LOCUS       XM_039106451            5417 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PHD finger protein 21A (Phf21a), mRNA.
ACCESSION   XM_039106451
VERSION     XM_039106451.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106451.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2230              JACYVU010000118.1  2025825-2028054
            2231-2585           JACYVU010000118.1  2028499-2028853
            2586-2626           JACYVU010000118.1  2054407-2054447
            2627-2738           JACYVU010000118.1  2055818-2055929
            2739-2882           JACYVU010000118.1  2061616-2061759
            2883-2915           JACYVU010000118.1  2067960-2067992
            2916-2981           JACYVU010000118.1  2070205-2070270
            2982-3231           JACYVU010000118.1  2158354-2158603
            3232-3454           JACYVU010000118.1  2167259-2167481
            3455-3484           JACYVU010000118.1  2167483-2167512
            3485-3574           JACYVU010000118.1  2168635-2168724
            3575-3868           JACYVU010000118.1  2170218-2170511
            3869-3967           JACYVU010000118.1  2183784-2183882
            3968-4019           JACYVU010000118.1  2186107-2186158
            4020-4099           JACYVU010000118.1  2186829-2186908
            4100-4160           JACYVU010000118.1  2187330-2187390
            4161-4324           JACYVU010000118.1  2189683-2189846
            4325-4480           JACYVU010000118.1  2195077-2195232
            4481-4556           JACYVU010000118.1  2196882-2196957
            4557-4660           JACYVU010000118.1  2197176-2197279
            4661-5417           JACYVU010000118.1  2198212-2198968
FEATURES             Location/Qualifiers
     source          1..5417
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5417
                     /gene="Phf21a"
                     /note="PHD finger protein 21A; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: deleted 1
                     base in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 27 ESTs, 2 long SRA
                     reads, 1 Protein, and 99% coverage of the annotated
                     genomic feature by RNAseq alignments, including 54 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:362166"
                     /db_xref="RGD:1560612"
     CDS             3254..4915
                     /gene="Phf21a"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: PHD finger protein 21A"
                     /protein_id="XP_038962379.1"
                     /db_xref="GeneID:362166"
                     /db_xref="RGD:1560612"
                     /translation="MITTKTLPLVLKAATATMPASVVGQRPTIAMVTAINSQKAVLST
                     DVQNTPVNLQTSSKVTGPGAEAVQIVAKNTVTLQVQATPPQPIKVPQFIPPPRLTPRP
                     NFLPQVRPKPVAQNNIPIAPAPPPMLAAPQLIQRPVMLTKFTPTTLPTSQNSIHPVRV
                     VNGQTATIAKTFPMAQLTSIVIATPGTRLAGPQTVQLSKPSLEKQTVKSHTEAEEKQA
                     ESRTVTPPAAPKPKREENPQKLAFMVSLGLVTHDHLEEIQSKRQERKRRTTANPVYSG
                     AVFEPERKKSAVTYLNSTMHPGTRKRGRPPKYNAVLGFGALTPTSPPSSHPDSPENEK
                     TETTFTFPAPVQPVSLPSPTSTDGDIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLEPP
                     LKTIPKGMWICPRCQDQMLKKEEAIPWPGTLAIVHSYIAYKAAKEEEKQKLLKWSSDL
                     KQEREELEQKVKELSSSISKCMEMKNTILARQKEMRSSLDKVKQLIRLIHGIDLSKPV
                     DSEATVGALSNGPDCTPPANAASTPAPSPSSQSCTANCNQGEETK"
ORIGIN      
        1 tctcttttcc tcactctctc tttttttttt cttgagtagc tctatttccc ctccctcccc
       61 cttcccccct ccctctctcc ctctgtcttg tctctggtgt ttgtctctgg gaaggagcag
      121 gggctgcttg cttggagttt gttgtggggg gaggtagggg gaggggaggg gtgtgtggga
      181 gggaggaggg aaagggggtg ttcttgtcag gacccctcag tcaacttgag atttcagcaa
      241 taacttcccc ttcggggcgc ccccctgcgt gcccttttcc tattcctctc cctccccagg
      301 aaaaaaaaaa gacaatggga atacctcgtc tccccccttc ctcccctctg ccctccaccc
      361 ctccctagga tagattggaa gtaagtttat gagcagcctc gggagcctgg gcgctgagta
      421 cagggccaga gcgggtgaca ggggcggcgc gtcgggggtg gcggcgaggg ggcgacacag
      481 agtccctgtg gggtatcggg ctggggggcc gcgggggcgg ggggcgagtg cctgcggccg
      541 gggggatggc cgcctgggcc ccttccccac ccccacaccc tgggatgctg tcggggggaa
      601 gttttcatta tggttattta atttaaaaaa aatttttttt ttttgggaaa accatcttgt
      661 ttggtgactg agagatctgg tttaaaaaaa aaaaaaagct gcggctgctg acgctgccgg
      721 gcccgagtgt gtgtgagtga gtgtgtgttg gtgcatttgt cttgggtggc cggagcagcg
      781 ttggggaaat tccgcttatt cttcttcttc tgcaacttgt tattctgagg agtccgcctg
      841 cacccctcac cccggggcgg ccctcccgcc gtcgccgccg gccggccgcc ccgggacccc
      901 gcgcgggtcc gggactcaca ggcccctcag agaggggccg cggccgcccc tccccccggg
      961 ccgcgggggg aggggcgcgc ggagtgggac tctttccgtt tggtccagcc ccgcggtgca
     1021 cgcagttccc aacacttctc gtcatcctct ctctctgctc tctttattct gctgagcggt
     1081 gctgttagga tttcttctct ctctctctct ctctctctct ctctctctct ctctctctct
     1141 ctctctctct ctctcctacc tcctcttcct cccttgacca cgctcgcaat ggtgggtagc
     1201 tgcaaggtgg ccctggcagg ggaggggttt catgtggaca ctggggcacc gggcgagaga
     1261 ggtctccttt caactttgtc ttgtggcttg caccccggga ggaggccaca tgccgattgt
     1321 ggggtgtaga tttgccggga gtgatttcta agtagttgag ttgttgagat gagggtacga
     1381 cggctagtgg taggcaggtt ttgttttcgt gggtgaatcg ggtgtcatca tattccggtc
     1441 atatgttgaa atattctttg tttaggtctt gaagtagagg atctccctct gcacgtccac
     1501 attgtgttgt ttttaaatga tgtctccggg agtatggatt tctagaatca caaatgtgat
     1561 tttaagatct cggcatgtgt gggcctcagc actggccttg acagtgaact ttatggctgt
     1621 gtttttggac ttctaagatt ttatcccata tgtgggatgc tagttatgct ttttcttaat
     1681 ggtagctaat caggaatgtc gagtcttgag ctggggaagt tagagaggga agggcattta
     1741 tttattaata attgataact gaatgttaga atcagattca tttggtctgg ttggaggttt
     1801 ttggttgttt tttttttttt tttttttttt ttttttcctc ccttttttct ttaaagctgc
     1861 cctgcactct aggaagcctt ttggcaggcc ttctttatgg tggttctttg gggcacggag
     1921 ggggtgggta tcacctttta gagagatcta cagtatcatc tgtagcttta ttgaaggcct
     1981 gttcaggagg ctgatactga ggccaagaag tgtagagcta cttttcagaa aagtatttat
     2041 gttactttgt ttacatttca tgtttcttca aatttgggca gtagaaataa ataggtcagc
     2101 gttcctattg gtttttgaag gttagcgccc cccctccccc ctcaaagttt tgccatctac
     2161 ttggtttaca gccttgtagg gaagcattac tgatttttct ctgggagtac tgttacttat
     2221 tttaatttcg cctcccaaag gtttgggacg caggcaaatc cttatggagc tggaagaatg
     2281 ataaacacat tgtgaagaca cctgcccggg ccatactttg ttttaaaggg ataaaagtga
     2341 tggatgggac accgtttcct ttgatttttc aatggcccac cctttttcct gttcaattat
     2401 ctggaaggag ctgcttcaga aacactcttc tgtttacaag aagatctcta gcactatcca
     2461 gcaggaggtg ctacagcaag ttaaagggga gctcttaatt ttgagggtct tattgaagtt
     2521 ctcttcttat tgaagttctc ttagctcagc taagcaacag gagtaacgtt ccaggaagat
     2581 tttgagggac tagaaagcag aaggagagcc agcttctcca gaattggact tctcagaacc
     2641 tttaatatgc taatgtgcat tgtgaatctc caagatgggg atatgatatg cagcattctt
     2701 gaatacttct aatgacaggg agcccactac ctcataagct gcagcaacaa gaggagctgg
     2761 taattttaaa cggaggctga agacattgta gaattagcag acataagaga gcgtggagaa
     2821 ggcagaggat ggagttgcag actctacagg aggctcttaa agtggaaatt caggttcacc
     2881 agaaactggt tgctcaaatg aagcaggatc cgcagaatgc tgacttaaag aaacagcttc
     2941 atgaactcca agccaaaatc acagctttga gtgagaaaca gaaaagagta gttgagacag
     3001 ctgcggcaga acctgatagt caagcaagag cagccggaca agttccagat acagccattg
     3061 tcacagtctg aaaacaaact acaaacagca cagcagcagc cactacagcc actgcagcag
     3121 cagcaacagc aacagcagca acagcagcag cagcagcagc agcagcagca gcagcagcag
     3181 caacagcacg cccagcagtc agcagccccg cctagtctga ctgcatcaca gaagactgta
     3241 aactacagct tctatgatta ccacaaagac actacctctc gtcttgaaag cagcaactgc
     3301 gaccatgcct gcctctgttg tgggccagag acctaccatt gctatggtga ccgccatcaa
     3361 cagccagaag gctgtgctca gcactgatgt gcagaacaca ccagtcaacc tccagacgtc
     3421 tagtaaggtc actgggcctg gggcagaggc tgttcaaatt gtggcaaaaa acacagtcac
     3481 tctgcaggtt caagcaacac ctcctcagcc catcaaagta ccacagttta tccctcctcc
     3541 tagactcact ccacgtccaa actttcttcc acaggttcga cccaagcctg tggcccagaa
     3601 taacattcct atcgctccag cgcctcctcc catgcttgca gctcctcagc ttatccagag
     3661 gcctgtcatg ctgaccaagt ttacacccac aaccctcccc acatcccaga attccatcca
     3721 ccctgtccgt gttgtcaatg gacagactgc aaccatagcc aaaacgttcc ccatggccca
     3781 gctcaccagc attgtcatag cgactccagg gaccagactc gctggacctc agactgtaca
     3841 gcttagcaaa ccaagcctgg agaaacagac agttaaatcc cacacagaag cagaggagaa
     3901 acaagcagag agccggactg tcaccccacc tgctgcacca aaaccaaaac gagaagagaa
     3961 ccctcagaaa cttgccttca tggtatctct agggttggta acacatgacc atctagaaga
     4021 aatccaaagc aagaggcagg agcgaaagag aagaacaaca gcaaacccgg tgtacagtgg
     4081 ggcagtcttt gagccagagc gtaagaagag tgcagtcact taccttaaca gcacaatgca
     4141 tcctgggacg cggaagagag gtcgtcctcc aaaatacaat gcagtgctgg ggtttggagc
     4201 ccttacccca acatcccccc catccagtca tcccgactcc cctgaaaatg aaaagacaga
     4261 gaccacattc actttccctg cacctgttca gcctgtgtcc ttgcccagcc ccacctccac
     4321 agacggtgat atccatgagg atttttgcag tgtttgcaga aagagcggcc agttgctgat
     4381 gtgtgacaca tgttcccgtg tgtatcatct ggactgctta gagccgcccc tgaaaacaat
     4441 tcccaagggc atgtggatct gtcccagatg tcaggaccag atgctgaaga aggaagaagc
     4501 aatcccatgg ccggggacct tagccattgt tcattcctac atcgcctaca aagcagcaaa
     4561 agaagaggag aaacagaagc tacttaagtg gagttcagat ttaaagcagg agcgggaaga
     4621 actggagcag aaggtgaaag agctcagcag ttctataagt aaatgcatgg agatgaagaa
     4681 caccatccta gcacggcaga aggagatgcg cagctccctg gacaaggtga aacagctcat
     4741 ccgcctcatc catggcatcg acctctccaa acctgtagac tctgaggcca cggtgggggc
     4801 cctctccaat ggcccagact gcactccccc tgccaacgcc gcctccacac ccgccccttc
     4861 cccctcctca cagagctgta cagcgaactg taaccagggg gaagagacta aataacagcc
     4921 cccgaggaga cgccacggtc ctggtggcga ggagactcta gaagagcaaa gccggatttc
     4981 ttctggaaag tacagagttc ttttggttct ttggttccag agagagagaa gatgcttgtg
     5041 ccaggtggca ccgagttgcc aattgattct tgttattctg tgtgtacatg caaagactgg
     5101 accatgttac atgaaacagt gccagctgga ggttctttgc cagcaccatg ccaagtgaca
     5161 taatatatta ctctctctat tatacaccag tgtgtgcctg cagcagcctc cacagccacg
     5221 gtgggttcct ttctgttttg ttgggtgggg agcagggacg ggcagaggga ggagagcagg
     5281 tttcagatcc ttactgggag ccatttgttt aggtagaaaa gacaagtcca aagagtgtgt
     5341 gggctttcct gttcctaaac ttttcactac cataaaacca aaaaacaaaa aaaaaaaaaa
     5401 gaaaaaagaa aaaaaaa
//
