LOCUS       NM_001014235            1351 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus PHD finger protein 11B (Phf11b), mRNA.
ACCESSION   NM_001014235 XM_344412
VERSION     NM_001014235.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1351)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC088253.1.
            
            On Apr 1, 2005 this sequence version replaced XM_344412.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088253.1, CV076207.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132274,
                                           SAMEA5760383 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..1351
                     /gene="Phf11b"
                     /gene_synonym="Phf11l"
                     /note="PHD finger protein 11B"
                     /db_xref="GeneID:364393"
                     /db_xref="RGD:1359377"
     exon            1..56
                     /gene="Phf11b"
                     /gene_synonym="Phf11l"
                     /inference="alignment:Splign:2.1.0"
     CDS             14..895
                     /gene="Phf11b"
                     /gene_synonym="Phf11l"
                     /codon_start=1
                     /product="PHD finger protein 11-like"
                     /protein_id="NP_001014257.1"
                     /db_xref="GeneID:364393"
                     /db_xref="RGD:1359377"
                     /translation="MAQEEPGGSNSVLNGDANSDKKMEKWTCALCPEGHDWSVIYFEP
                     SSNIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSFCNNKGAT
                     VGCDLQSCPKNYHLHCAKEDRAILQVDEDYGTYKLFCQRHAPGGQEPTQVDAAVKASF
                     LKKCLEAGLLTELFEQIQQKMISIHGRFMDDTASESDYEGIKILLFDCGLFKDTLIKF
                     EEAIKSKACECEERLNQMKQQLELLADLQQNLRSFQECGVLDPSGSTSGSLLPPEDHQ
                     CRCQESPEVQAGSGDSL"
     exon            57..178
                     /gene="Phf11b"
                     /gene_synonym="Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            179..286
                     /gene="Phf11b"
                     /gene_synonym="Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            287..420
                     /gene="Phf11b"
                     /gene_synonym="Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            421..470
                     /gene="Phf11b"
                     /gene_synonym="Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            471..602
                     /gene="Phf11b"
                     /gene_synonym="Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            603..674
                     /gene="Phf11b"
                     /gene_synonym="Phf11l"
                     /inference="alignment:Splign:2.1.0"
     exon            675..1328
                     /gene="Phf11b"
                     /gene_synonym="Phf11l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caggtaccca gccatggccc aagaggaacc tgggggctcc aactcagtcc tgaatggtga
       61 cgctaatagt gacaaaaaga tggagaagtg gacatgtgcc ctctgccctg aaggccatga
      121 ctggagtgtg atttacttcg aaccatcatc gaatatagca gctcatgaaa actgtctgct
      181 gtattcatca ggactggtgg agtgtggtcc tcatgatcca cgtaatccag ccagaagctt
      241 tgctgtcaaa tcagtgaaga aagagatctg gagagggaga agattgaaat gctcattttg
      301 taataacaag ggagccaccg tgggatgtga tttacagtct tgtcccaaga attaccactt
      361 acactgtgcc aaggaggacc gcgcaattct acaagttgat gaggattatg gaacttacaa
      421 attattttgc caacgacatg ctccaggggg tcaagaaccc acacaagttg atgcagctgt
      481 caaagcttct tttcttaaga aatgcctgga agcaggactt cttactgaat tatttgaaca
      541 gatacaacaa aaaatgattt caattcatgg aagattcatg gatgatactg cttcagagtc
      601 agactatgaa gggatcaaga tcttactgtt tgactgtgga ctatttaaag acacgttaat
      661 aaaattcgaa gaagcaatca agagcaaagc ttgtgaatgt gaagaaaggc tgaaccagat
      721 gaagcagcag cttgagttac ttgcagattt acaacaaaac ctgcgctcat ttcaagaatg
      781 tggggtcctg gatccctcag gctctacttc agggtccttg ctacctcctg aggaccacca
      841 gtgcagatgc caggagtctc ctgaagtgca agcaggctca ggagacagcc tgtgacagat
      901 ccagtcccct ccagctctga cctgctactg ctcagccagg ctccatacct gacaggttgt
      961 ttcttggctc ctctcttgtc atctcacttg tcctgccttc tcctgacagt aacagctgtt
     1021 cctccagtca actggatcag gcccccatgt cctctaagga gcaggaagtc ctcctaccta
     1081 ccctacccac cctagtcagg ggcagccaca ccacagcctt tgctcatcct tttgtggaat
     1141 cttagagctt tcttcttgct tctgctactc ctgcagtagg tctgtgtcat catggtctcc
     1201 tctcagtatt agtgacttca tcagaatgga gcagagcctc actcctgtgc atagctcgct
     1261 ggtaccctgg gtttctgctc actaccacct tcccaacatt gagcacactt aataaatgct
     1321 tgacaaaaaa aaaaaaaaaa aaaaaaaaaa a
//
