LOCUS       XM_039101003            6328 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus pyroglutamyl-peptidase I-like
            (Pgpep1l), mRNA.
ACCESSION   XM_039101003
VERSION     XM_039101003.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039101003.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            internal stop codons :: corrected 1 genomic stop codon
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..6328
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6328
                     /gene="Pgpep1l"
                     /note="pyroglutamyl-peptidase I-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 38
                     ESTs, 2 long SRA reads, 3 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 7 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:365280"
                     /db_xref="RGD:1561859"
     CDS             72..686
                     /gene="Pgpep1l"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: substituted 1 base at 1
                     genomic stop codon"
                     /codon_start=1
                     /transl_except=(pos:489..491,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: pyroglutamyl-peptidase
                     1-like protein"
                     /protein_id="XP_038956931.1"
                     /db_xref="GeneID:365280"
                     /db_xref="RGD:1561859"
                     /translation="MDSQSRCVVVTGFGPFRQHLVNSSWEAVKELSKLGLGVDIELQT
                     LQLPVDYREVKQRLTAIWEEFQPQLAVHVGMDTSTKAIFLEQCGKNRGYRDSDVRGFQ
                     PEDGVCLPGGPEVMLSVINMKEVCRRVAVEDVEVAFSXDAGRYICDYTYYLSLHLGTG
                     HAALIHVPPLSPCLSVSLLGKALQVIIQEMLEESGEVQTQRTAA"
ORIGIN      
        1 gccacactcc ccacgtggtc ttttctgtcc tggatcctgg ctggaccagc ccagcgcagc
       61 agctgggtct catggattcg cagtcccgct gtgtggtggt gaccggtttt gggcccttcc
      121 ggcagcacct ggtgaattcc agctgggaag cggtgaagga actctccaag ctgggcttag
      181 gggtggacat agaacttcaa actctgcagc tgcctgtgga ttacagggag gtaaaacaga
      241 ggctcactgc aatctgggaa gaatttcaac cacaacttgc tgtgcatgtg ggcatggaca
      301 cctccaccaa ggccatcttt ctggaacagt gtggtaagaa ccgaggctat cgggactccg
      361 atgtaagagg cttccagcct gaggatggag tgtgcctccc agggggcccg gaagtgatgc
      421 tgtccgttat caacatgaag gaggtctgtc ggcgtgtggc tgttgaggat gtcgaagtgg
      481 ccttttcctg agatgcgggc aggtacatct gtgattacac ctactacctg tctctgcacc
      541 ttgggactgg gcatgcagca ctcatccacg tccctcctct gtcaccctgc ctctcagtca
      601 gccttctggg caaagccttg caagtcatca tccaagaaat gctggaagaa agtggggaag
      661 tccagactca aagaactgca gcttaaggga cacagcgggg ggggggggga tgccttcatt
      721 agatgatgtt tcaagtgtgg gtggagaggc agttgtactg tgagaggctc taaataagtg
      781 actagtgaaa cggttacaaa gctaggggtg gtggcatcag gtggacacac agaatcagac
      841 ttattttagt gtctaaagta agaagaaaaa ccccaaaggc agatgcttca taaggggatt
      901 aactagggga cgctatgact ttcttgacaa taatatgcaa gacactggtc tcccttccaa
      961 ggctgcgtgg tccttcctgg attggtgtga tgacagagct gcttcagagg gtccagaaaa
     1021 ggcaggctta gccctggctc agggggccca gattctgatc cccaagcttg tcatttaggt
     1081 cttgtgaatg gctttggggc cacccagtct ctagtccccg ccatcatctt tttttaaaaa
     1141 aaagatttat ttattttata taagtacact gtagctgtct tcagacacac cagaagaggg
     1201 catcggatcc cattacagat ggttgggagc caccatgtgg ttgctgggat ttgaactcag
     1261 gacctctgga agagcagtca gtgctcttaa ccactgagcc atctctccag cccctcactt
     1321 gtcatcttaa cgattcttag atgagcagtt cagtggtact tattattcac actctgctag
     1381 gcggtcaagc gcacagtccg tctctagccc tttctctgta accacttgtg gtgacatatg
     1441 aaatgccacc ccgtcccccc tgtgtttgaa tcgcttggtc cccagtttgt tcctgatttg
     1501 gagggctgtg gaatctttag atagtggatc cttgcctgag aagcgagtta ctgtcagcga
     1561 gcttctcccc cacttccttt tcactctcca ttcctgactg cagatgccac gtcagcagcc
     1621 gactgtctcc tgctgcccct ctgccttccc tgcgtgtggt gtgccttctg cctccctgaa
     1681 ctgtacacca ggacaagccc tttcctcctt aagttgcttt tgtcagggtg ccctgtcaca
     1741 ttaggaatga tggtaatgct tttgaaaact ccaagtccac aagaaatctg cctgcgtctg
     1801 caaacaaaca aaacccccca aaacccaact ttacaagact ccctctacct gccaataaac
     1861 ctggaacatt ttatacatga cagagccaag ccatactacg gcggatcaaa gcccaaggtg
     1921 gattgggaag gtcccatgca gacatgcaga cccctctctg agcaaagagg caggtcaatc
     1981 tcttgagatc taggacagcc tggtctacag agtgggttcc agggcagcca gggctacaca
     2041 gagaaaccat tatttcaaaa gggttaaaat aaaaaaaaag tgactcggat tcagaggaga
     2101 ggggagtcta acctttaaag gtctactagc accttcatcc ttagaagtgg ctgcctctgc
     2161 caggcaggtt ttttgtaaga ccttcagtgc aagctagagg catagctcca gtctgggaca
     2221 ggacagaaat aaaactttca tagtcaccta gtgaagctcc ttgggcattt ggtgagcaaa
     2281 aactctggga tagaaccaga ttggaaggtg tgcgctttca aaatgacctt ttgattatac
     2341 ctgctgggtt tggttactca agatactcac tgggtcttga gtcccttctg atttgcttct
     2401 gaatcgtctt accattcagt tctttatccg gtgtcctgat tttatcagtt tccccaccgt
     2461 cagtgttcag tgagaaggct gtccacgctc ccaagagtct agaatgtacg gcttgcttca
     2521 ttttccaacc aaaactgccc accaacttcc caggacgaag atggagaggt ggacatttca
     2581 gagtacccgt gggcaaccta actattcatc gccttgcagt caaggcagtg gttccctcca
     2641 gcaccctctg aggcacccca actgtgaagc attaccaagg gcatgaaaat gtacacactc
     2701 aagtttccgg caacccagcc ccacccgcag gctcacacat accaaaccca ccgtggcctt
     2761 ttgtcccacg aaggccggga gacaggtcca cctgtaaagc agcatggaaa cctgtgcttc
     2821 acgtagtcta attttcctcg agctgatttg atggggagac aggagcttct ccaagctcaa
     2881 cagcaatttg cattcggaga aactcagctg tcagggatgc ggtggctgag catttccgag
     2941 tgacacgagt gaacgcacca tgggagggct cggctccccg aggaagtggg ggatggttcc
     3001 agaagggaga ggagacaaaa ggtgcataca gaattctttt atttaactta attcatgtgg
     3061 tactttaact actagaaaaa agcagagtaa tagactcaag tggccttagc ttcagccatt
     3121 caaaatagac aaagtttctt tttttcataa tgtaaagagt cccgagtatg ttgccgcaac
     3181 aggaataaat tcttacaaca gaatatacaa aaacattgaa ttttttttca tctactgatt
     3241 tttttttata tataaacaga gggttttttt ttttttagga ataatttaca cacagaaagt
     3301 tattttatgt aacaaattgg ccatatttat cttttttaga cttttttttc ttttttaaga
     3361 aaaaatttaa caagaaaact cagaaatgca ttattgacga tgcatctgtt ccgtcccgct
     3421 ttctgatttg actttattta tttattattt tttaaaatcc cagaggtaga taagctctgg
     3481 caaagttctc acctcaacct cactggctta ggaagcagac aggggatgcc accggcaggc
     3541 acccgtgcct gggtactgtg tctgcacact gcctgaaatc cacaagaaac tgaaaaaacc
     3601 ataccaaacc caccgacggt tcctagacct ttctcctgta gtgttagaaa gttccagatg
     3661 ttctcaacaa cggtgtcttg tggaaccata gagacacggc caataatgca cagggagcca
     3721 aaggacatgg attttaattc taaaaaacag ggggggggga tgagggggca cacgctgtgg
     3781 tttttgttac cagtttgttc tgtattggtt aaaaaaaaaa tggaccttca gcgttcggca
     3841 ttaaatacag gtaggcacag ctttcattag ggcctgaggc acatgtgccc atggcctgca
     3901 caacagaatc atgtgaccac tgtgaagcct ctcaagtgtc ctgaaaccct cccatctcca
     3961 ccgtgttgca agactagaat cagccacacc agccagatgt caccagtgag tgccatctct
     4021 tgctgggtgg caacacaccc actacttcca tggccagcga gattcttggt tcgttctatc
     4081 tgtttaggcg gctatactcc accgggaaca gtaagtaaca gataattcca ttccccagca
     4141 cagggttcca agaccaagat actgaagaat tcagaagtac tttttaaacc actggcattc
     4201 cttttgtctt tttttttgtt ttgttttaat tttttttaaa aatttttatt ttttacaaac
     4261 tagagcagaa agcatatggg aaaggggcga accacaattt gggtcccggg gagaattttt
     4321 ttaattaatt aattttttaa aaatttttta ttttttattt ttggcatatt gtaaagctag
     4381 ctagtaaaca agtgtcaaaa aaaaaaacaa agaaaagaaa aagaaaaaag aaaacaaagg
     4441 gaaaaaaaaa gaccacaaac acatattttt ttgcacacgg agaggaaaaa aaggtgtttt
     4501 taaattattt cggcaattat aaactacaaa cattttataa aattattcta tgttcttaca
     4561 aaaatgcaat gaaacattta attagttctt gtaaaccaga tcttcgtcaa cgactacccg
     4621 taatctactg gacttagaag ccctattgga cacgataatg agtaatggaa agatgcggac
     4681 acaaatgtgg acacacaaat cagtgattat gaagctctca cagaaataag agaaatcaaa
     4741 tccctaacgt catgccccag actgaccact catctgatga gcgtgatggc gtccgagttc
     4801 ttcagcatgt ggcttagctc ttggagaagt ccccagagca ggatgccgag tttcttatct
     4861 gacaccaaaa gcccacagat gactccacag cctccgtgtg gtcctgacac cttcaggaac
     4921 catcaggtcc agatgtggtc catgcttctt ccaggccctt tacccctctg tcagcaattc
     4981 ctgtctcgtc atgatgccgg ttaccatagt ttcctactgc accctcaatc actctgccat
     5041 cccatcacag aatgttcgtc cctctaaatt gccaactggc catccaagtt ggagacccaa
     5101 agcaaagacc cctggcctgt ccaaggtctg taacttcagc atctctggca agaggggttc
     5161 aattttaaac aaacatcctg tcttgaagtt ctcatttgaa cctccaccta cttcaaagtg
     5221 gagtgataag atttgaccat cactggttct taaggagtga atctctctgg tccaggtttc
     5281 ccaatgcaac tgcttagccc aggaaatgaa aaggcatcag acagacataa aagtaacatt
     5341 aaaaacaaaa caaaagaatc caaaccgtaa attcattact gctaaaatgg gctgaagcac
     5401 tgggatgggg tggtcctgtc tcctgcagga tgccaatgtt taagaaggga gttgccttta
     5461 gcactgtgtg gccactctca agaggaccca acaacgacaa ctgaggacct tgggtaagca
     5521 tcccggactt ctcacccatg tgagctcagc gtgaccttgc cagcaccact tgcttgcctc
     5581 aggtacggcc attgccaaca taggtgggct cctaagggcc aggctccggg agctcagact
     5641 tacaactggc atcacacaga cagagctcat ctgtcaggcc ccctagaaac actcccgtgt
     5701 accactccgc catctgctca tcccacgatg atcacccttc tgttttatga agctgctttt
     5761 cccaccattg aattgtcccg agtcctaaag aaaacaggca ggcaggagag accagtgatg
     5821 gccttgaaca gtcttttata tctcaaggag gaagcctcat ccccaactat gaatccaatg
     5881 ttagggcatt cctgaaagga ggtgggggaa gcgtgggcct cgcacagctc aggttcgact
     5941 ccgcgattca ggaagggttg tgtgtgtgtg gggaacacct gaacacttgc gtcgcctgca
     6001 tgctgtgcct cagtggttcg tgttacttca agcagtgtga gctcctatca gaggaggggg
     6061 gtgcgtgaaa aaggccacaa ctcagcttgg aaagattact tgaagcacat aaggagaaaa
     6121 atcaggaaga ggcggggaac accagcgtga gatcaggcta gaactgtgga tatgatgcct
     6181 tgcaacggtc agggtgggtc gatccagcag gatgactgca ccctcacaca agctgacttt
     6241 ttcttttact gaagtatttt tggagcattt gctatgatgg acactacacc gttagtgccg
     6301 tctctctact taaagaaaaa aaaaaaaa
//
