LOCUS       XM_221142               2291 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylglycerophosphate synthase
            1 (Pgs1), transcript variant X1, mRNA.
ACCESSION   XM_221142
VERSION     XM_221142.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 25, 2024 this sequence was replaced by
            NM_001427486.1.
            
            On Jan 21, 2021 this sequence version replaced XM_221142.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2291
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2291
                     /gene="Pgs1"
                     /note="phosphatidylglycerophosphate synthase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 35 ESTs, 2 long SRA reads, 7 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 238 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:303698"
                     /db_xref="RGD:1305052"
     CDS             36..1697
                     /gene="Pgs1"
                     /codon_start=1
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase, mitochondrial isoform X1"
                     /protein_id="XP_221142.5"
                     /db_xref="GeneID:303698"
                     /db_xref="RGD:1305052"
                     /translation="MAAPAAGPVFWRRLLGLLPGRPGLAALLGRLSDRLGRSRERRRR
                     RSPWLLLAPLLSPTVPQVTSPPCCLCPEGVHRFQWIRNLVPEFGVSSSHVRVLSSPAE
                     FFELMKGQIKIAKRRVVMASLYLGTGPLEQELVDCLESSLEKSLQAKFPSDLKVSILL
                     DFTRGSRGRKNSRTMLLPLLQRFPEHVRVSLFHTPNLRGLLRLLIPERFNETIGLQHI
                     KVYLFDNNVILSGANLSDSYFTNRQDRYVFLQDCAEIADFFTELVDAVGDVSLQLQGD
                     DTVEVVDGMVHPYKGDRAAYCRAANKRVMDVIHSARTRQQMLHAQTFHSDSLLSQEEA
                     AAAGDRRPAPDTWIYPLIQMKPFEIQIDEIVTETLLTEAERGAKVFLTTGYFNLTQAY
                     MDLVLGTRAEYQILLASPEVNGFFGAKGVAGAIPAAYVHIERQFYSEVCSLGQQDRVQ
                     LQEYWRRGWTFHAKGLWLYLAGSSLPCLTLIGSPNFGYRSVHRDLEAQIAIVTESRAL
                     QQQLHQEQEQLYLRSGVVSSATFEQPGRQVKLWVKMVTPLIKNFF"
ORIGIN      
        1 ttctcgcgcg ccggaagcgg aagcggcggg tctccatggc ggcgccggca gcgggcccgg
       61 tgttctggag gcggctgctg ggcctgctgc ctggccggcc cgggctggcc gcgctcctgg
      121 gccgcctctc cgaccgtctg ggcaggagcc gggagcgccg gcgccggagg tcaccatggc
      181 tgttactggc tcccttgctg tcaccaactg ttcctcaggt cacttcccca ccttgctgcc
      241 tatgtcccga gggtgtgcac cggttccagt ggatcagaaa cctggtccca gaatttggag
      301 tctccagctc tcatgtaagg gtgctgtctt cccctgcaga gttcttcgag ctcatgaagg
      361 ggcagataaa aatagccaag aggcgagttg tgatggcatc cctttacttg gggacaggac
      421 ctttggaaca ggaactggtg gattgtctgg aaagttctct agaaaagtca ctacaagcga
      481 agtttccttc cgacctcaag gtctccattc tcctggactt caccaggggc tcaagaggta
      541 ggaagaactc tcgcactatg ctgctcccac tcctgcagag gtttccagag cacgtgcgcg
      601 tttccctctt ccatacgcca aacctccgag gactcctccg actccttatc cctgagcgct
      661 tcaatgagac catcggcctc cagcacatca aggtgtacct ctttgacaac aacgtcatct
      721 tgagtggtgc aaacctgagt gactcgtact tcaccaaccg ccaggaccgc tatgtgttct
      781 tgcaagactg cgctgagatc gcagacttct tcacggagct ggtggatgct gtgggggatg
      841 tgtccttgca gttgcagggt gatgacacag tggaggtggt ggatgggatg gtgcaccctt
      901 acaaaggtga ccgggctgcg tactgcagag cagctaacaa acgggtcatg gacgttattc
      961 actcagccag gacccgacag cagatgctgc atgcacagac ctttcacagt gactccctgc
     1021 tgagccagga agaggctgca gctgctggtg atcgcagacc agcaccggac acctggattt
     1081 acccactgat ccagatgaag ccctttgaga ttcagataga tgagatagtc actgagaccc
     1141 tgctgacgga agctgagcgg ggagctaagg tcttcctcac cactggctac ttcaacctga
     1201 cacaggccta catggacctg gtgctaggca ctcgagccga gtatcagatc cttctagcct
     1261 caccagaggt gaacggcttc tttggggcta agggtgtggc cggcgccatc ccagctgcct
     1321 atgtgcacat tgagcgacag ttctacagtg aagtgtgcag cctggggcaa caggatcggg
     1381 tccagctcca ggaatactgg cgcaggggct ggacctttca tgccaaaggc ctctggctgt
     1441 acctggcagg gagtagcctg ccctgcctca cgctgattgg ctctcctaat tttgggtaca
     1501 ggtcagttca ccgggacctg gaggcccaga ttgccatcgt aacagagagc cgagccctgc
     1561 agcagcagct tcaccaggag caagagcagc tctacctgcg gtctggtgtg gtttcctctg
     1621 cgacctttga gcagccaggt cggcaggtca agctgtgggt gaagatggtg accccgctga
     1681 tcaagaactt cttttgagaa caggaatggc cttgatgaag atgacgggca tgactggggt
     1741 cagatccttc agctttgctt cagcaatgac tccggtctgg gtgtcccagc gagctcctgt
     1801 ggggacaatg gagctgaggg tctgggtgcc ccaggggagg cagaacccac tgtttggagt
     1861 gctgactgtg aaaaagggag gcacggtagg gagagaggcc tggcctccaa cctccccact
     1921 cttttcagag acaggccagt gactgggagc cctgaagagt tcaggccagg tgccagggcc
     1981 tgagagtgcc aaacacagag gagtgtggac cgaggactcc gaagtgactc gcatgccgta
     2041 acggttctga ggctgcatct tctcagagct tcatctccgc cttctcaatg tcagtggcag
     2101 agaaaactga ccgcagccta attccagcag tgtaccctcc tgattcttca tgtgtaatgt
     2161 ctactctgtg tgtgtacata gggataagtt atatatatgc acctataaac actgtctgct
     2221 gtctctcatc ctagccagtg gtggtgtgtg tcctgcgtgg cattggaatc acaataaaca
     2281 tggagaatgg t
//
