LOCUS       XM_039111276            4921 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatase and actin regulator 4
            (Phactr4), transcript variant X6, mRNA.
ACCESSION   XM_039111276
VERSION     XM_039111276.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039111276.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4921
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4921
                     /gene="Phactr4"
                     /note="phosphatase and actin regulator 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 32 ESTs, 1 long SRA read, 8 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 10 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:682920"
                     /db_xref="RGD:1592823"
     CDS             370..2628
                     /gene="Phactr4"
                     /codon_start=1
                     /product="phosphatase and actin regulator 4 isoform X6"
                     /protein_id="XP_038967204.1"
                     /db_xref="GeneID:682920"
                     /db_xref="RGD:1592823"
                     /translation="MEAIPPLSTLANSGMEDPFDTAPPTPTCWLYSGMTPVSESTKRK
                     ALFWCHHSTRHMIEEAERPSGDPGLVMDSVEAGDTTPPTKRKSKFSGFGKIFKPWKWR
                     KKKSSDKFKETSEVLERKISMRKPREELVKRGVLLEDPEQGGEDSGKLSHAALKNGHT
                     TPIGSVRSSSPILSEEEAEGSLRNLTPEEDPKKRLGSTGSQPSSEAEPGPEQASKQPL
                     LPPKRPLSSSDEGNEGQAKEVPAGSAARPVSSTSGSGIETPAATTAATDMTKTLTKSF
                     VASTPAPTPAPRTLPAAPASTNTTATHPAPAKQPPIPPPKPAQRNSNPIIAELSQAMN
                     SGTLLSKPSPPLPPKRGIPSTSVSSSEPAASATAKTANDQREKTVSLCLEPPLTIPPS
                     SPSPPLPTHIPPEPPRSPLVPAKTFQMVPEVEFSPSLDRFQDISQQEDQKKEVPKKIQ
                     DQSFGESHIPSRLPPVPLHIRIQQALTSPLPVTPPLEGTHRAHSLLFESSDSFSEDTG
                     TLGRTRSLPITIEMLKVPDDDEEEQICPFVEDMTSTSATPKLPPCLQEEEKESDSDSE
                     GPIQYRDEEEDDDDDESYQSALANRVKRKDTLAMKLSSRPSEPETSLSSWPCKSKEEW
                     NEIRHQIGNTLIRRLSQRPTAEELEQRNILQPKNEADRQAEKREIKRRLTRKLSQRPT
                     VAELLARKILRFNEYVEVTDAQDYDRRADKPWTKLTPADKAAIRKELNEFKSSEMEVH
                     VDSKHFTRYHRP"
ORIGIN      
        1 ggccaggcgc ctcgcagcgg agggccggcg gttcccgcca ttttgtcccg ctcgccacgc
       61 cgctggccac aggagtggac tacaagtccc gtgaggctcc gcggccgcac ttcctaccct
      121 cactgtccgg cccgctccct ccgtcccccc tcccctgggg ccgaaggctc tggctggagc
      181 caggcggcca gagaccaggt aggatttccg ggagaaagta ctgtggagcc agaggaggca
      241 gcggcgacct ggcaaaggaa aagtgagtgg gcggatcctg gaccaagagt ctgtcccctg
      301 gtaaaacgtg gaggtgtttt gaggggtgta ggggaggctg ccttgttgcc atgccggggc
      361 ctgtatgtga tggaagctat tcctcctctg tctacgctgg ctaacagtgg catggaggat
      421 ccatttgaca ctgctccccc aacccctacg tgctggttgt attctgggat gactcctgtt
      481 agtgaaagca ccaagcggaa agccttgttt tggtgccatc acagtactag gcacatgata
      541 gaagaagcgg agcggccctc tggagaccca ggcctggtga tggacagtgt ggaagcaggg
      601 gacacaacac ctcccaccaa aaggaaaagc aagttctcag gttttggcaa gatcttcaag
      661 ccgtggaaat ggaggaaaaa aaaaagcagt gataaattca aagagacatc agaagtttta
      721 gagcgaaaaa tatctatgcg aaaaccaaga gaagagctgg ttaaaagagg ggttctattg
      781 gaagaccccg agcagggtgg tgaagattca ggaaagctga gccatgctgc attaaagaat
      841 ggacacacca cccccatagg gagtgtcagg tcttctagtc caatcctttc ggaagaagag
      901 gcagagggaa gtctcaggaa tcttactcca gaagaggatc caaagaagag acttggctca
      961 actggaagcc agcccagctc tgaagcagag cctgggcctg agcaagcatc taagcagccc
     1021 ctgctgcccc ccaagagacc cctgtcctct tctgatgaag gaaacgaggg gcaggcaaag
     1081 gaggtcccag ccggcagtgc agcaagaccg gtctcctcca cttctggctc tggcattgag
     1141 acacctgctg ccaccactgc tgccacagac atgacaaaga ccttaacaaa gtcctttgtg
     1201 gcctcgaccc ccgcccccac ccccgccccc aggactctgc ctgctgctcc tgccagcact
     1261 aacactactg ccacccatcc agccccggcc aagcaaccgc ccatcccacc ccctaaacca
     1321 gctcagagaa acagcaaccc catcatcgct gaactgtccc aagcaatgaa cagtggcaca
     1381 ctgttgtcga aaccatcccc acccttgcca cccaagagag gcattccatc aacttcggta
     1441 tccagctcgg agcctgctgc ttcagccaca gctaagacag caaatgatca aagagaaaaa
     1501 actgtctctt tgtgtttgga accaccgctg acaatcccgc cttcgtcccc gtcacctccc
     1561 ctgcctaccc acatacctcc agagcctcca cggtcccctc tagtccctgc taagactttt
     1621 caaatggtgc cagaagttga gttctcccct tctttagatc gattccagga catttcccag
     1681 caggaagatc agaaaaagga agtccccaag aagatacagg accagagctt tggggagtcc
     1741 catataccct ccaggcttcc cccagtccca ctgcatatcc gaattcagca ggcccttacc
     1801 agcccccttc ctgtgacccc tcccttggaa ggaactcata gagcccattc actgctcttt
     1861 gagagcagtg acagcttctc cgaggacact ggcaccctgg gtcggaccag gtcacttcct
     1921 atcacgattg aaatgttgaa agttccagat gatgacgagg aagagcagat ctgcccgttt
     1981 gttgaagaca tgacatctac ctcagctact cctaaactac caccgtgtct gcaagaggaa
     2041 gagaaggaga gcgactcaga ttcagagggt cccattcagt atcgagatga ggaggaagat
     2101 gatgatgatg atgaaagcta tcagagtgcc ctggccaaca gagtgaagag gaaggacacg
     2161 ctggcaatga agctgagcag cagacccagc gaaccagaga ccagcctgag ttcttggcct
     2221 tgtaaaagca aggaggagtg gaatgaaata cggcaccaga tcgggaacac gctgatccgg
     2281 cggctgagtc aaagaccaac agcagaagag ctggagcaac ggaacatact acagcctaaa
     2341 aatgaagctg atcgccaagc agagaaacgg gaaattaaac gtcgactcac tagaaagctc
     2401 agccaaaggc caactgtggc tgagctactt gccaggaaga tcctgaggtt taatgagtat
     2461 gtggaggtga cggacgctca ggactatgac cggcgagcag ataagccttg gaccaaactg
     2521 actcctgctg acaaggctgc catcaggaaa gaattaaatg agtttaagag ctcggagatg
     2581 gaggttcacg tagacagcaa acacttcaca cgctaccatc gcccatgaag ctgaagcctg
     2641 agaaaggaac taaaggacca ctgggaaagc atagctgttt tgttgcttgt ctccagggcg
     2701 accataacac ttcctgcaca gccagacctg ctctgggatc tggttcgggg cagacagcac
     2761 tcgtatgcat gtagcctttc ctcggtatgg atccttgtgc acctcttaga gaagaacgaa
     2821 acaccagata cttttgagcc ttttaacaac actgcagcag acttgaggac ttttctctca
     2881 ccagccacag aggcacagag ccacttgcag ggtctgagtt ttactggccg cagcacaagc
     2941 tgccctaaga cacctgcgtg tactggggcc gtttgtacca ttagcctgtc tgctctgtct
     3001 gagagtcttc atgcaggcgt aattcagcca tcaagtcctc ttaccagaaa aaaccttctg
     3061 gaggcaccac cccttggagc aaaagggacc cgcttccaga gaaagtgcct ggacctcact
     3121 ggtgtcagtt cagagaccgc actttaagga ctgaccagaa ggaagctcag gctctggcct
     3181 gtcccttcct ctatttggta cttgtcatcc taggtccttt ctttttattt tgagacaaga
     3241 tcttattctg tggcttaggc tggcctgcaa actcccatct cggcctccca agtgctggcc
     3301 cttattttaa agtgaactta aagaaatggg ggaatttatt cattccatgg tctgagctgt
     3361 aaccagaatc caagtgatca cttgagtgca tttcctgtgt acaaaccaag aaaaaggcct
     3421 taatattaaa taacgccagt ttggtagaga actgactcag agggtagact attatatgtt
     3481 ccttgtacca aatgatattg taaaccactt cagcctgtgg gagcaccgtg tgggagcacc
     3541 tgtgggagca ctgtgtgcta caggtgcgcg tgcctctaga cagagccctc tccttggtgc
     3601 tcttgaccct ccttactgca cagtccctct ctacagcatt agcccctccc acctcccgac
     3661 agcgaacacc tcacttgtct ttccattcca tgttggagcc agcgtggttg gtgcctgtgt
     3721 tttctagtca ggcctccccg tttgcatttg ggtgctggtt tgcttattgt ctcaaagaac
     3781 ttttctcctg aaacctacac agcctcaccg ttccctcctg aattctattt acattgtaag
     3841 tggtagagaa atgttataat gggtttgttt atattttttg tttttgtttt agtttgtacc
     3901 tcagtatgta gcccaggcta gcctttgaag tgaagtcttc cttactcagc cttcccagtc
     3961 tgggatcata gacggcaagt catacccagc tttttctcac cttaacatct agtaagttgt
     4021 gcgtctttaa attttttttt ttgctttatt ctgtttcctg tctatatttt ttcagcaatg
     4081 ttctctgtgt caacgtcata cttattaaag agttagaata caggacaaac aaaaaagcta
     4141 aagtgacctt agaactcgta ctttgttctc tatggaggaa aaagtgcttt gggtttttgt
     4201 tgttgttttt tttttttccc tcttactgcc agatagtttc tggctatgaa aaaaagactg
     4261 cgtcccacct cccagtctgt gagaagtcta ggtacaaggt tgctagagct gttaaccttt
     4321 gtgatcgcat tctgttctgt gctcctgaag gagggaggct cagttctcac aagcgaggcg
     4381 ggtgcctgct ccacccctgt tccttcctgc ttagtcctgg gtttatagag cactttatgg
     4441 gcctgtgctg cctgtgctgt ggtaactttg tgttttatta gacaggctct catgtcacct
     4501 cacaatgtag ccaaggatct gcctccaccc cctgcttaca gggctcacag aggcacccac
     4561 catgcctgcc tgtcttgtct ccctgctgct ttccctgcct cacagtgcca agcctgactc
     4621 cccgtgtgct tgtgtgtgcc atcaagggcc ctgactcaca gttcatctca ttcgtcttct
     4681 gcagcgtcat ctgttagggc ggcatctagc ccgtggtttt gtttttatgt atataaaagt
     4741 tgattacgtg tttctttctg taatttgaag cttacaatca taatgtaaaa gggtaaaagc
     4801 ttctcatgtt gtaggttaag atgcttctcc agtgtacaga atcttgtaaa ataaataatt
     4861 acattgtata tcagtcttcc caccaatctt aattattaaa gtattttaga atattaaaaa
     4921 a
//
