LOCUS       NM_001024777            2329 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus PDZ domain containing 9 (Pdzd9), transcript
            variant 2, mRNA.
ACCESSION   NM_001024777 XM_219288
VERSION     NM_001024777.3
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2329)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Oct 13, 2022 this sequence version replaced NM_001024777.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: partial sample support SAMEA5760383, SAMEA5760389
                              [ECO:0000350]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-80                JAXUCZ010000001.1  184642102-184642181 c
            81-245              JAXUCZ010000001.1  184640365-184640529 c
            246-325             JAXUCZ010000001.1  184639203-184639282 c
            326-467             JAXUCZ010000001.1  184636703-184636844 c
            468-657             JAXUCZ010000001.1  184635163-184635352 c
            658-2329            JAXUCZ010000001.1  184628944-184630615 c
FEATURES             Location/Qualifiers
     source          1..2329
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..2329
                     /gene="Pdzd9"
                     /gene_synonym="LRRGT00105"
                     /note="PDZ domain containing 9"
                     /db_xref="GeneID:308954"
                     /db_xref="RGD:1560558"
     exon            1..80
                     /gene="Pdzd9"
                     /gene_synonym="LRRGT00105"
                     /inference="alignment:Splign:2.1.0"
     CDS             50..1051
                     /gene="Pdzd9"
                     /gene_synonym="LRRGT00105"
                     /note="isoform 2 is encoded by transcript variant 2; PDZ
                     domain-containing protein 9"
                     /codon_start=1
                     /product="PDZ domain-containing protein 9 isoform 2"
                     /protein_id="NP_001019948.3"
                     /db_xref="GeneID:308954"
                     /db_xref="RGD:1560558"
                     /translation="MEKDSSKSKNEKEYNHRASLNKMIHTKLTVGSLGLGLVIIQNGP
                     YLQISHLINKGAAASDGILQPAVFEQCVYGRHMALEGESMTARDAGQQCVGMEVTGGS
                     WLLHAQTVQYRNEDTTDTEGTTDTEKLGLVAVLTLLEGDVLISVGHANVLGYTLREFL
                     KLLQNITIGTVLQIKAYRGFIEIPQEWKDVYDLIPETKFPIPHTPKKTEQAKQSFESD
                     EHEDTVLDHRLKYYRYPRSVWNHPVRIPLSISTEWHGYKKKDNTISVGKDVKSDVVIH
                     KDDEKELRAPSPYWAMVEQDERISSSSSPASSISDAFWLEDFAQDKEGKGEQVSKFG"
     exon            81..245
                     /gene="Pdzd9"
                     /gene_synonym="LRRGT00105"
                     /inference="alignment:Splign:2.1.0"
     exon            246..325
                     /gene="Pdzd9"
                     /gene_synonym="LRRGT00105"
                     /inference="alignment:Splign:2.1.0"
     exon            326..467
                     /gene="Pdzd9"
                     /gene_synonym="LRRGT00105"
                     /inference="alignment:Splign:2.1.0"
     exon            468..657
                     /gene="Pdzd9"
                     /gene_synonym="LRRGT00105"
                     /inference="alignment:Splign:2.1.0"
     exon            658..2329
                     /gene="Pdzd9"
                     /gene_synonym="LRRGT00105"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agattccaac ctaggctttg ggaggatcaa gagagccctg ttctgagcaa tggagaagga
       61 ctcctccaaa agcaaaaacg aaaaagaata caaccacagg gccagcctga acaaaatgat
      121 tcacaccaaa ctcactgtgg gcagcctggg actgggcctg gtcatcattc agaacgggcc
      181 ctacctccag attagccacc tcatcaataa aggagctgca gccagtgatg gaatactcca
      241 gccagctgtc tttgaacaat gtgtgtatgg aagacatatg gctctagagg gagagtccat
      301 gacggcacgg gatgcagggc agcagtgtgt tggaatggag gtcactgggg gctcttggct
      361 tttacatgca cagacggtgc aatacaggaa tgaagatact acagatactg agggaaccac
      421 agacacagag aagctgggac tggtggctgt actcactttg ttggagggtg atgttctgat
      481 tagtgttgga catgccaatg tgttaggata taccctccgt gaatttttaa agcttttgca
      541 aaatatcacc ataggaacag tgctacaaat caaggcttat cgaggcttta ttgaaatacc
      601 ccaggaatgg aaagacgtat atgatttaat ccctgagacc aaatttccaa tcccacatac
      661 accaaagaaa acagagcagg ccaaacagtc ttttgaaagc gatgagcatg aagatacagt
      721 tttagatcac agactgaagt attacaggta tcctcggtca gtgtggaatc accctgtacg
      781 aataccgctg tcgatctcca cagaatggca tgggtataag aagaaggaca atactattag
      841 tgttggcaaa gacgttaaga gcgacgtagt aattcacaag gacgacgaga aagaactgag
      901 ggcaccttct ccatactggg caatggtgga gcaagatgaa cgcatctcct cctcctcctc
      961 ccccgcttcc tccatctctg atgccttttg gctggaggat tttgcacagg acaaggaggg
     1021 caaaggtgaa caggtgtcaa agtttggtta ggtattggtt tgcaaatttg tagccataga
     1081 acttcttatt tttaaacatc caatttttat gtcttaccat ggtgttgatt tgtgtacttc
     1141 ctacacgact taccagccct ccctcccatg actacagaaa cgccttcttc cttacttccc
     1201 tgtggtctaa taggctccac agacctgctc tcagagccac catcatttgc tcagctgtta
     1261 caacgccact agaggaacct gcccaatcat cagaatggcg gacatttgcc ttgtatggta
     1321 cagttttcct tgaggttttg gactggttgt ttacattaca gccccgccca caccctctca
     1381 gtgatacctt tacctggaaa gtcaggactg aaacaagcca ggaagatagg agaaggagtc
     1441 agacacaaaa gaaaccagat gagaggactt tccttagaaa tgtactttta ctgtaaacgg
     1501 ggcaaaatcc agactgttca attgttatta tcccaaactg agcaagtttt aaagttgttt
     1561 ttattttaaa aagccatcag taataatctg gaatttttta cttttaaagc tgcttagcct
     1621 caattttaac agattctgaa atttcttaat tgatgtaatt agtgaactta attactctat
     1681 tactgttttc tttaaagcat ttaataaata cctgttgact gcctaggaag agtacaagaa
     1741 aaacatttac atacaatgtt ttattggctc tatggcagct aggaggacta tacttttaag
     1801 tttttttctt cattgagaaa aatgttgaat taacattaat aattaggaaa cctgactctg
     1861 atgtgtttgc tggtctgggc tgagacttgg atacatgcat ctgttataac tcgtcaagaa
     1921 aaggcgtatg tcccaagttt ccacttgctg tcattgactt cttgccagaa acaaactttt
     1981 tcgcagcctt aaataaaaca cagagagtta aatgtcatca ccaagtagat aaaccatgta
     2041 ccttgagttt gtggaccaga cattctaggg cagcaactct gtaacacagc ctcctaagac
     2101 gattaaccgt gagacagtgt tttattctga aggtgtacag catcacatgt gcagctaagc
     2161 aaacagaagg tctctagatg agtacagtct tgaagaaaaa ccccaccgac actcaaaacc
     2221 acgaagaatg gctactggta ggctgcacgt tggtattgta atggtaaaaa ggcatgaatt
     2281 aatcaagata ctgtcgttat tcacattaaa gcagacttat gtaatcgaa
//
