LOCUS       NM_001414742            2215 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus PHD finger protein 1 (Phf1), transcript variant
            1, mRNA.
ACCESSION   NM_001414742 XM_006256117
VERSION     NM_001414742.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ragazzini,R., Perez-Palacios,R., Baymaz,I.H., Diop,S., Ancelin,K.,
            Zielinski,D., Michaud,A., Givelet,M., Borsos,M., Aflaki,S.,
            Legoix,P., Jansen,P.W.T.C., Servant,N., Torres-Padilla,M.E.,
            Bourc'his,D., Fouchet,P., Vermeulen,M. and Margueron,R.
  TITLE     EZHIP constrains Polycomb Repressive Complex 2 activity in germ
            cells
  JOURNAL   Nat Commun 10 (1), 3858 (2019)
   PUBMED   31451685
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Herz,H.M., Garruss,A. and Shilatifard,A.
  TITLE     SET for life: biochemical activities and biological functions of
            SET domain-containing proteins
  JOURNAL   Trends Biochem Sci 38 (12), 621-639 (2013)
   PUBMED   24148750
  REMARK    Review article
REFERENCE   3  (bases 1 to 2215)
  AUTHORS   Lu,R. and Wang,G.G.
  TITLE     Tudor: a versatile family of histone methylation 'readers'
  JOURNAL   Trends Biochem Sci 38 (11), 546-555 (2013)
   PUBMED   24035451
  REMARK    Review article
REFERENCE   4  (bases 1 to 2215)
  AUTHORS   Saha,S., Hu,Y., Martin,S.C., Bandyopadhyay,S., Russek,S.J. and
            Farb,D.H.
  TITLE     Polycomblike protein PHF1b: a transcriptional sensor for GABA
            receptor activity
  JOURNAL   BMC Pharmacol Toxicol 14, 37 (2013)
   PUBMED   23879974
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 2215)
  AUTHORS   Patel,D.J. and Wang,Z.
  TITLE     Readout of epigenetic modifications
  JOURNAL   Annu Rev Biochem 82, 81-118 (2013)
   PUBMED   23642229
  REMARK    Review article
REFERENCE   6  (bases 1 to 2215)
  AUTHORS   Musselman,C.A., Avvakumov,N., Watanabe,R., Abraham,C.G.,
            Lalonde,M.E., Hong,Z., Allen,C., Roy,S., Nunez,J.K., Nickoloff,J.,
            Kulesza,C.A., Yasui,A., Cote,J. and Kutateladze,T.G.
  TITLE     Molecular basis for H3K36me3 recognition by the Tudor domain of
            PHF1
  JOURNAL   Nat Struct Mol Biol 19 (12), 1266-1272 (2012)
   PUBMED   23142980
REFERENCE   7  (bases 1 to 2215)
  AUTHORS   Ballare,C., Lange,M., Lapinaite,A., Martin,G.M., Morey,L.,
            Pascual,G., Liefke,R., Simon,B., Shi,Y., Gozani,O., Carlomagno,T.,
            Benitah,S.A. and Di Croce,L.
  TITLE     Phf19 links methylated Lys36 of histone H3 to regulation of
            Polycomb activity
  JOURNAL   Nat Struct Mol Biol 19 (12), 1257-1265 (2012)
   PUBMED   23104054
REFERENCE   8  (bases 1 to 2215)
  AUTHORS   Vaz Meirelles,G., Ferreira Lanza,D.C., da Silva,J.C., Santana
            Bernachi,J., Paes Leme,A.F. and Kobarg,J.
  TITLE     Characterization of hNek6 interactome reveals an important role for
            its short N-terminal domain and colocalization with proteins at the
            centrosome
  JOURNAL   J Proteome Res 9 (12), 6298-6316 (2010)
   PUBMED   20873783
REFERENCE   9  (bases 1 to 2215)
  AUTHORS   Han,Y., Song,X.X., Feng,H.L., Cheung,C.K., Lam,P.M., Wang,C.C. and
            Haines,C.J.
  TITLE     Mutations of t-complex testis expressed gene 5 transcripts in the
            testis of sterile t-haplotype mutant mouse
  JOURNAL   Asian J Androl 10 (2), 219-226 (2008)
   PUBMED   18286210
  REMARK    GeneRIF: We established that mutations that occur in the Tctex5
            long transcript of the t-haplotype mice are important for normal
            sperm function, whereas the short transcript of Tctex5 might have a
            conserved function among different tissues.
REFERENCE   10 (bases 1 to 2215)
  AUTHORS   Kawakami,S., Mitsunaga,K., Kikuti,Y.Y., Ando,A., Inoko,H.,
            Yamamura,K. and Abe,K.
  TITLE     Tctex3, related to Drosophila polycomblike, is expressed in male
            germ cells and mapped to the mouse t-complex
  JOURNAL   Mamm Genome 9 (11), 874-880 (1998)
   PUBMED   9799836
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000020.1.
            
            On Dec 12, 2022 this sequence version replaced XM_006256117.4.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.2332264.1,
                                           SRR26360194.226148.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMN06621351
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-202               JAXUCZ010000020.1  5019975-5020176
            203-377             JAXUCZ010000020.1  5020843-5021017
            378-459             JAXUCZ010000020.1  5021100-5021181
            460-555             JAXUCZ010000020.1  5021278-5021373
            556-656             JAXUCZ010000020.1  5021726-5021826
            657-805             JAXUCZ010000020.1  5021918-5022066
            806-901             JAXUCZ010000020.1  5022208-5022303
            902-970             JAXUCZ010000020.1  5022432-5022500
            971-1094            JAXUCZ010000020.1  5022588-5022711
            1095-1162           JAXUCZ010000020.1  5022795-5022862
            1163-1267           JAXUCZ010000020.1  5022958-5023062
            1268-1436           JAXUCZ010000020.1  5023184-5023352
            1437-1531           JAXUCZ010000020.1  5023445-5023539
            1532-1612           JAXUCZ010000020.1  5023885-5023965
            1613-2215           JAXUCZ010000020.1  5024130-5024732
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p12"
     gene            1..2215
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /note="PHD finger protein 1"
                     /db_xref="GeneID:294287"
                     /db_xref="RGD:1303205"
     exon            1..202
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            203..377
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     CDS             219..1901
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /note="T-complex testis-expressed 3; polycomb-like 1"
                     /codon_start=1
                     /product="PHD finger protein 1"
                     /protein_id="NP_001401671.1"
                     /db_xref="GeneID:294287"
                     /db_xref="RGD:1303205"
                     /translation="MAQLPRLSRLGAPSLWDPASPAPTSGPRPRLWEGQDVLARWTDG
                     LLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDISPAALPGEELLCCVCRSETVVPGN
                     RLVSCEKCRHAYHQDCHVPRAPAPGEGEGSSWVCRQCVFAIATKRGGALKKGPYARAM
                     LGMKLSLPYGLKGLDWDAGHLSNRQQSYCYCGGPGEWNLKMLQCRSCLQWFHEACTQC
                     LSKPLLYGDRFYEFECCVCRGGPEKVRRLQLRWVDVAHLVLYHLSVCCKKKYFDFDRE
                     ILPFTSENWDSLLLGELSDTPKGERSSKLLSALNSHKDRFISGREIKKRKCLFGLHAR
                     TPPPVELLTGDGSPTSFPSGQGPGGGVSRPLGKRRKSEPEPLRRRQKGKVEELGPPTA
                     AHSRHGSQEQRALQASESPPPPSPNQSYQGSSGYNFRPTDARCLPSSPIRMFASFHPS
                     ASTAGTSGDSEPPDRSPLELHIGFPTDIPKSSPHSVTASSSSVPALTPGLSRHSLPPS
                     PLCRSLSPGTGGGVRGGVSYLSRGDPVRVLARRVRPDGSVQYLVEWGGGGIF"
     exon            378..459
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            460..555
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            556..656
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            657..805
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            806..901
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            902..970
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            971..1094
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1162
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1267
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            1268..1436
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            1437..1531
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            1532..1612
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
     exon            1613..2215
                     /gene="Phf1"
                     /gene_synonym="Tctex3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gactcctcct gccgctgctg ctgctttggc tgctgcgtca tacgccccag agcggccagg
       61 acggaggggc tgggcccggg gacccccctg gcctccacct gcacgcccct cggcgctcac
      121 actcagtctt cccgcaccgg ggactcaccc agatctcttg ggtctgcccc tacctggctt
      181 ccagctgccc cagctgtcac cgcccacccc aggatgcaat ggcgcagctc ccccggctga
      241 gccgtttggg tgctccctct ctttgggacc cagcctcccc tgctcccacc tcaggcccca
      301 gacctcggct ttgggaaggt caagatgtgc tggcaagatg gactgatggg ctcctgtact
      361 tgggcaccat caaaaaggtg gacagtgcgc gggaggtgtg tctggtccag tttgaggatg
      421 attcccagtt tctagttcta tggaaggaca tcagcccagc cgcccttcct ggtgaggagc
      481 tcctctgttg tgtgtgtcgc tctgagaccg tggtccctgg gaaccggctg gtcagctgtg
      541 agaagtgtcg ccatgcctat caccaggact gtcacgtccc cagggcccca gcccctggag
      601 aaggagaggg cagctcctgg gtctgccgcc agtgtgtctt tgcgattgcc acaaagaggg
      661 gaggtgccct gaagaagggt ccctatgccc gggccatgct gggcatgaaa ctctccctgc
      721 cgtacggtct gaaagggctg gactgggacg ccggacatct gagcaacagg cagcagagct
      781 actgttactg cgggggcccg ggggagtgga acctgaaaat gctgcaatgc cggagctgcc
      841 tccagtggtt ccatgaggcc tgcacccagt gtctgagcaa gcccctcctt tacggagaca
      901 gattctatga atttgaatgc tgtgtgtgcc ggggcggccc tgagaaagta cggaggttac
      961 agcttcgctg ggtggatgtg gcccatcttg ttctctacca tctcagcgtt tgctgtaaga
     1021 agaaatattt cgattttgac cgagagatcc tccccttcac ctctgagaat tgggacagtc
     1081 tgctcctggg ggagctttca gacactccca aaggagaacg ctcttccaag ctcctttctg
     1141 cccttaacag ccacaaggac cgtttcattt cagggaggga gattaaaaag aggaaatgcc
     1201 tttttggtct ccatgctcgg acccctcctc ctgtggagct tctcactgga gatggatccc
     1261 ccaccagctt cccttcaggg cagggccctg ggggaggggt ctcacgtccc ctggggaaac
     1321 gccggaagtc ggagccagaa cccttgagga ggaggcagaa ggggaaagtg gaggaactgg
     1381 ggccacccac agcagctcac agtcggcatg ggtcccagga gcagagggcc ctgcaggcct
     1441 cagagtctcc accacccccc agccctaacc agagctacca gggcagcagc ggctacaact
     1501 tccggcccac agacgcccgc tgtctgccca gcagccccat ccggatgttc gcctccttcc
     1561 acccttctgc cagcactgca gggacctctg gggacagtga acccccagac aggtcacctc
     1621 tggaacttca cattggcttc cccacagaca tccctaaaag ttctccccac tcagtgactg
     1681 cctcgtcttc ctcggtccca gccctgaccc caggcctttc tagacattca ctgccccctt
     1741 ctcccttgtg ccgtagtttg tctccgggga ctgggggagg agtccgaggt ggggttagct
     1801 acctgtcccg gggtgaccct gtcagggtcc ttgctcgaag agtgcggcct gatggctctg
     1861 tgcagtacct agtcgagtgg ggaggagggg gcatcttctg acagctcact tgtgctcacc
     1921 tccccatgca cacactggca ctttcacgcc ctgacctctg acctcaccta cagctgggat
     1981 gtacctggag agacggagtg gttctccctc ctgcccaggc tggaatccag ggggttggag
     2041 aagaggtcct cttctctgcc ccttgatgac tcctaacccc cctcccattc cctttgatgt
     2101 tattttgtta cagcttttga aatatttttt aagagtattt aaccctgggg tatagagact
     2161 tggggggggg gtccaggatt ccagactgta tgactaataa agagaaataa accta
//
