LOCUS       XM_039094686            3063 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus
            protein-glucosylgalactosylhydroxylysine glucosidase (Pgghg),
            transcript variant X1, mRNA.
ACCESSION   XM_039094686
VERSION     XM_039094686.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3063
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3063
                     /gene="Pgghg"
                     /note="protein-glucosylgalactosylhydroxylysine
                     glucosidase; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 21 ESTs, 2 long SRA reads, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 227 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:309103"
                     /db_xref="RGD:1306015"
     CDS             174..2456
                     /gene="Pgghg"
                     /codon_start=1
                     /product="protein-glucosylgalactosylhydroxylysine
                     glucosidase isoform X1"
                     /protein_id="XP_038950614.1"
                     /db_xref="GeneID:309103"
                     /db_xref="RGD:1306015"
                     /translation="MDCSEDDPTRFSADCLPSDPRLWATVTNSYLGTRIYHDTIHING
                     VYNGAGGDTHRAILPSPLNVHLEAPAGTEQLTETFTLDTNTGSFLHTLESSSFRASQC
                     IYAHRVLPHVLVFSVSIARLTTGNEPITVPLRADFSPESPDLDLHVGPDFQGLRYLHG
                     HTLIPEHPGEPRPEVHMLWVPVPPALTLGEDEKDRTWEFVTVVGSSQAEAQGCYAEAL
                     QLQTRGVLYTIHADTWGQLWAGCGLDVAGPLALRQALRGSLYYLFSELPKPGTQGSTS
                     HGLSPGGLSNGSQEECYWGHIFWDQDLWMFPNILMFHPEAARAILEYRIRTLGGALKN
                     AQNLGYQGAKFAWESAGTGLEVCPEDIYGTQEIHINGAVVLAFQLYYYYTQDLQLFQE
                     DGGWDVVSSVAEFWCSRVEWSSQDKMYHLKGVMPPDEYHSGVNNSVYTNVLVQNSLHF
                     AAALAEDLGLPVPKQWLEVADRIKVPFDSEQNFHPEFDGYERGEEVKQADVVLLGYPV
                     PFPLRPDIRRKNLETYEAVTSPRGPAMTWSMFAVGWMELKDPSRAQVHLNRSFANVTE
                     PFKVWTENANGSGAVNFLTGMGGFLQAALFGCTGFRITAAGVTFDPLCPDLVSKVSVS
                     GVSYLGNKLNFAFSKDLVTLEVTARAEPGAPLLEAELWPSLARLTLSPEGLLSPYSWP
                     DTEVNLHSCPEIHLSFLIGVLTLEFFRYLWDTFVPSAASPIPQSFNLDPALTQQVYSV
                     FPLSLPLPTSSSHPLQSWAI"
ORIGIN      
        1 agagaccttg acagtttccc aggttccgct ggactcagcc ccgcccacct gccacgcggc
       61 ggggccactt cttcttcctc ccgccagggg cagctcgcac ccacagaact tccttacacc
      121 cgggcctggt tttggagagg gcagaggcca cctgaactgt gtgacaactt accatggact
      181 gctctgaaga tgatcccacc agattcagtg ccgactgttt gcccagtgac cccaggctct
      241 gggccactgt aacgaattca tacctaggta cacgtatata tcatgacacc atccatataa
      301 acggcgtgta caatggagct ggaggggaca ctcaccgggc aattctgccc agccccctca
      361 atgtccatct ggaagcccct gcaggaacag agcagctgac agagaccttt accctggaca
      421 ccaacacagg ttccttcctc cacaccctgg aaagctccag ctttcgggct tcgcaatgca
      481 tctatgctca ccgtgtatta ccccatgtac tggtcttcag tgtgtctatc gcacgcttga
      541 ccacagggaa cgagcccatc acagtgccgc tacgggcaga cttctctcca gaaagcccag
      601 acctggacct acatgtgggg cctgacttcc agggactccg gtacctgcat ggccacacac
      661 tcatccctga gcaccctgga gagccacggc cagaagtgca catgctatgg gtgccagttc
      721 ccccagcctt gacccttgga gaagatgaga aagacaggac ctgggagttt gtgaccgttg
      781 tgggcagcag ccaggctgaa gcccagggct gctatgctga ggccttacag ctgcagacta
      841 ggggtgttct gtatacaatc cacgcagaca cctggggcca gctctgggca ggctgtggcc
      901 tggatgtggc tgggcccctg gccctgcgcc aggcccttcg tgggtctctc tactacctgt
      961 tcagtgaact tcccaagccc ggcactcagg gatccaccag ccatgggctt agccctggag
     1021 gcctctccaa tgggagtcag gaggaatgct actggggcca tatcttctgg gatcaggacc
     1081 tctggatgtt cccaaatatt ttgatgttcc acccagaggc tgccagggcc atcctagagt
     1141 accgaatccg tacgttggga ggagctctga agaatgccca aaacctgggc taccagggag
     1201 ccaagtttgc ctgggagagt gcaggcactg gcctggaagt ttgcccggag gacatttatg
     1261 ggacccagga gatccacatc aatggggccg tggtgttggc ctttcagctg tactactatt
     1321 acactcagga cctgcagctc ttccaagagg atggtggctg ggatgtggtc agttctgtgg
     1381 ctgagttttg gtgcagccgt gtagaatgga gctcccagga caagatgtac cacttgaaag
     1441 gagtcatgcc ccctgatgag taccattcag gagtcaacaa ctccgtgtac accaatgtcc
     1501 tggtccagaa cagcctgcac tttgctgctg ctttggccga ggacttgggt ttgcctgtcc
     1561 ccaaacagtg gctggaggta gccgatagga tcaaggtacc atttgactct gagcagaact
     1621 tccaccctga gtttgatggc tatgagcgtg gagaagaagt gaagcaggca gatgttgtgc
     1681 tcctgggata cccagtcccc tttcccctga gacctgacat ccgaaggaaa aacttggaga
     1741 cttacgaggc tgtgacatcg ccccggggcc ctgccatgac ctggagcatg tttgctgtgg
     1801 gctggatgga actgaaggac ccctcaaggg ctcaggtcca cctgaacagg agtttcgcca
     1861 atgtcactga gcccttcaag gtgtggacgg agaatgcaaa tgggtccggt gcagtgaact
     1921 tcttaacagg catggggggc ttcctgcagg cagcactctt cgggtgcaca ggattcagga
     1981 tcactgcggc aggtgtgacc tttgaccccc tgtgtcccga cctggtctcc aaagtctctg
     2041 tctctggtgt ctcctacctg gggaacaagc tcaacttcgc cttttccaag gacttggtga
     2101 cacttgaggt cacagcccgt gcagagcccg gggcgcccct gcttgaagct gagctgtggc
     2161 cgtcgctggc ccggcttacc ctgtcaccag aaggtctcct ttccccatac agctggccgg
     2221 atacagaggt caacctccat agctgcccag aaattcatct gagtttccta ataggagttt
     2281 tgacattaga attctttcgg tacctctggg acactttcgt gccctcagct gcatccccaa
     2341 tcccacaatc tttcaatctg gatcctgccc tcacccagca agtttacagt gtgttccctc
     2401 tgtcccttcc cctccccact tcctcttctc accctctcca atcctgggct atctagagcc
     2461 tcatacatcc tttgctttga gctgacccta gcaccctacc ccttagcacc cccaccttcc
     2521 tgtctctcta ggccttaact tccttgttca cacctctggt ctctggaata ttctggtcaa
     2581 tgggctgggt ttccacccag catcaccagc aagtgagtga gtcatggagc caggggctta
     2641 gctacactaa ccaagagctt cctgtgacag ggagttggca ccaggtatgg ctagccaagt
     2701 gcttaagggc ttgtggcttt gaacttccta gtttctgatt tctcttcacg tcagatggta
     2761 tctagtgtag tgggctaggg taagaactgt ccctaaccac gcagcctgtg agcaggaagg
     2821 gagtgttatc agagaacaga gtagatgaac atcagactgg caaccagagg aactggagtt
     2881 acatggacag ggttccaggc cctagtcctg gccatcagtg ccgagaagca ggcttcactc
     2941 ctggttctta gtgtttctca gaacaaggtt catagcctag gaccataatc ctggtaaaaa
     3001 cctgtgcccc tataccaagc caacttggct aattaaagtc agtgctggca aaggctgaag
     3061 tca
//
