LOCUS       NM_001398908            3345 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus PHD finger protein 14 (Phf14), transcript variant
            1, mRNA.
ACCESSION   NM_001398908 XM_006236107
VERSION     NM_001398908.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3345)
  AUTHORS   Kitagawa,M., Takebe,A., Ono,Y., Imai,T., Nakao,K., Nishikawa,S. and
            Era,T.
  TITLE     Phf14, a novel regulator of mesenchyme growth via platelet-derived
            growth factor (PDGF) receptor-alpha
  JOURNAL   J Biol Chem 287 (33), 27983-27996 (2012)
   PUBMED   22730381
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Dec 28, 2021 this sequence version replaced XM_006236107.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ209867.1, SRR26643292.16778.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-386               JAXUCZ010000004.1  40989912-40990297
            387-497             JAXUCZ010000004.1  40990735-40990845
            498-1261            JAXUCZ010000004.1  40997953-40998716
            1262-1406           JAXUCZ010000004.1  41006250-41006394
            1407-1566           JAXUCZ010000004.1  41019360-41019519
            1567-1678           JAXUCZ010000004.1  41025265-41025376
            1679-1816           JAXUCZ010000004.1  41026214-41026351
            1817-1963           JAXUCZ010000004.1  41039589-41039735
            1964-2234           JAXUCZ010000004.1  41041168-41041438
            2235-2341           JAXUCZ010000004.1  41041752-41041858
            2342-2437           JAXUCZ010000004.1  41042932-41043027
            2438-2541           JAXUCZ010000004.1  41044315-41044418
            2542-2673           JAXUCZ010000004.1  41046326-41046457
            2674-2842           JAXUCZ010000004.1  41062929-41063097
            2843-2893           JAXUCZ010000004.1  41074737-41074787
            2894-3015           JAXUCZ010000004.1  41074911-41075032
            3016-3133           JAXUCZ010000004.1  41115868-41115985
            3134-3345           JAXUCZ010000004.1  41161832-41162043
FEATURES             Location/Qualifiers
     source          1..3345
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q21"
     gene            1..3345
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /note="PHD finger protein 14"
                     /db_xref="GeneID:500030"
                     /db_xref="RGD:1563764"
     exon            1..386
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     CDS             386..3208
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="PHD finger protein 14 isoform 1"
                     /protein_id="NP_001385837.1"
                     /db_xref="GeneID:500030"
                     /db_xref="RGD:1563764"
                     /translation="MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGN
                     GSEDPSKDSGEGSCSDSEENILEEELNEDIKVKEEQLRNSTEEIMSSDKQLIKMEKKE
                     EEENGERPRKRKEKEKEKEKEREKDKEKATVSDSAAASAAGTTPATSPPAVTSPAVPT
                     TTTSSEEQVSEPKKWNLRRNRPLLDFVSMEELNDMDDYDSEDDNDWRPTVVKRKGRSA
                     SQKEGSDGDNEDDDDEGSGSEEDENDEGNDEDHSSPASEAGGKKKKSKVLSRNSADDE
                     ELTNDSLTLSQSKSNEDSLILEKSQNWSSQKMDHILICCVCLGDNSEDADEIIQCDNC
                     GITVHEGCYGVDGESDSIMSSASENSTEPWFCDACKCGVSPSCELCPNQDGIFKETDA
                     GRWVHIVCALYVPGVAFGDIDKLRPVTLTEMNYSKYGAKECSFCEDPRFARTGVCISC
                     DAGMCRAYFHVTCAQKEGLLSEAAAEEDIADPFFAYCKQHADRLDRKWKRKNYLALQS
                     YCKMSLQEREKQLSPEAQARINARLQQYRAKAELARSTRPQAWVPREKLPRPLTSSAS
                     AIRKLMRKAELMGISTDIFPVDNSDTSSSVDGRRKHKQPALTADFVNYYFERNMRMIQ
                     IQENMAEQKNIKDKLENEQEKLHVEYNKLCESLEELQNLNGKLRSEGQGIWALLGRIT
                     GQKLNVPAILRAPKERKPSKKEGGTQKTSSLPTVLYSCGICKKNHDQHLLLLCDTCKL
                     HYHLGCLDPPLTRMPRKTKNSYWQCSECDQAGSSDMEAEMAMETLPDGTKRSRRQIKE
                     PVKFVPQDVPPEPKKIPIRNTRTRGRKRSFVPEEEKHEERVPRERRQRQSVLQKKPKA
                     EDLRTECSTCKGTGENENLVRCDECRLCYHFGCLDPPLKKSPKQTGYGWICQECDSSS
                     SKEDENEAGKKNASQELSMEQKNPKK"
     exon            387..497
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            498..1261
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            1262..1406
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            1407..1566
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            1567..1678
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            1679..1816
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            1817..1963
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            1964..2234
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            2235..2341
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            2342..2437
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            2438..2541
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            2542..2673
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            2674..2842
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            2843..2893
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            2894..3015
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            3016..3133
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
     exon            3134..3345
                     /gene="Phf14"
                     /gene_synonym="RGD1563764"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagctgtatc cgggtcgttc ttctccctat tgtctctgac agtcggccct cgactggaaa
       61 ttctgggtct tttttgttgc ttctggtgca ggctaataaa agttttcttt ttatttccac
      121 tttttaccgg ggcacttcct ctcgcagggc ggccggttcg ggcctggcgc ccctggccag
      181 ggagcgcagg ggaagtggcg ccgggcgggc gtggggcggg gggagggacg gtagcccgcc
      241 cctggggtcg ccccagctcg gtcggcgcac cgccctgcct aaatagctgc tctccgattt
      301 gtctccttgg ccctctgcgc gtccctggta ccttgcctcc cgcatccttc cctaggtctc
      361 caaacgacca cctcacggat tccttatgga tcgcagctcc aagaggaggc aggtgaagcc
      421 tttggccgct tctctcctgg aagctcttga ttatgatagt tcagatgaca gtgattttaa
      481 agttggagat gcttcagatt ctgaagggag tggtaatgga agtgaagacc cttcaaagga
      541 cagtggagaa ggttcctgta gtgattctga ggaaaacatt ttagaagaag aactgaatga
      601 agatattaaa gtaaaagaag aacagcttag aaattctaca gaggaaataa tgtcatcaga
      661 caaacagtta attaaaatgg aaaagaagga agaagaagaa aacggagaaa gacctagaaa
      721 gagaaaggag aaagagaagg agaaagaaaa ggaaagagag aaggacaaag aaaaagcaac
      781 agtatctgat agtgctgctg cttctgctgc tggcaccaca ccagccacaa gccctcctgc
      841 tgttacctcc cctgctgtcc ccaccaccac cacttcatcg gaggaacaag tcagtgagcc
      901 caagaaatgg aatcttcgtc gaaaccggcc cctcttggac tttgtatcca tggaagagct
      961 gaatgatatg gatgattatg acagtgagga tgacaatgac tggagaccta ctgtagtaaa
     1021 gagaaagggg agatcggcat ctcagaagga gggcagtgat ggagacaatg aggatgatga
     1081 cgatgaggga agtgggagtg aggaagatga gaatgatgag ggcaatgatg aagaccatag
     1141 cagccctgct agtgaagcag gtggcaagaa gaagaagagt aaagttctta gcagaaacag
     1201 tgctgatgat gaggaactga ccaatgatag cctgacccta tctcaaagca agagtaatga
     1261 ggactcgctg attcttgaga agagtcaaaa ctggagttcc caaaaaatgg accacattct
     1321 gatttgctgt gtttgtcttg gagataatag tgaagatgca gacgaaatta ttcagtgtga
     1381 caattgtggc attacagttc atgaaggttg ttatggagta gatggggaaa gtgactctat
     1441 tatgagttcg gcttctgaaa actccactga gccttggttt tgtgatgcct gtaaatgtgg
     1501 tgtgtctccg agctgtgaac tgtgtcctaa tcaggatggg attttcaagg agaccgatgc
     1561 tggaagatgg gttcacattg tttgtgccct atatgttcct ggagtagcct ttggagatat
     1621 tgataaatta cgaccagtaa cattaacaga aatgaactat tctaaatatg gtgccaagga
     1681 gtgtagcttt tgtgaagacc ctcgctttgc tagaactgga gtttgcatta gctgtgatgc
     1741 aggcatgtgt agagcctatt ttcatgttac ctgtgcccag aaggaaggcc tgctttcaga
     1801 ggcagcagca gaagaggata tagcagatcc attctttgct tattgtaagc agcatgcaga
     1861 caggttagac agaaaatgga aaagaaaaaa ctacttggct ctacagtcct attgtaaaat
     1921 gtctctgcaa gagagagaaa aacagctgtc tcctgaagca caggcaagga tcaatgcccg
     1981 actacagcag tatcgtgcca aggcagagct ggctcgatct accagaccac aagcctgggt
     2041 tccaagggaa aagctaccca ggccactcac aagtagtgct tcggccattc gtaagcttat
     2101 gcgcaaagca gaactgatgg gaatcagtac ggatatcttt ccagtggaca actcagatac
     2161 tagttctagt gtggatggaa ggcggaaaca taagcagcca gctcttactg ctgattttgt
     2221 gaattactat tttgagagaa atatgcgcat gattcaaatt caggaaaata tggctgaaca
     2281 aaagaatata aaggataaat tagagaatga gcaagaaaag cttcatgtag aatataataa
     2341 gctctgtgaa tcgttagagg aactgcaaaa tcttaatggg aaacttcgaa gtgaaggaca
     2401 aggaatatgg gccttacttg gccgaattac agggcagaag ctgaatgtac cggcaatctt
     2461 acgagcacct aaggaaagaa aaccaagtaa aaaagaagga ggcacacaaa agacatcctc
     2521 tcttcctaca gtgctttata gttgtggaat ttgtaagaag aaccatgatc agcatcttct
     2581 tttactgtgt gacacctgta aactgcatta tcatcttggc tgccttgatc ctcctcttac
     2641 aagaatgccg agaaagacga aaaacagtta ttggcagtgc tcagagtgtg accaggcagg
     2701 gagcagtgac atggaggccg agatggccat ggaaaccttg ccagatggaa ccaaacgatc
     2761 aaggagacag attaaggagc cagtgaagtt tgtgccacag gatgtaccac cagaacccaa
     2821 gaagattcca ataagaaaca cgagaaccag aggacgaaag agaagctttg ttcctgagga
     2881 agaaaaacat gaggaaagag ttcctaggga aagaaggcag aggcagtctg tgctgcagaa
     2941 gaagcccaag gctgaagact taagaactga atgttcaact tgcaaaggaa ctggagagaa
     3001 tgagaatctc gtcagatgtg atgaatgcag actgtgctac cattttggct gtttagatcc
     3061 tcctttgaaa aaatctccta aacaaacagg ctatggatgg atatgtcagg aatgtgattc
     3121 ttcatcttct aaggaagatg aaaatgaagc tggaaagaaa aatgcatctc aggagctcag
     3181 catggagcag aaaaacccaa agaaataatg aaggatggtc tagtgttttc tgaagagttt
     3241 acaacttacg ctgaggctga taacatttct aatttgtaaa atgttaattg taaaatctaa
     3301 ttaacaaaac tcttctcaat aaagtccttg aaataggagc ttgga
//
