LOCUS       NM_001399460            1293 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus proline and glutamate rich with coiled coil 1
            (Percc1), mRNA.
ACCESSION   NM_001399460
VERSION     NM_001399460.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1293)
  AUTHORS   Oz-Levi,D., Olender,T., Bar-Joseph,I., Zhu,Y., Marek-Yagel,D.,
            Barozzi,I., Osterwalder,M., Alkelai,A., Ruzzo,E.K., Han,Y.,
            Vos,E.S.M., Reznik-Wolf,H., Hartman,C., Shamir,R., Weiss,B.,
            Shapiro,R., Pode-Shakked,B., Tatarskyy,P., Milgrom,R., Schvimer,M.,
            Barshack,I., Imai,D.M., Coleman-Derr,D., Dickel,D.E., Nord,A.S.,
            Afzal,V., van Bueren,K.L., Barnes,R.M., Black,B.L., Mayhew,C.N.,
            Kuhar,M.F., Pitstick,A., Tekman,M., Stanescu,H.C., Wells,J.M.,
            Kleta,R., de Laat,W., Goldstein,D.B., Pras,E., Visel,A., Lancet,D.,
            Anikster,Y. and Pennacchio,L.A.
  TITLE     Noncoding deletions reveal a gene that is critical for intestinal
            function
  JOURNAL   Nature 571 (7763), 107-111 (2019)
   PUBMED   31217582
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.1490862.1,
                                           SRR22582419.856115.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840105, SAMN12840109
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on single protein-coding
                                                transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                JAXUCZ010000010.1  14695068-14695138   c
            72-1293             JAXUCZ010000010.1  14692360-14693581   c
FEATURES             Location/Qualifiers
     source          1..1293
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1293
                     /gene="Percc1"
                     /note="proline and glutamate rich with coiled coil 1"
                     /db_xref="GeneID:103693290"
                     /db_xref="RGD:9344254"
     exon            1..71
                     /gene="Percc1"
                     /inference="alignment:Splign:2.1.0"
     exon            72..1293
                     /gene="Percc1"
                     /inference="alignment:Splign:2.1.0"
     CDS             111..935
                     /gene="Percc1"
                     /note="ryanodine receptor 1-like"
                     /codon_start=1
                     /product="protein PERCC1"
                     /protein_id="NP_001386389.1"
                     /db_xref="GeneID:103693290"
                     /db_xref="RGD:9344254"
                     /translation="MAAGVIRSVCGFRLPLPSHKSFLFTDLEATETSEEEEGEEEEEE
                     EEEEEEEEGDQDLQGEGSQGCSPDSQSSGVVPQGPSSPETPVQLLRFSELISGDIQRY
                     FGRKDTGQDPDAQDIYADSQAASCSARDLYYADLVCLAQDGPPEDEAAAELRMHSPGV
                     PEGQVHRLGHRGDRVPPLGPLAELFDYGLRQFSRPRVSACRRLRLERKYSHITPMTQR
                     KLPPSFWKEPVPNPLGLLHPGTPDFSDLLASWSAEGGSELQSGGTQVLEGTQLAEI"
ORIGIN      
        1 gagctcagct ataaatgctt gcgccccagg tggaggagag cctgctgaga gagccctgca
       61 gtcccagtca gctccagaga cccccccaaa attttgggga cctccacaag atggctgctg
      121 gagtgatacg atctgtctgt ggcttccggc tacccctacc atcacacaag tccttcctgt
      181 tcacagacct ggaggctaca gaaacttctg aagaggagga gggagaggaa gaagaggagg
      241 aagaagagga ggaggaagaa gaagagggag accaagacct gcaaggtgag gggtcacagg
      301 gctgcagccc agactctcag agctcaggag tggtccctca gggtcccagc agccctgaga
      361 ccccagtgca gctgctgcgc ttctcagagc tcatcagtgg tgacattcag cggtactttg
      421 gacgcaagga cacagggcaa gacccagatg cccaagacat ctatgctgat agccaagcag
      481 ccagctgttc tgcccgggat ctgtactatg ctgatctggt atgcctggcc caggatgggc
      541 ccccagagga tgaggcggcg gctgagctca ggatgcattc acctggggtg cctgagggtc
      601 aggtgcacag gctgggccac agaggagaca gggtgccacc actgggcccc ctggctgagc
      661 tctttgatta tggccttcgg cagttctcta ggcccagagt atcagcttgc cgaagactga
      721 ggctggagcg gaagtatagc cacattaccc ccatgaccca aagaaaattg cctccatcct
      781 tctggaagga gcctgtaccc aacccactag gcctactgca tccgggcaca ccagatttta
      841 gtgatctgct ggccagctgg tctgctgagg gtggctctga gctgcagagt ggaggcaccc
      901 aagttctgga ggggacacag ctggccgaga tctagtgagt aggtgagtca ggagtgtgct
      961 ggggcagcaa tggccttttc taccttcaga acaaccaagc acctccttct gtagcacagg
     1021 tcctgcccta cctagtaggt ctatctaagt agtcatgcag ttacctctcc ctcaagagga
     1081 gaacaggccc aagaggattt gaacttatcc caagtgtctg gaactgttgc caccagcact
     1141 gaaaaagaca gagagacagg gagacagaga gagacagaga cagagacaca gagagacaga
     1201 gagagaagag agagacagag agagtcagag agagacagag catgtaagct tacccagacc
     1261 tgccacacct gactaccagc tctccgggga ccc
//
