcaagaa gcggaagttg aaaaaggccg accgggggga tagactccca
      661 cctcctggcc ctcctagggc tcctcccagt gatacagact ctgaagagga ggaggaagag
      721 gaagaagagg aagacgatga ggaagagacg acagtggtgg gtggtggtgg agttccagcc
      781 cctgtgctcc caacaccccc tgaagccccc aggccccctg ttacagtgca ccctgaaggg
      841 gctcccccta ctgacagtga aggcaaagat gcgggcagca cagaaacaag ccaagatgga
      901 gatggcagct ccagtgaagg agagatgcgg gtcatggatg aggacatcat ggtagaatca
      961 ggtgatgact catgggatct gatcacatgt tactgcagaa agccctttgc tgggcggccc
     1021 atgatcgagt gcagcctctg tgggacatgg atccacctct cctgtgctaa gattaagaag
     1081 accaatgttc ctgacttctt ttattgccag aaatgcaagg aacttcggcc agaggcccgg
     1141 cggttagggg gtcttcccaa atctggagaa ccctgacgtc actgtttaag gctggaactt
     1201 ctgacatggg aactgagcct cagtctccag ccttcccttg gattgaggaa ggtgtcccca
     1261 cttgagggcc agaattccca agggagaggt gtcctacctg ctccgtggac ttgaaattga
     1321 cccattacaa ttgggttagg ggaggctgga tctgtagaca aaaatctctg tccagtgaac
     1381 cctccaccct tttcactttc agggccaggg ctcaaactgg gctgtaatgg gatagttgtc
     1441 tatgaaactg tagtgtaaat acagcactcc cttcctcaca tttcttcttt cttccattta
     1501 ctttcttcta caccggatgt atttttaatt ttgggctccc ccatttgagc gaggttgctc
     1561 aaaggtggag aaccaaagcc tggtggagtg aggaaggaaa gcaaaaaagg tgtcaattat
     1621 cactcgcctt gtttttaata atatcggctg gctgcttgta cagacggcct acgtgttgta
     1681 aataaagcag agtgggctct tgtgttttac a
//
