LOCUS       NM_001024747            1644 bp    mRNA    linear   ROD 09-DEC-2020
DEFINITION  Rattus norvegicus PHD finger protein 10 (Phf10), mRNA.
ACCESSION   NM_001024747 XM_214780
VERSION     NM_001024747.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Conti V, Carabalona A, Pallesi-Pocachard E, Parrini E, Leventer RJ,
            Buhler E, McGillivray G, Michel FJ, Striano P, Mei D, Watrin F,
            Lise S, Pagnamenta AT, Taylor JC, Kini U, Clayton-Smith J, Novara
            F, Zuffardi O, Dobyns WB, Scheffer IE, Robertson SP, Berkovic SF,
            Represa A, Keays DA, Cardoso C and Guerrini R.
  TITLE     Periventricular heterotopia in 6q terminal deletion syndrome: role
            of the C6orf70 gene
  JOURNAL   Brain 136 (Pt 11), 3378-3394 (2013)
   PUBMED   24056535
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Shain AH and Pollack JR.
  TITLE     The spectrum of SWI/SNF mutations, ubiquitous in human cancers
  JOURNAL   PLoS One 8 (1), e55119 (2013)
   PUBMED   23355908
REFERENCE   3  (bases 1 to 1644)
  AUTHORS   Hargreaves DC and Crabtree GR.
  TITLE     ATP-dependent chromatin remodeling: genetics, genomics and
            mechanisms
  JOURNAL   Cell Res 21 (3), 396-420 (2011)
   PUBMED   21358755
  REMARK    Review article
REFERENCE   4  (bases 1 to 1644)
  AUTHORS   Lessard J, Wu JI, Ranish JA, Wan M, Winslow MM, Staahl BT, Wu H,
            Aebersold R, Graef IA and Crabtree GR.
  TITLE     An essential switch in subunit composition of a chromatin
            remodeling complex during neural development
  JOURNAL   Neuron 55 (2), 201-215 (2007)
   PUBMED   17640523
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AABR07001769.1.
            
            [WARNING] On Jun 29, 2023 this sequence was replaced by
            NM_001024747.3.
            
            On Jun 16, 2015 this sequence version replaced NM_001024747.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098049.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01906349 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-141               AABR07001769.1     84565-84705         c
            142-248             AABR07001769.1     82662-82768         c
            249-379             AABR07001769.1     80131-80261         c
            380-463             AABR07001769.1     79327-79410         c
            464-597             AABR07001769.1     78338-78471         c
            598-747             AABR07001769.1     78093-78242         c
            748-857             AABR07001769.1     77319-77428         c
            858-1011            AABR07001769.1     75902-76055         c
            1012-1167           AABR07001769.1     73845-74000         c
            1168-1276           AABR07001769.1     69965-70073         c
            1277-1465           AABR07001769.1     69514-69702         c
            1466-1644           AABR07001769.1     68328-68506         c
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="mixed"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1644
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /note="PHD finger protein 10"
                     /db_xref="GeneID:292404"
                     /db_xref="RGD:1305266"
     exon            1..141
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     exon            142..248
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     CDS             196..1551
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /note="BRG1-associated factor 45a"
                     /codon_start=1
                     /product="PHD finger protein 10"
                     /protein_id="NP_001019918.2"
                     /db_xref="GeneID:292404"
                     /db_xref="RGD:1305266"
                     /translation="MGSGDSSRSCETSSQDLSFSYYPAENLIEYKWPPDETGEYYMLQ
                     EQVSEYLGVTSFKRKYPDLERRDLSHKEKLYLRELNVITETQCTLGLTALRSDEVIDL
                     MIKEYPAKHAEYSVILQEKERQRITDHYKEYSQMQQQSTQKVEASKVPEYIKKAAKKA
                     AEFNSNLNRERMEERRAYFDLQTHVIQVPQGKYKVLPTDRTKVSSYPVALIPGQFQEY
                     YKRYSPDELRYLPLNTALYEPPLDPELPALDSDGDSDDGEDGGGDEKRKNKGTSDSSS
                     GNVSEGDSPPDSQEDTFQGRQKSKDKMATPRKDGSKRSVLSKSVPGYKPKVIPNALCG
                     ICLKGKESNKKGKAESLIHCSQCDNSGHPSCLDMTMELVSMIKTYPWQCMECKTCIIC
                     GQPHHEEEMMFCDVCDRGYHTFCVGLGAIPSGRWICDCCQRAPPTPRKVGRRGKNSKE
                     G"
     exon            249..379
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     exon            380..463
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     exon            464..597
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     exon            598..747
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     exon            748..857
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     exon            858..1011
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     exon            1012..1167
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     exon            1168..1276
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     exon            1277..1465
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
     exon            1466..1644
                     /gene="Phf10"
                     /gene_synonym="BAF45a"
                     /inference="alignment:Splign:2.0.8"
ORIGIN      
        1 cgacggcgcg acgaacgacg gaggcgcggg gtcgctgggc gctgatggca gcgggccggg
       61 cccgggcggg cgctgatccc ccgcggcggt tgcggacagt tttcggaccc gaggcctccc
      121 ccggagcgcc agtccccgaa ggatgataat gaagataact caaatgatgg gggtcatcca
      181 tctaaaagaa gacgaatggg ttcaggggat agttcaagaa gttgcgagac ttcaagtcaa
      241 gatcttagct tcagttacta cccagcagaa aacttaatag aatacaaatg gccacctgat
      301 gaaacaggag aatactacat gcttcaggag caagtcagtg aatatctggg tgtgacctcc
      361 ttcaagcgga aatatccaga tttagagcga cgagatttat ctcacaagga gaaactgtac
      421 ctgagagaat taaacgtcat cacggaaaca cagtgcacac taggtttaac agcattgcgc
      481 agtgatgaag tgattgactt aatgataaaa gaatatccag ctaaacacgc tgaatattct
      541 gttattctac aagaaaagga acgtcagaga attacagatc attataaaga gtattctcaa
      601 atgcagcaac agagtactca gaaagtcgaa gccagcaaag tgcctgagta cattaagaaa
      661 gccgccaaga aggcagcaga gtttaacagc aacttaaacc gggagcgcat ggaagaaaga
      721 agagcgtact ttgacttgca gacgcatgtc atccaagtgc ctcaagggaa gtacaaagtg
      781 ttgccaacag accgaacgaa ggtcagttcc tatccagtgg ctctcatccc cgggcagttc
      841 caggagtact ataagaggta ctcaccagat gagcttcggt acttgccatt aaacacagcc
      901 ctgtatgagc cgcccctgga cccagagctc ccggcactag atagtgatgg agactcagat
      961 gacggtgaag acggtggagg ggatgagaag cggaagaata aaggcacttc ggacagctcc
     1021 tcaggcaatg tgtctgaagg agacagcccc cctgacagcc aggaggacac cttccaggga
     1081 agacagaaat caaaagacaa aatggccacg ccaagaaaag acggctccaa acgttctgta
     1141 ctgtccaaat cagttcctgg gtacaagcca aaggtcattc caaatgctct atgtggaatt
     1201 tgtctgaagg gtaaggagtc caacaagaaa ggaaaggctg aatcacttat acactgctcc
     1261 cagtgtgata acagtggcca cccttcttgc ttggatatga ccatggagct tgtttctatg
     1321 attaagacct acccatggca gtgtatggaa tgtaagacat gcattatatg tggacagccc
     1381 caccatgaag aagaaatgat gttctgtgat gtgtgtgaca gaggttatca tactttttgt
     1441 gtgggccttg gtgctattcc atcaggtcgc tggatttgtg actgttgtca gcgagctccc
     1501 ccaacaccca ggaaagtggg cagaaggggg aaaaacagca aagaggggta aataggcttt
     1561 gaccctcgtg tttgggatat ttggtgccaa tttatttaca acactttcat ttttatgcca
     1621 ataaagaact ttttttgaaa ttaa
//
