LOCUS       NM_001134961            4328 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus pyridoxal-dependent decarboxylase domain
            containing 1 (Pdxdc1), mRNA.
ACCESSION   NM_001134961 XM_001077670 XM_222536
VERSION     NM_001134961.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4328)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4328)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474017.1.
            
            On or before Sep 15, 2008 this sequence version replaced
            XM_222536.4, XM_001077670.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132295,
                              SAMD00132297 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4328
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q11"
     gene            1..4328
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /note="pyridoxal-dependent decarboxylase domain containing
                     1"
                     /db_xref="GeneID:304721"
                     /db_xref="RGD:1562597"
     exon            1..190
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     CDS             170..2527
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /note="pyridoxal-dependent decarboxylase domain-containing
                     protein 1-like"
                     /codon_start=1
                     /product="pyridoxal-dependent decarboxylase
                     domain-containing protein 1"
                     /protein_id="NP_001128433.1"
                     /db_xref="GeneID:304721"
                     /db_xref="RGD:1562597"
                     /translation="MDASLEKIADPTLAEMGKNLKEAMRMLENSPRRIEEESGKKPVP
                     EDIPGPLQGSGQDMVSILQLVQNLMHGDEDEEPQSTRIQNIGEQGHMALLGHSLGAYI
                     STLDKEKLRKLTTRILSDTTLWLCRIFRYENGCAYFHEKEREGLAKICRLAIHSRYED
                     FVVDGFNVLYNKKPIIYLSAAARPGLGPYLCNQLGLPFPCLCRVPCNTMFGSQHQMDV
                     AFLEKLIKDDVERGRLPLLLVANAGTAAVGHTDKIGRLKELCEQYGIWLHVEGVNLAT
                     LALGYVSSSVLAATKCDSMTLTPGLWLGLPAVPAVTLYKHDDPALTLIAGLTSNKPAD
                     KLRALPLWLSLQYLGLDGIVGRIKHACQLSQRLQESLKKVDHIKILVEDELSSPVVVF
                     RFFQELPTLDPAFKVAAVSNIAAAAVGRERHSCDALNRWLGEQLKQLVPQCGLTVMDL
                     DIDGTCVRFSPLMTAEALGTRGEDVDQLITCIQSKLPVLTCTLQLREEFKKEVEGTAG
                     LLYVDDPNWPGIGVVRYEHANDDNTSLQSDPEGEKIHTGLLKKLNELESDLTFKMGPE
                     YKSMKSCIYIGMASDDVDVSELVETIAITAREIEENSRLLENMTEVVRKGIQEAQVQL
                     QKANEERLLEEGVLRQIPVVGSVLNWFSPVQASQKGRSFNLTAGSLESTEYTYVYKVQ
                     GTGVTPPPTPSGTRSKQRLPGQKPFKRSLRSSDAVSETSSVSHIEDLEKVEQLPSGLE
                     HDNLEAQCPEQPCRAADPVARQTEALQDEEDDHSQMGTRVRRLKV"
     exon            191..264
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            265..330
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            331..411
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            412..558
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            559..748
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            749..817
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            818..896
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            897..981
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            982..1030
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            1031..1132
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1258
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            1259..1309
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            1310..1373
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            1374..1462
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            1463..1568
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            1569..1740
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            1741..1859
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            1860..1981
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            1982..2074
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            2075..2171
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            2172..2276
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            2277..2494
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
     exon            2495..4328
                     /gene="Pdxdc1"
                     /gene_synonym="RGD1562597"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caagccgcag gatccctgct ggccgcgctg cggggcagct cctcctcctc tccgcccggc
       61 cggctgcggg cgccggggac gtcagcgctg ccagcgtgga agtcgctgtg ggccgcggga
      121 ggcggaagta gttcccggca ccgcgggacc aacaccaaac gcctcagcta tggacgcgtc
      181 cctggagaag atagcagacc ctacattagc tgaaatggga aaaaacttga aagaggcgat
      241 gcggatgctg gagaacagcc caagaagaat agaggaagaa agtggaaaga aaccagtgcc
      301 tgaggatatt ccaggaccac tccaaggcag tgggcaagat atggtgagca tcctccagtt
      361 agttcagaat ctgatgcatg gagacgaaga tgaggagccc cagagcaccc gaatccagaa
      421 tattggagaa caaggtcaca tggctttgtt gggtcatagt ctgggtgcct atatttcaac
      481 tctggataaa gagaagctaa gaaaacttac aaccaggata ctttctgaca ctaccttatg
      541 gctatgccgg attttcaggt acgaaaatgg atgtgcttat ttccatgaga aagagaggga
      601 aggacttgct aagatctgta ggcttgccat tcattctcgc tatgaagact ttgtagtgga
      661 tggattcaac gtgttgtata acaaaaagcc tatcatatat cttagtgctg ctgctagacc
      721 tggcctgggc ccgtaccttt gtaatcagct tggcttgccc ttcccctgcc tgtgccgtgt
      781 gccctgtaac actatgtttg gatcccagca tcagatggac gttgcctttc ttgagaaact
      841 gatcaaagat gacgtagaaa gaggaagact gccattgctg cttgttgcaa atgctggaac
      901 tgcagcagtc ggacacacag acaagattgg acgtctgaag gaactctgtg agcagtatgg
      961 catttggctc catgtggaag gtgtgaatct ggcaacattg gctctaggtt atgtctcctc
     1021 gtctgtgctg gctgcaacca aatgcgatag catgacactg actcctggcc tgtggctagg
     1081 tttgccagct gttcctgcag tgacactcta caaacatgac gatcctgcct tgacactaat
     1141 tgctggcctt acatcaaata agcctgcaga caaacttcga gccctgccac tctggttgtc
     1201 tctacaatac ttgggacttg atggcattgt ggggagaata aagcacgctt gtcagctgag
     1261 tcaacgactg caagagagtt tgaagaaagt ggaccacatc aaaatcctgg tggaagatga
     1321 gctcagttct ccagtagtgg tattcagatt tttccaggaa ttaccaacct tagatccagc
     1381 atttaaagtt gccgctgtat ccaacatagc agctgcagca gttggccgag agagacactc
     1441 ctgtgatgca ctaaaccgct ggttgggaga acagttgaaa cagctggtgc ctcaatgtgg
     1501 cctcactgtc atggacctgg acatagatgg cacatgtgtt cggttcagcc ctttgatgac
     1561 agcagaagca ttaggaactc gaggagagga tgtagatcaa ctcatcacct gcatccaaag
     1621 caaactgcca gtcctgacat gtacactaca gctacgggaa gaattcaaga aggaggtaga
     1681 ggggacagcc gggctcctgt atgtggatga ccccaactgg cctggaattg gagttgtcag
     1741 gtatgagcat gctaatgatg ataacaccag tttgcaatct gatccagagg gggaaaaaat
     1801 acacactgga cttctgaaaa agttaaatga actggaatct gacctcacat ttaaaatggg
     1861 ccctgagtac aaaagcatga agagctgcat ttacattggc atggcaagtg atgatgtgga
     1921 tgtttctgag ctagtggaga ccattgctat cacagcccgg gaaattgaag agaactcaag
     1981 gcttctagag aacatgacag aagttgttcg gaagggaatt caggaggctc aggttcagct
     2041 acagaaggca aatgaggagc ggcttctgga agagggagtg ttgcggcaaa tccctgtagt
     2101 aggatccgtg ctgaattggt tttctccagt ccaggcttca caaaagggaa gaagttttaa
     2161 cttaacagca ggttctctgg agtccacaga atacacctat gtctacaaag tacaaggtac
     2221 aggagtgaca ccacctccta caccctcagg cactcgaagc aaacaaaggc tcccaggtca
     2281 gaagcctttt aaaaggtccc tgagaagctc ggatgctgtg agcgagacca gctcagtcag
     2341 ccacattgaa gacctggaaa aggtggaaca gttgcccagt gggctagagc acgacaacct
     2401 agaggcccag tgccccgagc agccctgcag ggctgctgac cctgtggcca gacagactga
     2461 ggccctgcag gatgaggaag atgaccactc acagatggga accagggtgc ggagacttaa
     2521 ggtttagccc acctgtaaac tctcacctct aggatttgct tgtcatcttg ctgcaaccag
     2581 aaatccacat gtgggaatgg cgtccaggaa cacgggccta ttcgaagttg ttctgtcttt
     2641 gcatcataaa tgctaatcat ctaaaagaac catttccatg acaagctgta aggacactgc
     2701 cttcctacct gcttagtcta gctcccaggt tgtttgtccc cttagctgag aagctgcaca
     2761 cactgacctc ctgtaataac aaagctgcca ccatcgagtg cctctctgtg tttggtcctg
     2821 tgcgttgctg tgtttacttt tgacaacaag cctacaagaa aacagcatgc tgccctatca
     2881 aggggaagct gatggtgagg tgtcaagtca cgtgtccagt gagcatcagc agtgcctcaa
     2941 agccaggtag gtctgactaa aataaagcct gtattcctcg tggctacaca aaatacctcc
     3001 ttattactac taccctaagc aaatagtcat catgtcacag gaaacagctc acagtgccca
     3061 agtatgacag acagttcaca cctgccaacc aacactcagg aggctgaggc tgaggctgaa
     3121 ctcaaagatc actttgggtt ccaggacagc ctggatgata agagtgaggc cttgtctcac
     3181 aaaaggaata aaataacaga tctgaggttt ttagtttttg ttgctgtttg tctgttttgt
     3241 ttttgagaca ggtactgact ggtagaccag gctggcctca aactgagaga gatcttcctg
     3301 ctttaaagtg tgcaccacca tacctcacct ggttttatgt tttgcagtgg gtctcatgta
     3361 gtttgggctg gccttgacgc ccctatgtgg aatcacaggt gtatgcacca ccacaaccag
     3421 ttctgtagaa gctgattggc caaaagaccc cttccttgaa tttccaaatc atgccagtgg
     3481 taattttcag ctttgagcag gttactcaat attctattta ttaactaaat aacaaaagga
     3541 atcttaaagt gggttccagg ccaccctggg ctgcagtgtg actctctgtc tcaaaaaaaa
     3601 caaaacaaaa caaaacaaac aaacaaaaaa aaccccaaaa acaaaaaaca aaactaaacc
     3661 accaaactgg tcatggtagt tgataatccc atcacttggt ggacatttat gcaggaggct
     3721 tgccatagtt ccaagacacc ctaggctaca ttgcaaaacc gtatcaaatg caaatttttt
     3781 taaagacaaa attaggactc ctgaaaatgg taagagattg gcaaaatgaa tgtgtaacac
     3841 taaacacttt acactacaca aagaagcaga cttttgagct tgctggggca tgagttactg
     3901 gcacatatgt gaaaccaggc atctgtgccc tgtgtcttca gttgtttttg agacagagac
     3961 agggcctcag ggtctcccac taaaagttcg gcaaggctgg ctggctagaa acctcaataa
     4021 tctgcctgtc tgtctgtcct cagtactaga ctggaagcat gctcagtaca cgtggattct
     4081 tatgtcagtg cacagattat atcaacacag caagcaagta cttggccagt gaactcccac
     4141 ccccatccca cctcaaccct ggctcctgtt tggcttcctt tttgaaaact acacacccca
     4201 ggctggtctc tacctcacag caatccacct gtctgtctcc tgagtgctta gactaaaact
     4261 gccaccatgc caggcttatt ctgggcattt taaattcttc gagcttctac caattcttca
     4321 gatgggat
//
