LOCUS       NM_001024272            1662 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus PHD finger protein 11 (Phf11), mRNA.
ACCESSION   NM_001024272 XM_008770787 XM_341331
VERSION     NM_001024272.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1662)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 1662)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Apr 16, 2023 this sequence version replaced NM_001024272.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088433.1, SRR26360172.922460.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-258               JAXUCZ010000015.1  37590759-37591016   c
            259-380             JAXUCZ010000015.1  37588092-37588213   c
            381-488             JAXUCZ010000015.1  37579391-37579498   c
            489-622             JAXUCZ010000015.1  37576143-37576276   c
            623-672             JAXUCZ010000015.1  37574302-37574351   c
            673-737             JAXUCZ010000015.1  37573389-37573453   c
            738-801             JAXUCZ010000015.1  37572576-37572639   c
            802-933             JAXUCZ010000015.1  37571926-37572057   c
            934-1005            JAXUCZ010000015.1  37570520-37570591   c
            1006-1662           JAXUCZ010000015.1  37568090-37568746   c
FEATURES             Location/Qualifiers
     source          1..1662
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p12"
     gene            1..1662
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /note="PHD finger protein 11"
                     /db_xref="GeneID:361051"
                     /db_xref="RGD:1310853"
     exon            1..258
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /inference="alignment:Splign:2.1.0"
     CDS             216..1226
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /note="PHD finger protein 11a; PHD finger protein 11
                     family member-like"
                     /codon_start=1
                     /product="PHD finger protein 11"
                     /protein_id="NP_001019443.1"
                     /db_xref="GeneID:361051"
                     /db_xref="RGD:1310853"
                     /translation="MAEETAPPCGPVSTGGSLSPEKMEKRTCALCPDGHEWSVIYFAP
                     SANIAAHENCLLYSSGLVECGPHDPRNPARSFAVKSVKKEIWRGRRLKCSLCNKGGAT
                     VGCDLSSCRKSYHYVCAKKDHAIPQVDEDLGTYKIFCPEHPPQQEETTERADSPSVKK
                     TGKKKSLSSGPPTEPKKMKFSRFKRLMKEEPHGHKDAAVKAPFLKKCLEAGLLTELFE
                     QILEKMDSIHGRFMDETASESDYEGIKTLLFDCGLFGDILRKFQEVIKSKTCEYEERL
                     NQMKQKLEALADLQENLCSFQECGDLDPSGSTSGSLLPPEDHQCRCQESPEVQAGSGD
                     SL"
     exon            259..380
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            381..488
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            489..622
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            623..672
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            673..737
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            738..801
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            802..933
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            934..1005
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /inference="alignment:Splign:2.1.0"
     exon            1006..1662
                     /gene="Phf11"
                     /gene_synonym="Phf11a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acattggcag agaaaccagt cctgagcact tttaacctga ctatgcagtg ttgaaaatct
       61 gccagcatgc actgctccca gagtgcactc cctcccgact gggtcttccc gatcaccaca
      121 caagcttaca gaaacgaaac taaaagctag aagcagaacc tgtaaaccct aaactagaaa
      181 ctcagttgca cttccaggag tgcaagtgcc cagtcatggc cgaagagaca gcaccaccat
      241 gtggcccagt ctcaactggt ggcagtctgt ctccagagaa gatggagaag aggacatgtg
      301 ccctctgccc tgatggtcat gagtggagtg tgatttactt tgcaccatca gcaaatatag
      361 ctgctcatga aaactgtttg ctgtattcat caggactggt ggagtgtggt cctcatgatc
      421 cacgtaatcc agccagaagc tttgctgtaa agtcagtgaa gaaagagatc tggagaggga
      481 gaagattgaa atgctcactg tgtaacaaag gaggtgccac cgtgggatgt gatttgtcat
      541 cctgtaggaa gagttaccac tatgtctgtg ccaaaaaaga ccacgcaatt cctcaagttg
      601 atgaggatct tggaacttac aaaatatttt gcccagaaca tcctccacag caagaagaga
      661 ccactgaacg tgctgatagt ccaagcgtga agaagacagg aaagaagaaa agtctctcat
      721 cgggccctcc cacagagcca aaaaagatga aattcagtag atttaaaaga ctcatgaagg
      781 aagagcctca cggccacaaa gatgcagctg tcaaagctcc ttttcttaag aaatgcctgg
      841 aagcaggact tcttactgaa ttatttgaac agatactaga aaaaatggat tcaattcatg
      901 gaagattcat ggatgagact gcttcagagt cagactatga agggatcaag accttactgt
      961 ttgactgtgg actatttgga gacatactaa gaaaattcca agaagtaatc aagagtaaaa
     1021 cttgtgaata tgaagaaagg ctgaaccaga tgaagcagaa gcttgaggca ctcgcagact
     1081 tacaagaaaa cctgtgctca tttcaagaat gtggggacct ggacccctca ggctctacct
     1141 cagggtcctt gctacctcct gaggaccacc agtgcagatg ccaggagtct cctgaagtgc
     1201 aagcaggctc aggagacagc ctgtgacaga tccagtcccc tccagctctg acctgctact
     1261 gctcagccag gctccatacc tgacaggttg tttcttggct cctctctagt catctcactt
     1321 gtcctgcctt ctcctgacag taacagctgt tcctccagtc aactggatca ggcccccatg
     1381 tcctctaagg agcaggaagt cctcctacct accctaccca ccctagtcag gggcagccac
     1441 accacagcct ttgctcatcc ttttgtggaa tcttagagct ttcttcttgc ttctgctact
     1501 cctgcagtag gtctgtgtca tcatggtctc ctctcagtat tagtgacttc atcagaatgg
     1561 agcagagcct cactcctgtg catagctcgc tggtaccctg ggtttctgct cactaccacc
     1621 ttcccaacat tgagcacact taataaatgc ttgacaaaac ac
//
