LOCUS       NM_001271439            6648 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus PHD finger protein 20-like 1 (Phf20l1), mRNA.
ACCESSION   NM_001271439 XM_003754309
VERSION     NM_001271439.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6648)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 6648)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Sep 25, 2012 this sequence version replaced XM_003754309.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760383,
                              SAMEA5760386 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-281               JAXUCZ010000007.1  100219639-100219919
            282-401             JAXUCZ010000007.1  100221895-100222014
            402-573             JAXUCZ010000007.1  100234315-100234486
            574-658             JAXUCZ010000007.1  100234628-100234712
            659-747             JAXUCZ010000007.1  100237986-100238074
            748-825             JAXUCZ010000007.1  100238306-100238383
            826-1039            JAXUCZ010000007.1  100242603-100242816
            1040-1165           JAXUCZ010000007.1  100243349-100243474
            1166-1248           JAXUCZ010000007.1  100248467-100248549
            1249-1498           JAXUCZ010000007.1  100251932-100252181
            1499-1687           JAXUCZ010000007.1  100254168-100254356
            1688-1897           JAXUCZ010000007.1  100254589-100254798
            1898-1954           JAXUCZ010000007.1  100262307-100262363
            1955-2062           JAXUCZ010000007.1  100263545-100263652
            2063-2227           JAXUCZ010000007.1  100268493-100268657
            2228-2409           JAXUCZ010000007.1  100270976-100271157
            2410-2509           JAXUCZ010000007.1  100272072-100272171
            2510-2705           JAXUCZ010000007.1  100273902-100274097
            2706-3060           JAXUCZ010000007.1  100278733-100279087
            3061-3223           JAXUCZ010000007.1  100280245-100280407
            3224-6648           JAXUCZ010000007.1  100282156-100285580
FEATURES             Location/Qualifiers
     source          1..6648
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q33"
     gene            1..6648
                     /gene="Phf20l1"
                     /note="PHD finger protein 20-like 1"
                     /db_xref="GeneID:314964"
                     /db_xref="RGD:1560141"
     exon            1..281
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            282..401
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     CDS             319..3366
                     /gene="Phf20l1"
                     /note="tudor domain-containing protein PHF20L1"
                     /codon_start=1
                     /product="PHD finger protein 20-like protein 1"
                     /protein_id="NP_001258368.1"
                     /db_xref="GeneID:314964"
                     /db_xref="RGD:1560141"
                     /translation="MSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEEGKML
                     VHFERWSHRYDEWIYWDSNRLRPLERPSLRKEGLKDEEDLFDFKAGEEVLARWTDCRY
                     YPAKIEAINKEGTFTVQFYDGVIRCLKRMHIKAMPEDAKGQVKSQHPLSWCCPIDPAG
                     SCNQSMGSEDWIALVKAAAAAAAKNKTGSKPRTSANSNKEKERDGGKWFKVPSKKAET
                     STCIVTAEIEKKEELPTSSEPFGLHIDSVPKIVFPQPESTLTNKRKNNQGNSFQAKRA
                     RLNKITGLLASKAVGVDGAEKKEDCSATAPVLEQAISPKPQSQKKNEAVISSSANTQK
                     PALLSSTLSSGKARSKKCKHESGESSGCIKAPKSPLAPELIQAKDLTLVSQLSSVINK
                     TSSPQPVNPPRPCKHSERRRRSQRLATLPMPDDSLEKLSSSSSATDGKVFSISSQNQQ
                     ESSVPEVPAIAYVPLQKLGPCLPLDLSCGSEVTGSQAPDSSYPGGECPREEKEETPLF
                     ANPTSKVVSDVKGAAAATGILKTEKKVKLEEKTSTAFGKRKEKDKERKEKRDKDHYKP
                     KQKKKKKKKKKSKQHDYSDYEDSSLDFLERCSSPLTRSSGSSLAPRSTFTEKTTTYQY
                     PRAILSVDLSGENLSDVEFLDDSSTESLLLSGDEYNQDFDSTNFEESQDEDDALNEIV
                     RCICELDEENGFMIQCEECLCWQHSVCMGLLEDSIPEQYICYICRDPPGQRWNAKYRY
                     DKEWLNNGRMYGLSFVKENYSHLNAKKIVSTHHLLADVYGITEVLHGLQLKIGILKNK
                     HHPDLRLWAYSGKRKDQDQVVAGAERKVILQDTANSEGRKYVQNHKEPPLKMEETYIT
                     SEHSYQKPQSFSQDCHSLTDPGSSDDDDVSSFEEDGELHVADNSHLLYSVKERGVSEK
                     NPASENKVFVYNDKKGMEGPGDAHLQWQLNLLTHIENVQNEVTSRMDLIEKEVDVLES
                     WLDFTGELEPPDPLARLPQLKRHIKQLLLDMGKVQQIATLCSV"
     exon            402..573
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            574..658
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            659..747
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            748..825
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            826..1039
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1040..1165
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1166..1248
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1249..1498
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1499..1687
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1688..1897
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1898..1954
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            1955..2062
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2063..2227
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2228..2409
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2410..2509
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2510..2705
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            2706..3060
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            3061..3223
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
     exon            3224..6648
                     /gene="Phf20l1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtcgcgtca gggctggccg gcggcggtgt cggcggcgaa ggcggcgaag gcgaaggcgg
       61 ctgcgatggt agcgaccccg gagtgggctt gagggctcgg accccgcttc ctctagcgcg
      121 tcctcgggcc gacgcggcgc cgcgggcccg gcttgctcag cgcccgcttc ctcccctacc
      181 gctgcccggg cagagtcgga cgaggcccgc gctggccgcc ctgacgcgac ccggctcggc
      241 cccggacggc ccggctgctg tgcggagacg aggccgagtc ggtagtggaa agaaagcact
      301 gaagaatagg atctcaagat gagtaaaaag cccccaaacc gtcctggaat cacttttgag
      361 attggtgctc gtttggaggc actcgactac ttacagaaat ggtatccatc acgaattgaa
      421 aaaattgatt atgaagaagg gaagatgcta gttcattttg agcgctggag tcatcgttat
      481 gatgagtgga tttattggga tagcaacagg ttgcgacccc ttgaaagacc ttcactaaga
      541 aaagaagggc taaaggacga ggaagatctt tttgatttta aagctggaga agaagttctg
      601 gctcgttgga cagactgtcg ctattaccct gccaagattg aagcaataaa caaagaagga
      661 acattcacag ttcagtttta tgatggcgta atccgttgtt tgaaaagaat gcacattaaa
      721 gccatgcctg aggatgctaa ggggcaggtg aaatcccagc atccactaag ctggtgttgt
      781 cctatcgacc cagctggatc gtgtaaccag tctatgggaa gtgaggactg gattgcttta
      841 gtcaaagcag ctgctgcagc tgcagcgaag aataaaacag ggtctaaacc tcgaaccagt
      901 gctaacagca ataaagagaa agagagagat gggggaaaat ggttcaaagt accttcaaag
      961 aaggcagaga cttccacatg tatagtcaca gcagagattg agaagaagga agagctaccc
     1021 acatctagtg aaccgtttgg acttcacata gacagcgttc caaagatcgt ctttccacag
     1081 ccagagagca cattaacaaa caagaggaaa aataatcaag gcaactcatt tcaggcaaag
     1141 agagcccgac ttaacaagat tactggcttg ttggcatcca aggcagttgg ggtggatggt
     1201 gctgaaaaaa aagaagactg cagtgcaaca gctccagtcc tggagcaggc gatttcacct
     1261 aaacctcaaa gtcagaaaaa aaatgaagct gtcattagca gttctgccaa cactcagaaa
     1321 cctgcactgt tatcctcaac tttgtcttca gggaaggctc gcagcaagaa atgcaaacat
     1381 gaatctggag agtcttctgg gtgtataaaa gcccctaagt caccacttgc cccagaatta
     1441 atacaagcca aggatttgac gcttgtatct cagctttctt cagtgataaa taaaactagt
     1501 tctccacagc ctgtgaatcc ccctagacct tgcaagcata gtgagagaag aagaagatct
     1561 cagcgcttag ccaccttacc catgcctgat gattctctag aaaagctttc ttcttcctct
     1621 tcagcaactg atgggaaagt attctccatc agttctcaga atcagcaaga gtcttcagta
     1681 ccagaagtgc ctgctattgc atatgtgccg ctccagaagc tgggaccctg tctccctctt
     1741 gatttaagtt gtggttcaga agtcacagga agtcaagccc cagattcctc ttaccctggt
     1801 ggtgaatgtc ccagggaaga aaaggaggag acaccattgt ttgcaaatcc cacctccaaa
     1861 gtagtgagtg atgtaaaagg agctgcagca gctacaggaa tattgaaaac agaaaaaaaa
     1921 gtgaaattgg aagaaaaaac ctccactgca tttggtaaaa ggaaagaaaa ggataaggag
     1981 agaaaagaga agcgagacaa agatcactac aaaccaaagc agaagaaaaa gaagaagaag
     2041 aagaaaaaat ctaaacagca cgactattcg gactacgaag acagttccct tgactttttg
     2101 gaaaggtgtt cttctccact aactagatct tctgggagtt ctctggctcc acgaagcaca
     2161 tttacggaga aaactacaac ctatcagtac ccaagggcaa ttctgtctgt tgatcttagt
     2221 ggtgaaaact tgtcagatgt ggaattcctg gatgactctt ccacagagag cctgcttctg
     2281 agtggggatg agtacaacca agactttgat tcaactaatt ttgaggagtc tcaggatgaa
     2341 gatgatgctc ttaatgagat tgtacggtgt atctgtgaac tggatgaaga gaatggcttc
     2401 atgatccagt gtgaagagtg cctatgctgg cagcacagtg tgtgcatggg gcttctggag
     2461 gacagcattc cggagcagta catctgctac atctgtcggg accctccggg tcagagatgg
     2521 aatgcaaaat atcgttatga taaggaatgg ttgaataacg gaagaatgta tgggttatct
     2581 tttgtaaaag aaaattattc tcatctcaat gccaaaaaaa tagtttccac acaccatctt
     2641 cttgctgatg tctatggtat aactgaagta ctgcatggat tgcagctcaa gattggaata
     2701 ctaaagaata aacatcatcc tgaccttcgt ctctgggcat attctgggaa gaggaaagat
     2761 caagatcagg tagtagctgg agctgagaga aaagtaatac ttcaggacac agctaactca
     2821 gaaggaagga aatatgtaca aaaccacaaa gaaccacccc tgaaaatgga agaaacttac
     2881 ataacaagtg aacacagcta tcaaaagcca cagagcttta gtcaggactg ccattctctc
     2941 acagaccctg gaagctcaga tgatgatgat gttagcagtt ttgaagaaga tggggaactc
     3001 catgtggcag ataatagcca tcttctgtac tcagtgaaag agcgtggagt gtcagagaag
     3061 aatccagctt cagagaataa agtgtttgtt tataatgata aaaagggcat ggagggccca
     3121 ggagacgcac atcttcagtg gcagctcaat ctcctcacac atatagaaaa tgtgcagaat
     3181 gaagtcacca gcaggatgga cctcatagaa aaagaagtgg acgttctgga gagctggctt
     3241 gatttcacag gggaattgga gccaccagat cccctggcaa gactacccca acttaagcgc
     3301 cacataaaac aactcttact tgacatgggc aaagtacaac aaattgcaac tctttgctct
     3361 gtataacaac ggtaaacatt tggtgacaag gatgtgtttt acttcagttg agtcactttt
     3421 attgctaagt ggatagtcaa aaagcttaat gtttggtcat ttactgattt gtgacttcaa
     3481 tagtatggca tcttggaaat aaaatgaaga actatttaat caaggaagct aacattaaaa
     3541 atgagtgaac aagctgcaaa tgataatgtc atctatgcca agaatcaatg agtataattc
     3601 aagctgcact aaaggaatgg aattggcagg attcttatag ttgctttcat gaagctcaag
     3661 atacctatag aaagaatcgt gacgtattta tagagggttt ttttaagaga tagccatgtt
     3721 tctaaaccag catctggcca aaatcacact gtaaggaaat tcaaattctg gagagttcta
     3781 caagtttcct ctaagaattg ccttctagca gttggatcca gctgcaaaga aacttaggtt
     3841 atttaaactt ctgtaggatc atgagttatt tcttggtgat gaatgtattt taatcagaaa
     3901 actgacaatg aaagtctcac tttgaggaaa ataattgtgg aattctaact tcattatgaa
     3961 tgtattttaa gaaacccacc aaataattgg aatttattgt gggcattgtg ctctttaaaa
     4021 gtaaagtggc ttgcagaagg gcccaatgtg ccaaatgttg atactgctgg agagaggatt
     4081 tgaatattgc aggaatcctt ccagctgcta tatgcaatgc cactaaccca tacaaacctg
     4141 tacaccacat gctgtgtgtg ctctgtatag gtgagtcgtg gtatccagac ttcagcctac
     4201 attgatcctg gatacacttg gtgtttgcct tttgaaaaaa actataaacc tcagctggga
     4261 tgaggagtga caaaaatatc aaaatatctg tggctgtggt tttttttttt aactgctagt
     4321 agtggaatac tggaaaagct tcatttctga agacaaattt tattttaaaa tataaatata
     4381 cactcacaaa ttttagcttt gttcacaaat ggacagattt atgaaaccaa aggcaactaa
     4441 gttgcttact cagctcttgc tggatttttg agcctaggtc ctactgtctg ccagtcctgg
     4501 tgcgagttgt gtgcacacca cagtgcttca tgtgcaggta tgcataagtg agtatgcttg
     4561 attaaatagt cgacatacat atgtacataa tcaacatatt tatatcacac atatctagtt
     4621 ttattactat agattataca aattggtggt taacataaaa tgttaccttt taacagactg
     4681 tttttaaaaa ctaaaagtgt atgtacaggt tttgaaattt ttttaaaagg gggaagaaaa
     4741 gactgttaag aggaggctat ttgatgacat tacacttgaa tattttttgc ctcattctgt
     4801 ttatcagttc tagcaatctg tataaacgca cttggaactg atcgacagtg aacttgaatt
     4861 tctctttgat aagaatacat gccactgtac attcagatat tatttaaatt tgcaaaacac
     4921 actgttctat atgtaaggta ctgtatgtaa aactctatta aaactctttc acatacccta
     4981 aaatttcagc ttgccttttt gcggccttaa gttttgatgt taggattaaa agaatgtgta
     5041 aaacattgaa aattttttat tgccttttga gatttttcaa ctgacaaatg tgccaaagat
     5101 catcaaacat aaaatgtagt cctctgtatt tacttgtgat agctaaactt tgtcaaagag
     5161 cctactgatg aatgctttag cagaagtcat tgtggggcag ttgcttaaat ttgcatatta
     5221 aagtaaaaat tagtgcctca aacccatgtg tggagtaaat gtactaatgt ttgtgtttcg
     5281 agattgatgc tgtattgttg atttgttttt tttttaaacg atggctgtaa aattgttcat
     5341 catgactgaa ccctatacat tgaatttgct tcttttcaga aatgtagcca gtaacgttct
     5401 tagtctgtaa agagtggtgt tgccttggtt cttgtcaaga actctgcatt cggtgaaact
     5461 cagcttctga gttctggaga ccttggataa aataatgcac agtgttgtag tacagagtaa
     5521 gtgctctcac acagtctgaa atgttccaca tttggagtac ccactggact ctgagtggaa
     5581 aggtacacac cttacttcat gtaggaggat cactgtcaaa atacaggctc actaaaaatg
     5641 tagtatataa catattcaag atatgtgttt aaattgtata caaaacagta gttaagttca
     5701 tgtttagact taagtttcat gccaagaaca tgtcatgtta aatacaaaga ctccagcatc
     5761 caagaaagca tcaaatccaa aatattttct tcccaagcat ttctgataat gaacactaaa
     5821 tttcagtctt aaaattcaat cactttgtta gcagttagga aattgagtac ttcattgatg
     5881 ttatgttaaa tgccccactc tgcttatttg tcaatgaatg agaaatctaa ttcttaaatt
     5941 tagatcttta aagaatatat cagtttatgt gcacataccc agttactcta gaaccaacca
     6001 acaattggtt aaggtccatt ataaggtaga gggcttaact tttctttgag agaatgaatt
     6061 atctttggag aagcaaatac attgtgagaa gtttcaggta agatttgttt tttcctttta
     6121 gtttcaccta aaattgttgt attgaaatct aagcaatgaa ctgggagaat attttctcca
     6181 aagataatgt ttcatttgcc agatggacaa gagtatgagc ctcagtggag ggattcctcc
     6241 tcataatttc tggcaaatat aatttgtact tctttgtggt tgtctatggt tccactgact
     6301 gttgaagtaa tgtattttct ccttaaagga acttgttatt cttagaattt caggtaaatc
     6361 acctgttcct aagtcgtttc aattcaatgt tcatactaaa atgtgtatac tttacatgtt
     6421 aaaactgaag catactactt cctccccaat aaactgaatc tgctgccact gtcactgtct
     6481 tggttaatag catcttatca gtatatgtgt aacatacaga gtcagcactt agtagtcact
     6541 tcatcactac ataaatgttt tctcaaaaac aatgacgtct tcctcaggcc tgttgggagc
     6601 ccattgtaag tcatggaggt aatgactcag ttttgcttac ctttttca
//
