LOCUS       NM_001013117            4454 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus PHD finger protein 12 (Phf12), mRNA.
ACCESSION   NM_001013117 XM_001080701 XM_001080715 XM_220644
VERSION     NM_001013117.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4454)
  AUTHORS   Park SY, Gupta D, Hurwich R, Kim CH and Dziarski R.
  TITLE     Peptidoglycan recognition protein Pglyrp2 protects mice from
            psoriasis-like skin inflammation by promoting regulatory T cells
            and limiting Th17 responses
  JOURNAL   J Immunol 187 (11), 5813-5823 (2011)
   PUBMED   22048773
REFERENCE   2  (bases 1 to 4454)
  AUTHORS   Kaadige MR and Ayer DE.
  TITLE     The polybasic region that follows the plant homeodomain zinc finger
            1 of Pf1 is necessary and sufficient for specific phosphoinositide
            binding
  JOURNAL   J Biol Chem 281 (39), 28831-28836 (2006)
   PUBMED   16893883
REFERENCE   3  (bases 1 to 4454)
  AUTHORS   Yochum GS and Ayer DE.
  TITLE     Pf1, a novel PHD zinc finger protein that links the TLE corepressor
            to the mSin3A-histone deacetylase complex
  JOURNAL   Mol Cell Biol 21 (13), 4110-4118 (2001)
   PUBMED   11390640
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On or before Sep 4, 2008 this sequence version replaced
            XM_220644.4, XM_001080715.1, XM_001080701.1, NM_001013117.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4454
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q25"
     gene            1..4454
                     /gene="Phf12"
                     /note="PHD finger protein 12"
                     /db_xref="GeneID:303274"
                     /db_xref="RGD:1305731"
     exon            1..620
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     CDS             555..3569
                     /gene="Phf12"
                     /codon_start=1
                     /product="PHD finger protein 12"
                     /protein_id="NP_001013135.2"
                     /db_xref="GeneID:303274"
                     /db_xref="RGD:1305731"
                     /translation="MWEKMETKTIVYDLDTSGGLMEQIQALLAPPKTDEAEKRSRKPE
                     KESRRSGRATNHDSCDSCKEGGDLLCCDHCPAAFHLQCCNPPLSEEMLPPGEWMCHRC
                     TVRRKKREQKKELGHVNGLVDKSSKRTTSPSSDTDLLDRPASKTELKAIAHARILERR
                     ASRPGTPTSNASTETPTSEHNDVDEDIIDVDEEPVAAEPDYVQPQLRRPFELLIAAAM
                     ERNPTQFQLPNELTCTTALPGSSKRRRKEETTGKNVKRTQHELDHNGLVPLPVKVCFT
                     CNRSCRVAPLIQCDYCPLLFHMDCLEPPLTAMPLGRWMCPNHIEHVVLNQKNLTLSNR
                     CRVFDGFQDTISQHAVKVDFLNRIHKKHPPNRRVLQPAKRRSLKVPDAIKSQYQFPPP
                     LIAPAAIRDGELICSGVPEESQTHLLNSEHLATQTEQQEWLCSVVALQCSILKHLSAK
                     QMPSHWDSEQTEKADIKPVIVTDSSITTSLQTADKAPLPSHYPLSCPSAMSTQNSLGC
                     SPPHQPPTLEDISCSSCVEKSKKAPCGTANGPVNTEVKANGPHLYSSPTDSSDPRRLP
                     GANTPLPGLTHRQGWPRPLTPPSAGGLQNHAVGIIVKTENATGPSSCPQRSLVPVPSL
                     PPSIPSSCASIENTSTLHRKTVQSQIGPSLTESRPLGSPPNATRVLTPPQAAGDSILA
                     TGANQRFCSPAPSSDGKVSPGTLSIGSALTVPSFPANSTAMVDLTNSLRAFMDVSGEI
                     EINMLDEKLIKFLALQRIHQLFPSRGQASPGSVGTHPLSSGGHHTEVQRKEVQARAVF
                     YPLLGLGGAVNMCYRTLYIGTGADMDVCLTNYGHCNYVSGKHACIFYDENTKHYELLN
                     YSEHGTTVDNVLYSCDFSEKTPPTPPSSIVAKVQSVIRRRRHQKQDEEPSEEAAMMSS
                     QAQGPQRRPCNCKASSSSLIGGSGAGWEGTALLHHGSYIKLGCLQFVFSITEFATKQP
                     KGDANLLQDGVLAEKLSLKPHQGPVLRSNSVP"
     exon            621..802
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            803..875
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            876..1269
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            1270..1390
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            1391..1523
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            1524..1688
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            1689..1847
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            1848..2643
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            2644..2769
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            2770..2913
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            2914..3012
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            3013..3095
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            3096..3234
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
     exon            3235..4454
                     /gene="Phf12"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggcgatcc cggggcgcct gcgcgggtgg ctttgcgggc gctcgcggta agtttgcgcc
       61 aagtgcgcgg cagccgggac gcagacggca gcggcggcga gaggcggagc ccggggacca
      121 ccccccatca tcctccccag agtcacctca cgaaccacaa cctcacctaa cctctcaccc
      181 cccctccggt cccccaaccc agggatggca gcgcccgcta gccttcccgg ccggaccagc
      241 ggtcgccaga gccagcttta gcctgtgggc ctaggccccg ccaaggcctg acccccggag
      301 ccgagatcca ctgtgcaacc agccgccggg ccggggctga ggggttgctc ccctctcacg
      361 gcccgtggag aggacgctgc cgtcccaggg actgggggcc ggggggtggg ggggagccag
      421 ggcgaggaag tcggaaactg tgttgggaag agagaagggg accgggggtc agaagtgtcc
      481 tcttcccctc ctcccccctc cccccggggc tgggggggcc ggagcagaga gcgcccagcc
      541 cgggaggtgg atgaatgtgg gagaaaatgg agaccaagac gatcgtgtac gacttggaca
      601 cgtcgggggg gctgatggag caaatccagg ctctgctggc tccccccaag acggacgagg
      661 cagaaaagcg gagtcggaag ccggagaagg agtcccggag aagcggcagg gccaccaacc
      721 acgacagctg cgatagctgc aaggaaggtg gagatctctt gtgctgtgat cactgccctg
      781 ccgccttcca tctccagtgc tgtaaccctc cactgagtga agagatgttg cctcctgggg
      841 agtggatgtg tcaccggtgt actgtccgcc gaaagaaacg agagcagaaa aaggagctgg
      901 gccacgtcaa tggattggtg gacaagtcta gcaaacggac tacatctccc agcagtgaca
      961 ctgacttgtt ggacagacca gctagcaaaa ctgaactcaa ggccattgcc catgcccgga
     1021 tcctggaaag gagagccagc cggcctggca cccccacatc caacgccagc acagagaccc
     1081 ccacctctga gcataatgac gtcgatgagg acatcattga cgtggacgag gagccagtag
     1141 cagcagagcc ggactatgtg caaccccagc tgcggcggcc ttttgagctg ctgattgctg
     1201 ctgccatgga gcggaaccct acccaatttc agttgcccaa tgaactgact tgtaccactg
     1261 cactaccagg ttctagcaaa cggagaagaa aggaggaaac cacagggaag aatgtaaaaa
     1321 ggacacagca tgagttagat cataatggtc tcgttccctt gccagtcaaa gtctgcttca
     1381 cgtgtaacag gagttgtcga gtggcccccc tcatccagtg tgactattgc ccgcttctgt
     1441 ttcacatgga ctgcctcgag cccccgctca ctgccatgcc cctgggcaga tggatgtgtc
     1501 cgaatcacat cgaacatgtg gtgctgaacc agaagaatct gactctgagc aatcggtgcc
     1561 gggtgtttga tggattccag gacaccatct cacagcatgc tgtcaaagta gatttcctga
     1621 accgaatcca caagaagcac cctcccaacc gccgtgtgct ccagcccgcc aaaaggagaa
     1681 gcttgaaggt tcctgatgct ataaaatctc agtaccagtt tccaccccct ctcattgcac
     1741 ctgcggccat tcgggatggg gagctgatct gcagtggggt ccctgaggaa tcgcaaacgc
     1801 accttttgaa ctctgagcac ttagccaccc agacagagca gcaagagtgg ctctgtagtg
     1861 ttgttgccct ccagtgcagc atattgaaac atttatctgc taagcagatg ccttcgcatt
     1921 gggactctga acagacagag aaggctgata ttaagcctgt tattgtgact gacagctcaa
     1981 tcaccacctc cctgcaaaca gctgacaagg cacctctacc ttcccactac cctttgtcct
     2041 gcccctcagc aatgagcacc cagaattccc tgggctgctc tccaccccac caacccccaa
     2101 ccctagagga tatcagctgc agttcttgtg tggaaaagtc caagaaagcc ccttgtggga
     2161 ctgccaatgg gccagtgaac acagaggtaa aagccaatgg cccacacctc tacagcagcc
     2221 ccactgattc ctcggatccc cggcgactcc ctggcgccaa caccccttta ccgggcctca
     2281 ctcaccggca aggctggccc cggcccctca caccaccatc ggctgggggt cttcagaacc
     2341 acgccgtcgg catcattgtg aagacagaaa atgccactgg ccccagctct tgtccccaga
     2401 ggagtttggt acctgtccca agcctgcccc cttccattcc cagctcttgt gccagcatcg
     2461 agaacaccag cactttgcat agaaagactg tccaatcaca gataggacct tcgttgacag
     2521 aatcgaggcc tctgggctca cccccaaatg ccacccgggt gctcactccc ccccaagctg
     2581 caggagacag tatcttggcc acaggcgcca accaacgatt ctgctcacca gcgccatcat
     2641 cagatggcaa ggtcagcccc ggcacgttat ccataggaag cgctttaacc gtaccctctt
     2701 tcccagccaa ctctactgcc atggtggacc tcaccaactc acttcgagca tttatggatg
     2761 tcagcggaga aatcgagata aatatgttgg acgagaagct gatcaagttt ctggccttgc
     2821 agagaataca tcagcttttc ccttcccggg gtcaagcttc accgggcagt gttgggacac
     2881 atccgctgtc ttctggaggg caccacacag aagtgcaaag gaaggaggta caagcccgag
     2941 ctgtgttcta ccccctctta gggttgggag gagctgtgaa catgtgctat cgaaccctct
     3001 acatcgggac aggagctgac atggatgtgt gccttacaaa ctatggtcac tgtaactacg
     3061 tgtccgggaa acatgcctgc atattctacg atgagaatac caaacattat gagctgttaa
     3121 actacagtga gcacgggaca acggtggaca atgtgctgta ttcatgtgac ttctctgaga
     3181 agaccccgcc aaccccccca agcagtattg ttgccaaagt acagagtgtc atcaggcgcc
     3241 gccgacacca gaaacaggat gaagagccaa gtgaggaggc agccatgatg agttcccagg
     3301 cccaggggcc acagcggaga ccttgcaatt gcaaagccag cagctcaagc ttgatcgggg
     3361 gcagtggggc cggctgggag ggcacagcct tactacacca tggcagctac atcaagctgg
     3421 gctgcctgca gtttgtcttc agcatcactg agtttgcgac caaacagccc aaaggcgatg
     3481 ccaacctgct gcaggatggg gtcttggctg agaagctctc tctcaagccc catcagggcc
     3541 ctgtgctgcg ctccaactcc gttccctagg ccattggcct ggacacccat ccaagactcc
     3601 tgcaatgcaa aaatgtatac gaaccaagcc cgggtgtttt ctataccaga aacccttcaa
     3661 ctacaatctt tgcatgaaat gaagaaaacc ttttgactgt tttttaagac tttttttctt
     3721 ttctcaagtt ctagggggca tttgcacata tatttgtact caacatttca tgggaaagcg
     3781 gcagatcgag ctgaggacca gcatgggcag ggaggggaga gcctggtctg gacacttctt
     3841 ccagcacaat cccttccccc gcctcctgct ccttcccctc ggccgcctgc ccgctgttgt
     3901 aaaataatca gaaacttgtt ctattttgtg gcagtgacaa tagttttata ttaaaagaaa
     3961 aaaatacagt tttcatacag caaaatctat acaatatcat tgttttattt aatataaaga
     4021 tcgctaccca ctcctctccg tggttcccac cctacaagga tcccctttct gcagcggttg
     4081 cactactggt agctactgtg tatacggaca aatgagaaat gaattctttt tctggctgtt
     4141 catctatttt atttcaaata aggaaaagtg tatttggatt ttgtgtaaat acatctagtg
     4201 atggcatttt ttcaatgttt ttaagaactg tgtacagtac atgtggtaga gtgtttttct
     4261 caaattgtct attgtagcga aggcgttttt gtcgtaaacc tgttatgtgt cctttttttt
     4321 gttctctgac cacttctctt cctcacccag atacttcctc ttccccacaa ctagtaccaa
     4381 tgtacatagt aatgtaatgt tttagacttt acagaaactt tcctgtattc tgtatataaa
     4441 aaccaaaaat actt
//
