LOCUS       NM_001108107            3368 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus PDZ domain containing RING finger 4 (Pdzrn4),
            mRNA.
ACCESSION   NM_001108107 XM_001057467 XM_235598
VERSION     NM_001108107.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3368)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000007.1.
            
            On Sep 3, 2009 this sequence version replaced NM_001108107.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.2424600.1,
                                           SRR26360194.2200348.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMN12840105
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-311               JAXUCZ010000007.1  125696448-125696758
            312-568             JAXUCZ010000007.1  125771945-125772201
            569-671             JAXUCZ010000007.1  125775497-125775599
            672-770             JAXUCZ010000007.1  125817983-125818081
            771-833             JAXUCZ010000007.1  125821023-125821085
            834-935             JAXUCZ010000007.1  125827763-125827864
            936-1052            JAXUCZ010000007.1  125832878-125832994
            1053-3368           JAXUCZ010000007.1  125842650-125844965
FEATURES             Location/Qualifiers
     source          1..3368
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q35"
     gene            1..3368
                     /gene="Pdzrn4"
                     /note="PDZ domain containing RING finger 4"
                     /db_xref="GeneID:315250"
                     /db_xref="RGD:1308860"
     exon            1..311
                     /gene="Pdzrn4"
                     /inference="alignment:Splign:2.1.0"
     CDS             243..2570
                     /gene="Pdzrn4"
                     /codon_start=1
                     /product="PDZ domain-containing RING finger protein 4"
                     /protein_id="NP_001101577.2"
                     /db_xref="GeneID:315250"
                     /db_xref="RGD:1308860"
                     /translation="MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKATHEEAVEAFRTA
                     KEPIVVQVLRRTPLSRPPYGMAPEVQLMNASTQTDITFEHIMALAKLRPLTPPVPDTC
                     PFLLSDSCHSLHPMERAFYEDHEYVSSLPADADRAEDFEYEEVELCRVSSQEKLGLTV
                     CYRTDDEEDTGIYVSEVDPNSIAAKDGRIREGDRILQINGEDIQNREEAVALLSSDEC
                     KRIVLLIARPDLQLDEGWLEDERNEFLEELNSEMLEEERNEGAQCTANELQQPKKQEE
                     EEGTTDTATSSSNNQEKDSGVGRTDESLRNDESSEQENVVEEPHSTALKSKRELGQSQ
                     DTLGSIELQCNQSCAGGECLDSDCASNQEVCEGFQQLLELKIRNHGDYDLYYSSSTLE
                     CNQGEQDGVEHELKLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWALHDGGFRNYN
                     TSLDMQRGKLDDIIEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRMINLTNK
                     KNLRSMMTAHQSPSRPSTREYTATKVKTTHEGCSVESLEKSLENSQLLDQEHTVSEHT
                     PYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESPRGSEP
                     KMEWKVKIRSDGTRYITKRPVRDRLLKERALKIKEERSGMTTDDDTMSEMKMGRYWSK
                     EERKQHLVRAKEQRRRREFMMRSRLESLKESPQSSGEGKKELSIIELSHKKMMKKRNK
                     KILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV"
     exon            312..568
                     /gene="Pdzrn4"
                     /inference="alignment:Splign:2.1.0"
     exon            569..671
                     /gene="Pdzrn4"
                     /inference="alignment:Splign:2.1.0"
     exon            672..770
                     /gene="Pdzrn4"
                     /inference="alignment:Splign:2.1.0"
     exon            771..833
                     /gene="Pdzrn4"
                     /inference="alignment:Splign:2.1.0"
     exon            834..935
                     /gene="Pdzrn4"
                     /inference="alignment:Splign:2.1.0"
     exon            936..1052
                     /gene="Pdzrn4"
                     /inference="alignment:Splign:2.1.0"
     exon            1053..3368
                     /gene="Pdzrn4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agggggagtg ttgccatgaa ctgactggaa actctgtgtg tatcgttgag tgcaagatac
       61 ttcggaacgc ggagagcatg caccctggct tctgctctcc gctaccagcg gtgtgtctgt
      121 ttctggatcc aagtgactga tgacaaacag tcctcaagtc tggagggaga ttccctttca
      181 gctcacttgc ctttcagttc tggggaaact agaagatttg tgctctctct ctgcttccta
      241 gaatgggctg caacttgtgc acttttcaga aaagagagga acactacaaa ctgctgtacg
      301 aagtttccca ggtcaatggc aaggatctct cgaaggccac ccatgaagag gcagtggaag
      361 ctttccgaac cgccaaggag cccatagtgg tacaggtgtt aaggcggact cccctcagcc
      421 gaccaccata cggcatggcc ccggaagtac agctcatgaa tgccagcaca cagacagaca
      481 tcacttttga acacattatg gccctggcaa agcttcgacc actcacccct ccggtgccag
      541 acacctgtcc gtttttgctt tcagacagct gtcattccct gcatccgatg gagcgtgcat
      601 tttatgaaga ccatgagtac gtttccagct tgcccgctga tgcagacaga gcagaagact
      661 ttgaatacga ggaagtcgag ttgtgtcgtg ttagcagtca agagaagctg ggcctgacag
      721 tctgctaccg aaccgatgat gaagaagaca caggcattta tgtcagcgag gttgacccaa
      781 atagcattgc tgccaaggat ggtcgcattc gagaagggga tcgtatttta caaataaacg
      841 gggaagacat ccagaaccgg gaagaggccg tggctctgct ctcgagtgat gagtgtaaga
      901 gaattgtgct gctcatcgcc aggcccgatt tgcagctgga tgaaggctgg ctggaagatg
      961 aaaggaacga attcttagag gagttaaact cagagatgct ggaggaagag cgtaatgaag
     1021 gagcgcagtg cacagccaat gagctgcagc agccaaaaaa gcaggaggaa gaagaaggca
     1081 caacagacac ggccacatcc tcgtccaaca accaggagaa ggacagtggc gtggggcgca
     1141 cagatgagag cttgcgaaat gatgagagct cagagcagga gaatgtggtc gaggagcccc
     1201 acagcacagc actgaagagc aagagagagc tggggcagag ccaagacacc ctaggaagca
     1261 ttgagcttca gtgcaaccag agctgcgctg ggggtgagtg tttggactcc gactgtgcca
     1321 gcaaccagga ggtgtgtgaa ggattccagc agctattgga gcttaagatc cgaaaccatg
     1381 gagattatga cctgtactac tcaagcagta cgctcgaatg caatcaaggg gagcaggacg
     1441 gggtggagca tgaactgaag ctgttaaatg aggagctacg aaacattgag ctggagtgtc
     1501 agaatatcat gcaggcccac aggctccaga aagtgacgga ccaatacgga gacatctggg
     1561 cattgcatga tggaggattc cgaaattaca acaccagcct agatatgcaa agagggaaac
     1621 tggacgacat catagagcat ccggaaaagt cagacaagga cagctcaagt gcatacaata
     1681 cagctgagag ctgcagaagc accccactga ctgtagacag gtccccggac agttcccttc
     1741 caagaatgat caacctcacc aataagaaaa atctgaggag catgatgaca gcccatcagt
     1801 ccccttccag accgagcacc agggaataca ccgctaccaa agtcaaaacc acccatgaag
     1861 gttgcagcgt cgaaagcctg gagaagagtc tagaaaacag ccagcttctg gatcaggagc
     1921 acacagtcag tgagcatact ccatacctct ctccttacca cagctcctcc tacagatatg
     1981 ccaacattcc ggcgcatgcc cggcactatc aaagctacat gcagctaatt caacagaaat
     2041 ctgccgtaga gtatgcccag agtcagctca gcctggtgag catgtgcaag gaatcgccga
     2101 ggggctcaga gcccaagatg gaatggaagg taaaaattag aagtgatggg acccggtaca
     2161 taaccaagag gccagtgcga gaccgacttc tgaaggaacg tgccttaaag atcaaggagg
     2221 agcggagcgg catgaccaca gatgacgaca ccatgagtga gatgaaaatg gggcgctact
     2281 ggagcaagga ggagagaaag caacacctgg tccgggccaa ggagcaaagg cggcgccggg
     2341 agttcatgat gcggagtcgg ctggagagcc tcaaggagag cccacagagc agcggcgagg
     2401 gcaagaagga gctgagcatc attgaactga gccacaagaa gatgatgaag aaaagaaaca
     2461 agaaaatttt ggataactgg atgacaatcc aagaactgat gacccatggg gccaaatccc
     2521 cggatggcac aagggtccac aatgcctttc tgtcagtgac caccgtatga ccagacacat
     2581 ggggacaact ggcttagaga gcatgctacc agtttcggta gagtatcatt gcctcgttca
     2641 atgtggcatt tttatatata ttttgtgact ttacagttta aattttttgt aagcaaaaat
     2701 acctggtact ttttaatttg tttttcatat gctggtacct tctttggcta atatctttcc
     2761 ttaacttgtg atatattcat agcacacatt tatagaaaaa aaataaaacg atgaaaaaac
     2821 aaaaggaaag aaaaaaagat gaacaaaaat actaaggacc taattaattt cctattttaa
     2881 tgtatctatt gtaagtttta aaaaagtctg gatttatttc tctaattttc ttatttccta
     2941 ttttaataat tcaatgccaa aacatgtcta tgcttacctc ctggcatagt gtatgctaaa
     3001 tcagatctgc taataaacta catgccgtat cttgtcttat acatgaagta gcacctcttt
     3061 caacatcctt ctgtacattt aaacacataa atggcaatcg tctttgtctc agtaaagtgt
     3121 gggtggacaa tcttcccgtg atatgtagtg acactggtca tgtagctaga taattgtggt
     3181 aatttgtgac aataaaaaaa taataaatta ttgattatcc taagaaaagt taaccaagga
     3241 ctgttatttt ctttgcccac ggtggttgac atgtttggtt gtatgtatac gattagaaga
     3301 ctcttgattg tgaattacaa actgtgcagc ttttctatca ccttttctct ttcaataaag
     3361 ttgttttg
//
