LOCUS       NM_001414724            3965 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus PDZ domain containing 4 (Pdzd4), transcript
            variant 1, mRNA.
ACCESSION   NM_001414724 XM_006229562
VERSION     NM_001414724.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3965)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Dec 8, 2022 this sequence version replaced XM_006229562.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1633696.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-655               JAXUCZ010000021.1  156711377-156712031 c
            656-909             JAXUCZ010000021.1  156688183-156688436 c
            910-1000            JAXUCZ010000021.1  156687136-156687226 c
            1001-1099           JAXUCZ010000021.1  156686580-156686678 c
            1100-1162           JAXUCZ010000021.1  156685221-156685283 c
            1163-1264           JAXUCZ010000021.1  156684759-156684860 c
            1265-1375           JAXUCZ010000021.1  156684481-156684591 c
            1376-3965           JAXUCZ010000021.1  156681717-156684306 c
FEATURES             Location/Qualifiers
     source          1..3965
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq37"
     gene            1..3965
                     /gene="Pdzd4"
                     /gene_synonym="RGD1561214"
                     /note="PDZ domain containing 4"
                     /db_xref="GeneID:293856"
                     /db_xref="RGD:1561214"
     exon            1..655
                     /gene="Pdzd4"
                     /gene_synonym="RGD1561214"
                     /inference="alignment:Splign:2.1.0"
     CDS             596..2914
                     /gene="Pdzd4"
                     /gene_synonym="RGD1561214"
                     /note="isoform 1 is encoded by transcript variant 1; PDZ
                     domain-containing protein 4"
                     /codon_start=1
                     /product="PDZ domain-containing protein 4 isoform 1"
                     /protein_id="NP_001401653.1"
                     /db_xref="GeneID:293856"
                     /db_xref="RGD:1561214"
                     /translation="MGCNMCVVQKPEEQYKVMLQVNGKELSKLSQEQTLEALRASKEP
                     LVIQVLRRSPRLRGDSSCHDLQLVDSGTQTDITFEHIMALGKLRPPTPPMGILEPYVL
                     SELPPISHEYYDPAEFMEGGPQEAERMDELEYEEVELCKNSHQDKLGLMVCYRTDDEE
                     DLGIYVGEVNPNSIAAKDGRIREGDRIIQINGMDVQNREEAVAILSQEENTNISLLVA
                     RPESQLAKRWKDSDRDDFLDDFGSENEGDLRTRKLKSPPVQQTGNDEKGAPDGGPGLS
                     NSQDLDSGVGRTDESTRNEESSEHDLLGDEPPSTTNTPGSLRKFGLQGDALQSRDFHF
                     SMDSLLAEGAGLGGADLPGLTDEEYERYRELLEIKCHLENGNQLGILFSRASSGNSAL
                     DVNRNESLGHEMAMLEEELRHLEFKCRNILRAQKMQQLRERCMKAWLLEEESLYDLAA
                     SEPKKHELSDISELPEKSDKDSTSAYNTGESCRSTPLLVEPLPESPLKRSAAGNSNLN
                     RTPSGPPVTTHLKAAPSPGSPAKFRSLSRDPEVGRRQHTEERVRRSTKTSVTLERVGP
                     EGSPYLSRRHRGQEIEQYHSCVQLAPPRTLEDLSHGSLSLASGSRVGGVVAAAVEAPR
                     MEWKVKVRSDGTRYVAKRPVRDRLLKARALKIREERSGMTTDDDAVSEMKMGRYWSKE
                     ERKQHLIRAREQRKRREFMMQSRLECLREQQNGDSKPELNIIALSHRKTMKKRNKKIL
                     DNWITIQEMLAHGARSADGKRIYNPLLSVTTV"
     exon            656..909
                     /gene="Pdzd4"
                     /gene_synonym="RGD1561214"
                     /inference="alignment:Splign:2.1.0"
     exon            910..1000
                     /gene="Pdzd4"
                     /gene_synonym="RGD1561214"
                     /inference="alignment:Splign:2.1.0"
     exon            1001..1099
                     /gene="Pdzd4"
                     /gene_synonym="RGD1561214"
                     /inference="alignment:Splign:2.1.0"
     exon            1100..1162
                     /gene="Pdzd4"
                     /gene_synonym="RGD1561214"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1264
                     /gene="Pdzd4"
                     /gene_synonym="RGD1561214"
                     /inference="alignment:Splign:2.1.0"
     exon            1265..1375
                     /gene="Pdzd4"
                     /gene_synonym="RGD1561214"
                     /inference="alignment:Splign:2.1.0"
     exon            1376..3965
                     /gene="Pdzd4"
                     /gene_synonym="RGD1561214"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agagacaagc gaccggctgt gggccaggct cagagagcgc cgtgagctag agaagcggga
       61 ccctgcgagg ctacagctgg cgcgggcctg gccgcctctc catcggcggg ccgggccgcg
      121 tcgccaagcc cggaggctgg actccctggg ctgatagcca tgggcgggag ccggagacgg
      181 ctgcggcaaa ggcagcggca gcggccggtc ccgcgggcgg ggagccgtgt ggcccacggc
      241 ccctgacagt ccctgaccgc cccggcgggc aagcgcgctc ccgcgcctcc tggggtgggg
      301 gggggccgta gccaggcaac gcccggcgcg cccgcccatc ccccgccgcc cttttttccc
      361 ctggctgggt gcgcaggagc atgcctgtgt ctggcctcgg ccagcaaaga gttaagtcga
      421 gaggcgtgga gctgccttcc tcttgggggc gtgcccccct cccccgctag gcggctcggc
      481 cccccgcggt agggtatggc cccgggccca agcccgggac ccgtggtccc acgcgctgac
      541 cagtgaaaga ctccttcctc ttcccgctct cctctttccc tcgccggcca gcaccatggg
      601 atgtaatatg tgcgtggtcc agaaaccgga ggagcaatac aaagtgatgc ttcaggtgaa
      661 cgggaaggag ctctccaagc tgtctcagga gcaaacccta gaggccctgc gtgcctccaa
      721 ggagcccctg gtgatccagg tgctaagacg cagcccccgt ctgcgggggg acagctcctg
      781 ccatgacctt cagctggtgg acagtggcac tcagaccgac atcaccttcg agcatatcat
      841 ggcgctgggc aagctgcgcc cgcccacccc acccatgggc atcttggagc cgtacgtcct
      901 ctctgagctc ccccccatca gccatgagta ttatgaccca gcggagttca tggagggcgg
      961 cccgcaggag gcagagcgaa tggacgagct ggagtacgag gaggtggagc tgtgtaaaaa
     1021 cagccaccaa gacaagctgg gcctgatggt atgctatcgc acagatgatg aggaggacct
     1081 aggcatctac gttggagagg taaatcccaa cagcattgca gccaaagatg gccggatccg
     1141 tgagggagac agaatcatcc agattaatgg aatggatgtc caaaaccgag aagaggcagt
     1201 agccatcctg agccaggagg agaacaccaa catctccctg ctggtggccc ggcctgagag
     1261 ccagctagca aagcggtgga aagacagtga cagagatgac ttcctagatg actttggatc
     1321 tgagaatgaa ggggaccttc gtacccggaa gctaaagtcc ccccctgtcc agcagactgg
     1381 aaatgatgag aagggggctc ctgatggggg ccctggcttg agcaacagcc aggacctgga
     1441 cagcggggta ggccggacag atgagagtac ccgcaacgaa gagagctctg aacatgacct
     1501 gctcggggat gaacctccca gcaccaccaa cacccctgga agcctgcgca agttcggtct
     1561 acaaggggat gccctacaga gcagggactt ccacttcagc atggattctc tgctagctga
     1621 gggggcaggg ctgggagggg ctgacctgcc tgggctcact gatgaggagt atgaacgcta
     1681 ccgggagctg ctagagatca agtgccacct ggaaaatggc aaccagctgg gtatcctctt
     1741 ctcccgggcc tccagtggca acagtgccct agatgtcaac cgcaatgaga gcctaggcca
     1801 tgagatggcc atgctagagg aagagcttcg gcacctagag ttcaagtgtc gcaatatctt
     1861 gcgggcacag aagatgcagc agttgcggga gcgctgtatg aaggcctggc tgctggagga
     1921 agagagtctc tatgacctgg cagccagtga gccaaaaaag catgagctgt ctgatatctc
     1981 tgaactgcca gagaaatcag acaaggatag taccagcgcc tacaacactg gggagagctg
     2041 ccgcagcact ccactgcttg tggagcctct gcctgagagc cccctgaagc gatctgctgc
     2101 tggcaattcc aacttgaacc ggaccccttc tggccctcct gtcaccaccc acctcaaggc
     2161 tgctccttca ccagggagcc cagccaagtt ccgatcactt tctcgggatc ctgaagtggg
     2221 tcgtagacaa cacacagaag agcgtgtccg ccgcagcacc aagacaagtg ttactctgga
     2281 gcgtgtgggc cctgaaggta gcccttacct ctctaggcgc catcgtggcc aggagatcga
     2341 gcagtaccac agctgtgtgc agttggcccc gccacgtacc ctggaggatc tgagccatgg
     2401 ctccttgagc ttggctagtg gttctcgggt gggcggggtg gtggctgcag ctgttgaagc
     2461 accccgcatg gagtggaaag tgaaggtgcg aagtgatggg acccgctatg tggccaagcg
     2521 gcctgtacga gatcggctgc tgaaggccag agccctgaag atccgagagg agcgcagtgg
     2581 tatgaccact gatgatgatg cagtaagtga gatgaagatg ggccgctact ggagcaaaga
     2641 agagaggaag caacacctga ttcgagcacg ggaacaaagg aagcgtcgtg aattcatgat
     2701 gcaaagccgt ctggagtgtc taagggagca gcagaacggt gacagcaaac ctgagctcaa
     2761 cattattgcg ctgagccacc gtaagaccat gaagaagcga aacaagaaga ttctggacaa
     2821 ctggatcacc atccaggaga tgctggccca tggtgcccgc tcagctgatg ggaaaaggat
     2881 ctacaaccct ctgctctctg tcaccactgt ctgagctgct ccagcgggag cccagcccag
     2941 gcctagagag cctgaccctc accctccctt agaatctagt gtgtgtgtcg atgtgtgtgc
     3001 ttgcacgatg tgctcatgca cactcctacc tgtatatgta tgtgtgcaca ggactttggt
     3061 aaatagaaag ccccaagaag ggacacttct cttacaccta gttccttctc cccaagaagc
     3121 tatgccaaca accagcatag aggcataccc ataaagagca cctctgtgtg cgtacacatg
     3181 gtattcttgc tatgttcttg gagacaggga agtcagtgca gagaggtgag gtgaactatc
     3241 ctaagcacaa gagaatgtcc agcttcatgc tgagaacgac ctctcccctc ctaggagctg
     3301 caattatttg tagacaaagg caaccctgaa ttttgtgatt tttcttcttt tttgtgcttg
     3361 ccaatagttg ttttctgttt tgtggacctg ctctgggggc tggcagctcc tttaggtagc
     3421 ctggcaaagg tggaccccac tgagtgctgg ctgagaagga ggttgggggg aggaaaaaaa
     3481 gggagggctg ggtgggaggg aaaggaagaa gatgggttag aataaaaagc agctgtcctg
     3541 gtggcctcta ccctgaggag tagcaagggg gctcttcctt ggctttcaag gcttaaccat
     3601 gaggcccact actctcacca gtgactgaag gagagtgaga tcacagggat tttgggcaca
     3661 gtatccatgc aaaagaattc tatgtcaact gggacagagc cactcttctc agtggcctaa
     3721 agcaaggagt gccaaaccaa atgagcaaca cagaagacct tacctagttt agggatgatc
     3781 tggtgggagt tgggaggcct gggcccaatg aaaggaaggt gggctaagag atgcctagga
     3841 cccacttaaa tgtgccactt gtttggtgcc tctcaggctt ggtgaagctc actggatgct
     3901 acaggatgcc cctgatcccc acctacatcc caagaataaa gcaagctgcc tttttactct
     3961 gttga
//
