LOCUS       NM_001376816            2337 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus PH domain containing endocytic trafficking
            adaptor 1 (Pheta1), mRNA.
ACCESSION   NM_001376816 XM_002724821 XM_002727967
VERSION     NM_001376816.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2337)
  AUTHORS   Noakes,C.J., Lee,G. and Lowe,M.
  TITLE     The PH domain proteins IPIP27A and B link OCRL1 to receptor
            recycling in the endocytic pathway
  JOURNAL   Mol Biol Cell 22 (5), 606-623 (2011)
   PUBMED   21233288
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On or before Nov 20, 2019 this sequence version replaced
            XM_002727967.4, XM_002724821.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.305862.1,
                                           SRR22399481.335946.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN16676787 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-157               JAXUCZ010000012.1  40377654-40377810   c
            158-240             JAXUCZ010000012.1  40376209-40376291   c
            241-338             JAXUCZ010000012.1  40375681-40375778   c
            339-2337            JAXUCZ010000012.1  40372553-40374551   c
FEATURES             Location/Qualifiers
     source          1..2337
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..2337
                     /gene="Pheta1"
                     /gene_synonym="Fam109a; IPIP27A; RGD1310656; Ses1"
                     /note="PH domain containing endocytic trafficking adaptor
                     1"
                     /db_xref="GeneID:288664"
                     /db_xref="RGD:1310656"
     exon            1..157
                     /gene="Pheta1"
                     /gene_synonym="Fam109a; IPIP27A; RGD1310656; Ses1"
                     /inference="alignment:Splign:2.1.0"
     exon            158..240
                     /gene="Pheta1"
                     /gene_synonym="Fam109a; IPIP27A; RGD1310656; Ses1"
                     /inference="alignment:Splign:2.1.0"
     exon            241..338
                     /gene="Pheta1"
                     /gene_synonym="Fam109a; IPIP27A; RGD1310656; Ses1"
                     /inference="alignment:Splign:2.1.0"
     exon            339..2337
                     /gene="Pheta1"
                     /gene_synonym="Fam109a; IPIP27A; RGD1310656; Ses1"
                     /inference="alignment:Splign:2.1.0"
     CDS             356..1060
                     /gene="Pheta1"
                     /gene_synonym="Fam109a; IPIP27A; RGD1310656; Ses1"
                     /note="family with sequence similarity 109, member A; 27
                     kDa inositol polyphosphate phosphatase interacting protein
                     A"
                     /codon_start=1
                     /product="sesquipedalian-1"
                     /protein_id="NP_001363745.1"
                     /db_xref="GeneID:288664"
                     /db_xref="RGD:1310656"
                     /translation="MKLNERSLAFYATCDAPVDNAGFLYKRGGRGAGSHRRWFVLRGN
                     ILFYFESESSREPLGVILLEGCTVELVDAREEFAFAVRFAGGRSRPYVLAADSQAALE
                     GWVKALSRASFHYLRLVVRELEQQLAAMREGSPANALPDANPSTVLNPKPKENGRAVW
                     SALPEQPAVAPRRPPLPPRRRASAANGPSVSFAQLHERYGLEVRALRNQWRGGLTSLE
                     VPCHPGSGETQTQDQP"
ORIGIN      
        1 aggggcggga ccctactggg cgggccgctc agggttaaag gggcgcccgc gggtcgccgc
       61 ggctcggcct ccgggagaca aagcgccctc tcgtagccgc ccccgagtgg ttccgggcca
      121 tgggcgggac aggccatcgc gtctgtccca cttctaggct cctgagcaca cactacacac
      181 tggacactca aatccagacg gaaaaatcct ccccttccag agcaggcatg agtgatccag
      241 acaaagaagg agaggtccag agagactgac tgtgtgcccc tgaggtgacc cagcctggag
      301 actgtgagcc accttgggac gggagtgagc ggcttgcggt gcaggcctcg tggccatgaa
      361 actcaacgag cgcagcctgg ccttctacgc gacctgtgac gctccggtgg acaatgcggg
      421 cttcctgtac aaacgtggtg ggcgtggggc cggctcgcac cggcggtggt tcgtgcttcg
      481 cggcaacata ctcttctact tcgagtcgga atcgagccga gagccactgg gcgtcatcct
      541 gctggagggc tgcacggtgg agctggtgga cgcccgggag gagttcgcct tcgccgtgcg
      601 ctttgcgggt ggccgttccc ggccttatgt gctggcagcg gacagccagg ccgccctgga
      661 gggctgggtg aaggcactgt cccgggccag cttccactac ctgcgcttgg tggtgcgtga
      721 gctggagcag cagctggcag ccatgcgcga gggaagcccg gccaacgcct tacccgacgc
      781 caacccaagt acggttttga acccgaaacc caaggagaac ggccgggcgg tgtggagcgc
      841 tctgcctgag caacccgctg tagccccccg ccgcccacca ctgccacccc gccgcagggc
      901 ctccgcggcc aacgggccct cggtatcctt cgcccagctg catgagcgat acggactcga
      961 ggtgcgggcc ctcaggaatc agtggcgtgg aggcctcacc agcctggaag tcccctgcca
     1021 tcctggttct ggtgagactc aaacccagga ccagccttaa gagacctaat ggctgtgagc
     1081 tttgatgcaa gccaggggac ataggacaca tgactcagga gatctgggct cctggggtca
     1141 gaggcatgca cttctgagaa gaatctggga cctgaacctg aaggtgcttc tagagcccaa
     1201 ggagctggtt tctagaggac tctgccccag ggcggcctgg gtggacctcg atggccctgg
     1261 agctgtgggg ctcagggtcc agctggtgcc cggcctctca agaatcttga acctgctagc
     1321 tgctgtctgc tgctgtctca gccgctgctc tgggcctaaa gcagcaggta gagggtggag
     1381 cttgaatggg ataggtcccc aaggcttctg gcctggatcc tgctaaggca ggactttgcc
     1441 cagttttgca ggcaggcctc acaactctgc ttgggcagga gcagggcctt tcaggcctgg
     1501 gctgggatcc agctcctcac aggttcacct ggaggagaca ggcctccaac tgattccatg
     1561 cctgcaggga gagagttcag gcactgtccc tggccactgc aggtgaccag tgagcctcca
     1621 agcggggcct acttcccact caccacagtg ctggctgtct tccagagtgt tgggcaggac
     1681 aagcagcccc acctgggtct tgtttacagt cctcctcagt gccccgcccg gggactggag
     1741 gacactactc caatctcggc atcctattga cagatttcac ctggtccccc cttctcctct
     1801 gtccctggag gccctgagct ggggttccat gggttcttct gtcttgccag agcctcttga
     1861 ctccctgctg gctcaggggc cagggcttgg ttgtgggttt tttgaagtac agaggacact
     1921 gtcttttcca tccccacccc caccactttt gtcactgttg gctggctgga aggggtggca
     1981 ttgtccctag ggagccaggc cctagcagga gacacaggcg cctactgact tggcccttac
     2041 ctctgtctcc tgggctcagc tctctgcaca ggtagtgcct ctggggacgg tctcctcaac
     2101 tctcccactc tcggctcagg acgttcggag tggcccagct ggaggcctga agtgtagact
     2161 ctggtccgtg cgggatgggt ttacaaactc taaaggaaca ggacagaagc tgggggggca
     2221 agggtagaga tgcccccttt ccccaaagca caagataaag tccagctgat tctggcgtag
     2281 gagagagaat cagccacgga cggggtacga gggccaaaat aaaagctggt ctagtaa
//
