LOCUS       NM_001130680            2022 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus PHD finger protein 21B (Phf21b), mRNA.
ACCESSION   NM_001130680 XM_001078174 XM_235545
VERSION     NM_001130680.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473950.2.
            
            On or before Jul 30, 2008 this sequence version replaced
            XM_001078174.1, XM_235545.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q34"
     gene            1..2022
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /note="PHD finger protein 21B"
                     /db_xref="GeneID:300117"
                     /db_xref="RGD:1308739"
     exon            1..464
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     CDS             411..1895
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /codon_start=1
                     /product="PHD finger protein 21B"
                     /protein_id="NP_001124152.1"
                     /db_xref="GeneID:300117"
                     /db_xref="RGD:1308739"
                     /translation="MELQSRSEALAVELARHQNGDLKKQLHERQPRIAALSDKQALGS
                     STAVPVTGPQVSSLQRLAGQGAAVLPQVRPKTLIPDSLPVTPGRDRPPKQPPTFQKAT
                     VVSIKNPSPALPTANNTVNHVPTPSSQTQALTEPTAITSPLSSAGVAYAIISTSPSNA
                     ATITPSTTVPVASDGIKVQPLLISADKKVIIIQPQVKTQPESSAEPEPPTEEPSQGAQ
                     DTKEDQPPSKENPEKIAFMVALGLVTTEHLEEIQSKRQERKRRSTANPAYSGFLETER
                     KRLASSYLHNPLFLTARANEDPCWKGEITHDEFCAACKRGASLQPCGTCSGAYHLSCL
                     DPPLKTAPKGVWVCPKCQRKALKKDEGVPWTGMLAIVHSYVTHKTVKEEEKQKLLQRG
                     SELQSEHQQLEERDRQLASAVKKCLELKTSLLARQRGTQSSLDRIRALLRLIQGEQML
                     QVAVATTSPTPLLAGAWTKPSTTTTTTTTTTTMRTSLQHPQNHN"
     exon            465..530
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            531..623
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            624..974
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            975..1106
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1158
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            1159..1235
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            1236..1290
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            1291..1313
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            1314..1472
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            1473..1548
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..1652
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
     exon            1653..2022
                     /gene="Phf21b"
                     /gene_synonym="RGD1308739"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgccgaatt agcatcgtgc cgaggcacaa ctttaccgcg gccccagcga gatccaggcg
       61 cgcgcgccgg aggaaatata gtccctgccg gcggtcagct ggcgcgggcg gcgccagggc
      121 gcgcgctggg gggctgcgcg gggctcccgg cgccgggggg ccatgcgccg ggcggcgcag
      181 gcagcccggg cacccggcgc aacttagcgg cagccggaag agttgggcgc cagctcgcct
      241 ttcttccctc tcgtcagcct cctttcctat cggcgctgca ggaggggact cgtgtctctc
      301 agtgcccggg acgccggatc cgagttctcc cggtctggtt cccgccgagc cgcacaactt
      361 cctgcgagct ccggccaaag tgagctcaaa gtgctgccca agttgcggcg atggagctgc
      421 aaagccggtc cgaggcgctc gcagtggaac tcgcgcgcca ccagaacggc gacctcaaga
      481 agcagctcca cgaaaggcag ccacggatcg cagcgctcag cgacaaacaa gctttgggat
      541 cctccactgc agtgcctgtc acaggtcctc aggtcagctc cctgcagagg ttggccgggc
      601 aaggagcagc agtgctacct caggttaggc caaagactct gattccagac agcctccctg
      661 tcaccccggg cagggaccgg ccacccaagc aacccccaac attccaaaag gccactgtgg
      721 tcagcatcaa gaaccccagc ccagccctcc ccactgccaa caacaccgtc aaccatgtgc
      781 caacacccag cagccagacc caggccctca ccgagcccac cgccatcacc tcacccctga
      841 gcagtgccgg ggtggcctat gccatcatct ccacctcccc cagcaatgct gccaccatca
      901 cccccagtac caccgtgccc gtggccagcg acggcatcaa agtgcagccc ctcctcatca
      961 gtgctgacaa aaaggtcatc atcattcagc cccaagtgaa gacacagcca gagagttcag
     1021 cagagcccga gccacccacg gaggagccat ctcagggagc tcaggacacc aaggaagatc
     1081 agccccccag caaggagaat cctgagaaaa tcgccttcat ggtagctcta ggcctggtca
     1141 caacagaaca tctagaagag atccagagca agcggcagga gaggaagagg aggagcacgg
     1201 ccaaccctgc ctatagcggc ttcttggaga ccgagaggaa gcgactggcc tccagttatc
     1261 tccacaaccc cttgttcctc acagcacgag ccaatgagga cccctgctgg aagggtgaaa
     1321 tcacccatga tgaattctgt gctgcctgca agcgaggagc cagcctgcag ccctgcggca
     1381 cctgttcagg ggcctaccac ctcagctgcc tggacccgcc ccttaagacg gcacccaagg
     1441 gcgtgtgggt ctgccccaag tgccagcgga aggccttaaa gaaagacgag ggtgtgccct
     1501 ggactggaat gctggccatt gtacactcct atgtcaccca caagacagtg aaagaagagg
     1561 agaagcagaa gctgttgcag cgtggcagcg aactgcagtc tgaacaccag cagctggagg
     1621 agcgggaccg gcagctggcc tcagctgtga agaaatgctt ggagctgaag acaagcctgt
     1681 tggcccgcca acggggtaca cagtcatcgc tggaccgcat ccgagccctc ctcagactga
     1741 tccagggtga gcagatgctt caggtcgctg tggcaaccac cagccccacc ccgcttctgg
     1801 cgggggcctg gaccaagcct tccaccacca ccaccaccac caccaccacc accaccatgc
     1861 gcacttccct ccagcacccc cagaaccaca actgacccca gggacctgta taacactcat
     1921 ggaaagttac tgggaccttg ctctcaagac ctggaggatc tgtcggcctt aattcataaa
     1981 ctctatgaat tttagacaaa aataaattag acagagtgat ga
//
