LOCUS       NM_001106794             660 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus prefoldin subunit 5 (Pfdn5), mRNA.
ACCESSION   NM_001106794 XM_001067687 XM_217061
VERSION     NM_001106794.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Topalidou,I., Cattin-Ortola,J., Pappas,A.L., Cooper,K.,
            Merrihew,G.E., MacCoss,M.J. and Ailion,M.
  TITLE     The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo
            Sorting to Dense-Core Vesicles
  JOURNAL   PLoS Genet 12 (5), e1006074 (2016)
   PUBMED   27191843
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Won,J., Shi,L.Y., Hicks,W., Wang,J., Hurd,R., Naggert,J.K.,
            Chang,B. and Nishina,P.M.
  TITLE     Mouse model resources for vision research
  JOURNAL   J Ophthalmol 2011, 391384 (2011)
   PUBMED   21052544
REFERENCE   3  (bases 1 to 660)
  AUTHORS   Yoshida,T., Kitaura,H., Hagio,Y., Sato,T., Iguchi-Ariga,S.M. and
            Ariga,H.
  TITLE     Negative regulation of the Wnt signal by MM-1 through inhibiting
            expression of the wnt4 gene
  JOURNAL   Exp Cell Res 314 (6), 1217-1228 (2008)
   PUBMED   18281035
REFERENCE   4  (bases 1 to 660)
  AUTHORS   Farkas,R.H., Qian,J., Goldberg,J.L., Quigley,H.A. and Zack,D.J.
  TITLE     Gene expression profiling of purified rat retinal ganglion cells
  JOURNAL   Invest Ophthalmol Vis Sci 45 (8), 2503-2513 (2004)
   PUBMED   15277470
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CF976389.1, CF976393.1 and AI576681.1.
            
            On Jan 10, 2008 this sequence version replaced NM_001106794.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC169128.1, FM052073.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-144               CF976389.1         5-148
            145-356             CF976393.1         116-327
            357-660             AI576681.1         1-304               c
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="Sprague-Dawley"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q36"
     gene            1..660
                     /gene="Pfdn5"
                     /note="prefoldin subunit 5"
                     /db_xref="GeneID:300257"
                     /db_xref="RGD:1311436"
     exon            1..115
                     /gene="Pfdn5"
                     /inference="alignment:Splign:2.1.0"
     CDS             44..508
                     /gene="Pfdn5"
                     /note="prefoldin 5"
                     /codon_start=1
                     /product="prefoldin subunit 5"
                     /protein_id="NP_001100264.2"
                     /db_xref="GeneID:300257"
                     /db_xref="RGD:1311436"
                     /translation="MAQSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQTKYV
                     EAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKTAEDAKDF
                     FKRKIDFLTKQMEKIQPALQEKHAMKQAVVEMMSQKIQQLTALGATQATAKA"
     exon            116..218
                     /gene="Pfdn5"
                     /inference="alignment:Splign:2.1.0"
     exon            219..250
                     /gene="Pfdn5"
                     /inference="alignment:Splign:2.1.0"
     exon            251..325
                     /gene="Pfdn5"
                     /inference="alignment:Splign:2.1.0"
     exon            326..431
                     /gene="Pfdn5"
                     /inference="alignment:Splign:2.1.0"
     exon            432..646
                     /gene="Pfdn5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctcgcctag ccggcttccg cttcggcatt cctccttccc aacatggcgc agtcgattaa
       61 catcacggag ctgaatctgc cacaactgga aatgctcaag aaccagctgg accaggaagt
      121 ggagtttttg tccacgtcaa ttgctcagct caaggtggta cagactaagt atgtggaagc
      181 caaggactgt ctgaacgtgc tgaacaagag caacgaggga aaagaattac tggtcccact
      241 gacgagttct atgtatgtcc ccgggaagct ccacgatgtg gaacatgtgc ttatcgatgt
      301 gggaactggt tactacgtgg agaagacagc tgaggatgcc aaggacttct tcaaaaggaa
      361 gatagacttt cttaccaaac agatggagaa aatccagcca gctctgcagg agaagcatgc
      421 catgaaacaa gccgtcgtgg aaatgatgag ccagaagatt cagcagctca cagccctggg
      481 ggcaacgcag gccactgcca aggcatgaga atgtgtcgcg gaaacgaagc agagaaggac
      541 cctttttcaa ggggcctggg actttttttg gcagtggcct cctgggaaag tgtctgggaa
      601 gagagggtct tgtgtttaat gttaataaat gtgccagctg tgcaaaaaaa aaaaaaaaaa
//
