LOCUS       NM_001113752            1677 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus plasmanylethanolamine desaturase 1 (Peds1), mRNA.
ACCESSION   NM_001113752 XM_001073663 XM_342588
VERSION     NM_001113752.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1677)
  AUTHORS   Gallego-Garcia,A., Monera-Girona,A.J., Pajares-Martinez,E.,
            Bastida-Martinez,E., Perez-Castano,R., Iniesta,A.A., Fontes,M.,
            Padmanabhan,S. and Elias-Arnanz,M.
  TITLE     A bacterial light response reveals an orphan desaturase for human
            plasmalogen synthesis
  JOURNAL   Science 366 (6461), 128-132 (2019)
   PUBMED   31604315
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC158660.1.
            
            On or before Jan 26, 2008 this sequence version replaced
            XM_342588.3, XM_001073663.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158660.1, CO400903.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1677
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q42"
     gene            1..1677
                     /gene="Peds1"
                     /gene_synonym="Kua; Tmem189"
                     /note="plasmanylethanolamine desaturase 1"
                     /db_xref="GeneID:362278"
                     /db_xref="RGD:1309093"
     exon            1..140
                     /gene="Peds1"
                     /gene_synonym="Kua; Tmem189"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..832
                     /gene="Peds1"
                     /gene_synonym="Kua; Tmem189"
                     /EC_number="1.14.19.77"
                     /note="Kua homolog; transmembrane protein 189"
                     /codon_start=1
                     /product="plasmanylethanolamine desaturase 1"
                     /protein_id="NP_001107224.1"
                     /db_xref="GeneID:362278"
                     /db_xref="RGD:1309093"
                     /translation="MAGAEDSPGRQPELDEDETAECRRWGAQHAGARELAALYSPGKR
                     LQEWCSVILCFSLIAHNSVHLLLLARWEHTPLVILGVVAGALVADFLSGLVHWGADTW
                     GSVDLPIVGKAFIRPFREHHIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFQTQSP
                     ETLEQLYPWECFVFCLIIFGTFTNQIHKWSHTYLGLPCWVTVLQDWHVILPRKHHRIH
                     HVAPHETYFCITTGWLNYPLEVIGFWRRLEDVIQSLTGEKPRADDMKWAQKIK"
     exon            141..260
                     /gene="Peds1"
                     /gene_synonym="Kua; Tmem189"
                     /inference="alignment:Splign:2.1.0"
     exon            261..352
                     /gene="Peds1"
                     /gene_synonym="Kua; Tmem189"
                     /inference="alignment:Splign:2.1.0"
     exon            353..497
                     /gene="Peds1"
                     /gene_synonym="Kua; Tmem189"
                     /inference="alignment:Splign:2.1.0"
     exon            498..710
                     /gene="Peds1"
                     /gene_synonym="Kua; Tmem189"
                     /inference="alignment:Splign:2.1.0"
     exon            711..1650
                     /gene="Peds1"
                     /gene_synonym="Kua; Tmem189"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggccgggcga cgggccatgg cgggcgccga ggactcgccg ggccggcagc cggagctgga
       61 cgaggacgag acggcggaat gccggcgctg gggcgcacag catgccggag cccgtgagct
      121 ggcggcgctc tactcgccag gcaagcgcct ccaggagtgg tgttccgtga tcctgtgctt
      181 cagtctcatc gcccacaact cggtccacct cctgctgctg gcccgctggg aacacacacc
      241 cctcgtcatc ctgggtgtcg ttgcaggagc tctcgtcgct gacttcctgt ctggcctggt
      301 acattggggt gctgatacgt ggggctctgt ggacctgccc attgttggga aggccttcat
      361 ccggccattc cgggagcacc acattgaccc cacagccatc acaaggcacg acttcatcga
      421 gaccaatggt gacaactgcc tggtaacact gctgccactg ttaaacatgg cctacaagtt
      481 ccagacccag agcccagaga ccctggagca gctgtacccc tgggaatgct tcgtcttctg
      541 cctgatcatc tttggcacct tcaccaatca gatccacaag tggtcgcaca cgtacttagg
      601 gctgccatgc tgggtcaccg tcctgcagga ctggcacgtg atcctgccac ggaaacacca
      661 tcgcattcac catgtggcac cccatgaaac atacttctgt atcaccacag gttggctcaa
      721 ctacccccta gaggtgatag gcttctggcg gcgcctggag gacgtcatcc aaagcctgac
      781 cggtgagaag ccgagggcgg acgacatgaa atgggcccag aagatcaagt agcatgcccg
      841 cctcctggtc gccaaccttc cccaacctga actgaagcca tctgccaaat cccggcgtct
      901 ctgagctact gctccagtga agagaagtcc cctgggctgg gcccgggcac ccctagccca
      961 cccccagtga cacagaatac ttgagcctcc gagttttcat ttcctcttct ccttttcttt
     1021 ccttggacct ttctggccac tgagctgctc caaggccaag cctgactgca gaggggagcc
     1081 cagttccact ggtcagcccc gtcctgatgc tctgcacgcc tgctccctag tgtagggtca
     1141 ctgacacacg tggtgtgtct cagtgatcca gagagccccc agaacactta aatgtcccca
     1201 gatcatgatc ctcccttagc cctgcaaacc gaccccagag gtctaagtag atgggccacc
     1261 ccagctgcca cccaagggca gcagagttag gcaagggtca gggcagctgg taaggagagg
     1321 ccagaatgtc ctgcccacac gcggatgctc ccttcccttc cccagttctt ctgtccacgt
     1381 gtccagccac atctgaggtc tccctgtgga gacatcttca tgggcgcagc tcttatgaag
     1441 ggcttggtca cttgtcattt ggggagggga cactgtgtcc cttctggcca gtgtgtcaga
     1501 ggaggaagaa taaggccttt ttatttggat ttttttttta aaggtgcttg cttgtcaatg
     1561 taaataacag aaagccttaa tatctttctg taacatggag taatatttta atgtcatgtt
     1621 ttggatgtat ataatatatt tataacaaag aaaaaaaaaa aaaaaaaaaa aaaaaaa
//
