LOCUS       NM_001143895            2328 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus post-GPI attachment to proteins phospholipase 3
            (Pgap3), mRNA.
ACCESSION   NM_001143895 XM_001081396
VERSION     NM_001143895.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Hirata T, Mishra SK, Nakamura S, Saito K, Motooka D, Takada Y,
            Kanzawa N, Murakami Y, Maeda Y, Fujita M, Yamaguchi Y and Kinoshita
            T.
  TITLE     Identification of a Golgi GPI-N-acetylgalactosamine transferase
            with tandem transmembrane regions in the catalytic domain
  JOURNAL   Nat Commun 9 (1), 405 (2018)
   PUBMED   29374258
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Fujita M, Umemura M, Yoko-o T and Jigami Y.
  TITLE     PER1 is required for GPI-phospholipase A2 activity and involved in
            lipid remodeling of GPI-anchored proteins
  JOURNAL   Mol Biol Cell 17 (12), 5253-5264 (2006)
   PUBMED   17021251
REFERENCE   3  (bases 1 to 2328)
  AUTHORS   Florea L, Di Francesco V, Miller J, Turner R, Yao A, Harris M,
            Walenz B, Mobarry C, Merkulov GV, Charlab R, Dew I, Deng Z, Istrail
            S, Li P and Sutton G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
REFERENCE   4  (bases 1 to 2328)
  AUTHORS   Nezu M, Nishigaki M, Ishizuka T, Kuwahara Y, Tanabe C, Aoyagi K,
            Sakamoto H, Saito Y, Yoshida T, Sasaki H and Terada M.
  TITLE     Identification of the CAB2/hCOS16 gene required for the repair of
            DNA double-strand breaks on a core amplified region of the 17q12
            locus in breast and gastric cancers
  JOURNAL   Jpn J Cancer Res 93 (11), 1183-1186 (2002)
   PUBMED   12460457
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On Jan 22, 2009 this sequence version replaced XM_001081396.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC161914.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q31"
     gene            1..2328
                     /gene="Pgap3"
                     /gene_synonym="Perld1"
                     /note="post-GPI attachment to proteins phospholipase 3"
                     /db_xref="GeneID:688174"
                     /db_xref="RGD:1592386"
     exon            1..222
                     /gene="Pgap3"
                     /gene_synonym="Perld1"
                     /inference="alignment:Splign:2.1.0"
     CDS             42..1004
                     /gene="Pgap3"
                     /gene_synonym="Perld1"
                     /note="post-GPI attachment to proteins factor 3; per1-like
                     domain containing 1; post-GPI attachment to proteins 3"
                     /codon_start=1
                     /product="post-GPI attachment to proteins factor 3
                     precursor"
                     /protein_id="NP_001137367.1"
                     /db_xref="GeneID:688174"
                     /db_xref="RGD:1592386"
                     /translation="MARRTAPLLLLTLAVGLAGSSQGDREPVYRDCVLRCEERNCSGD
                     ALKHFRSRQPIYMSLAGWTCRDDCKYECMWLTVGLYLQEGYRVPQFHGKWPFSRFLFI
                     QEPASALASLLNGLASLVMLCRYRASVPASSPMYHTCMAFAWVSLNAWFWSTVFHTRD
                     TDLTEKMDYFCASAVILHSVYLCCVRTVGLQHPTVASAFGALLLLLLTGHISYLSLVH
                     FDYGYNMMANVAIGLVNLAWWLVWCLRNHRRLPHTRRCMVVVVLLQGLSLLELLDFPP
                     LFWVLDAHAIWHISTIPVHTLFFRFLEDDSLYLLKESEAMFKLD"
     exon            223..320
                     /gene="Pgap3"
                     /gene_synonym="Perld1"
                     /inference="alignment:Splign:2.1.0"
     exon            321..473
                     /gene="Pgap3"
                     /gene_synonym="Perld1"
                     /inference="alignment:Splign:2.1.0"
     exon            474..536
                     /gene="Pgap3"
                     /gene_synonym="Perld1"
                     /inference="alignment:Splign:2.1.0"
     exon            537..598
                     /gene="Pgap3"
                     /gene_synonym="Perld1"
                     /inference="alignment:Splign:2.1.0"
     exon            599..735
                     /gene="Pgap3"
                     /gene_synonym="Perld1"
                     /inference="alignment:Splign:2.1.0"
     exon            736..940
                     /gene="Pgap3"
                     /gene_synonym="Perld1"
                     /inference="alignment:Splign:2.1.0"
     exon            941..2328
                     /gene="Pgap3"
                     /gene_synonym="Perld1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tcttccaagc tcctccctca gcggccgggc agagtgacag gatggccagg cggacggcgc
       61 cgctgctgct gctaaccttg gcagtgggac tcgcagggag ttcccagggc gaccgcgagc
      121 cggtgtaccg cgactgcgtg ctgcggtgcg aggaacggaa ctgttcgggg gacgcactga
      181 agcacttccg ctcccgccag ccaatctaca tgagcctagc tggctggact tgtcgggacg
      241 actgcaagta tgagtgtatg tggctcactg ttggtctcta tcttcaggag ggctacagag
      301 tgcctcagtt ccatggcaag tggcccttct cccggttcct gttcatccaa gagccagctt
      361 ctgccctggc ctcgctcctc aatggcctgg ccagcctggt gatgctctgt cgctatcgcg
      421 cctccgtgcc agcctcctcc cccatgtacc acacctgcat ggccttcgct tgggtgtctc
      481 tcaatgcttg gttctggtcc acagtcttcc ataccaggga cactgacctc acagagaaga
      541 tggactactt ctgtgcttca gccgtcatcc tgcattctgt ttacctgtgc tgtgtcagga
      601 ccgtgggact gcagcacccg accgtggcca gtgccttcgg tgccctgctg ctgctgctgc
      661 tgacaggaca catctcctac ctgagccttg tccatttcga ctacggctac aatatgatgg
      721 ccaatgtggc tataggcctg gtgaatctgg cgtggtggct ggtctggtgc ctacggaacc
      781 accggcgcct acctcacacc cgcaggtgta tggtggtggt ggtgctgctg caggggctgt
      841 ccctgctgga gctgctcgac ttccctcccc tcttctgggt gctggatgct catgccatct
      901 ggcacatcag caccatcccc gtccacaccc tcttcttcag atttctggaa gacgacagcc
      961 tatacctact gaaggaatct gaagctatgt tcaagctgga ctagagaggc caggagggag
     1021 tggctctgcc tcatccccga ggcttttccc ttctccccct gagaggaatg gtttttctcc
     1081 ttttagcttc ttgaacttga ccatgtgagg tttggacctg aaagcctgta gctacctggc
     1141 cattgctggc cctcacgtgg aacctgtctt gggagctgct acctcatgtc tgggacaggg
     1201 aagaggcagc tatcccgtac ctggggctaa actgagaccg tgttttgagg tctacagaga
     1261 ggactgcttt tgtgtcctca acctccaccc ccctttccac ctcactcgtc cccatagcac
     1321 caccctgcgt acctccactt gcccccaaaa ccacacccgc aggcctttgg gtacactggg
     1381 atctcttttt gtcagggcac cactaggtgg cactggatgc ctgctcctca gctgcccaag
     1441 tttctctctg ggtctgagga actgggctgc tgcggggagg actaagggtt tctgccctgc
     1501 ctcctacaac ctgtaagtct cgacttcagg gccaggaccc tagaaagctc aggatgagaa
     1561 cccagtctgc tgttctggtt gggagtgggc acattgacac atagagggat atgggccaag
     1621 ccaggagcag gtgaccagat agtcagtgag ctggaggatt gtgggccttc acttagagtg
     1681 tacagcgtgg gtgtgtgttc agggggcggg tggtttgggg aaggtatgtg taagagacga
     1741 acatgcacgg aacacgctgg taggaggctg aagcagaaca gggggatcaa gtcatcatca
     1801 acagtcactt gagctccaag tcggccccag gccccaaggc catcctgctg ctagtatctg
     1861 cacatgactt tgggatgctg ggtgtgggtg tgggtgcctg cccgtgcccc tttgtacccc
     1921 acataaagca cacacctccc cccacatgtc ttgagagcac cttgagaact agcccctgga
     1981 aggcagagag aggggaagag tgccccgcct gctattcctt tatcttggga tggtggatct
     2041 cccacctcag ttccctacta tagaactttg tcagagccgg actctcccgg ggcaatctca
     2101 gggcaagcag aacccatcca gcctgcatcc tgcaccagcc ccgtcaggaa ggctgtctgc
     2161 ccctgccctc tgcccccctt tgtgggggag gacagccatg ccagggatct agctcaggta
     2221 cttgggcagc ctattagggt ttttggtttt gttgttttat actaaaaaca attttaaggc
     2281 cagaggcagg aaaggacaga cttaataaag taattcctgg cctcacgc
//
