LOCUS       NM_001014249            2100 bp    mRNA    linear   ROD 20-SEP-2024
DEFINITION  Rattus norvegicus decaprenyl diphosphate synthase subunit 2
            (Pdss2), mRNA.
ACCESSION   NM_001014249 XM_345115
VERSION     NM_001014249.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 2100)
  AUTHORS   Saiki,R., Nagata,A., Kainou,T., Matsuda,H. and Kawamukai,M.
  TITLE     Characterization of solanesyl and decaprenyl diphosphate synthases
            in mice and humans
  JOURNAL   FEBS J 272 (21), 5606-5622 (2005)
   PUBMED   16262699
REFERENCE   3  (bases 1 to 2100)
  AUTHORS   Lyon,M.F. and Hulse,E.V.
  TITLE     An inherited kidney disease of mice resembling human
            nephronophthisis
  JOURNAL   J Med Genet 8 (1), 41-48 (1971)
   PUBMED   5098070
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC085898.1.
            
            On Apr 1, 2005 this sequence version replaced XM_345115.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC085898.1, SRR8487230.56932.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132291, SAMD00132292
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20q13"
     gene            1..2100
                     /gene="Pdss2"
                     /note="decaprenyl diphosphate synthase subunit 2"
                     /db_xref="GeneID:365592"
                     /db_xref="RGD:1359372"
     exon            1..525
                     /gene="Pdss2"
                     /inference="alignment:Splign:2.1.0"
     CDS             227..1432
                     /gene="Pdss2"
                     /EC_number="2.5.1.91"
                     /note="decaprenyl pyrophosphate synthetase subunit 2;
                     decaprenyl pyrophosphate synthase subunit 2;
                     all-trans-decaprenyl-diphosphate synthase subunit 2;
                     prenyl (solanesyl) diphosphate synthase, subunit 2; prenyl
                     (decaprenyl) diphosphate synthase, subunit 2;
                     solanesyl-diphosphate synthase subunit 2"
                     /codon_start=1
                     /product="all trans-polyprenyl-diphosphate synthase PDSS2"
                     /protein_id="NP_001014271.1"
                     /db_xref="GeneID:365592"
                     /db_xref="RGD:1359372"
                     /translation="MSLRQLLLRLSGYLGASGPPNRHWWYFRSLDTISSVGSWRGRSS
                     RSPAHWNQVVSEAEKIVGYPASFMSLRCLLSDELSNVAMQVRKLVGTQHPLLTTARGF
                     VHDSRHNLQLRGLVVLLISKAAGPSTRNSSSQNYDMVSGIYSCQRNLAEITELIHTAL
                     LVHRGIVNLSELQSSDGPLKDMKFGNKIAVLSGDFLLANACNGLALLQNTKVVELLAS
                     ALMDLVQGIYQENSASTQGNPIPDDIRISTWKEQTFLSHCALLAKSCKAAMELAKHDA
                     AVQDMAFQYGKHMAMSHKINSDLQPFIKDKASDSKTFNLNSAPVVLHQEFLGRDLWIK
                     QIGEAQEKGRLNYTKLRETIKAGKGVTSAIDLCRYHGNKALEALESFPPSEARSALEN
                     IVFAVTRFS"
     exon            526..660
                     /gene="Pdss2"
                     /inference="alignment:Splign:2.1.0"
     exon            661..859
                     /gene="Pdss2"
                     /inference="alignment:Splign:2.1.0"
     exon            860..934
                     /gene="Pdss2"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1108
                     /gene="Pdss2"
                     /inference="alignment:Splign:2.1.0"
     exon            1109..1240
                     /gene="Pdss2"
                     /inference="alignment:Splign:2.1.0"
     exon            1241..1273
                     /gene="Pdss2"
                     /inference="alignment:Splign:2.1.0"
     exon            1274..2076
                     /gene="Pdss2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtaggtggc cagtgtagtt ctgagcagcc actagggata tgccagtctg cgctgcagaa
       61 gcagcaaact ttactcctgg ctacggctct agaaagccac acttctctga gggtttggaa
      121 ttaccgtttc cttttagatt ctaaaagttt ctcctcagcc cttgtttgtt tcttgtgtca
      181 tttctggaca cctttctcag gtccctgacc ctctcagact taaactatga gcctccggca
      241 gctgctgttg cgcttgtccg gttatctcgg ggcttctggt cccccaaatc gccactggtg
      301 gtacttcaga tctctcgaca ccatctcctc ggtaggctcc tggcgtggtc ggtcctccag
      361 gtctccagcc cattggaacc aggtggtgtc agaggcagag aagatcgtgg gttaccccgc
      421 atccttcatg agcctccgct gcctgctgag cgacgagctc agcaacgtcg ctatgcaggt
      481 gcggaagctg gtggggactc agcacccact gcttaccact gccaggggct tcgtgcatga
      541 cagcagacat aacctacagc tgcggggcct ggtggtgctg ctcatttcca aagcggcggg
      601 gcccagcact aggaactctt ccagtcagaa ctacgacatg gtcagtggga tatactcatg
      661 tcaaagaaat ttggcagaga tcacagaact tatacatact gctctcctgg tgcatcgtgg
      721 gatagtaaac ctaagcgaat tacagtcttc tgatggacca ctgaaagaca tgaagtttgg
      781 aaacaagata gctgtcctga gtggagactt cctcctagca aacgcctgta atggactagc
      841 tcttctacag aacaccaagg ttgtggagct cctagcaagt gctctgatgg acttggtgca
      901 aggcatctac caggaaaact ctgcttccac ccagggaaat cctatcccag atgacatcag
      961 aatatcgacc tggaaggagc agactttcct atcccactgt gccttgctag cgaagagctg
     1021 caaggccgcc atggagttag cgaagcatga cgctgcggtc caagacatgg cgtttcaata
     1081 cggaaagcac atggccatga gccacaagat aaattctgac ctccagcctt ttattaaaga
     1141 caaggccagt gactctaaga cttttaacct aaactcggca cccgtagtct tacatcagga
     1201 gtttctcggg agagatttgt ggattaagca gattggagag gctcaagaaa aaggaaggtt
     1261 gaactacact aagttgcggg aaacaatcaa agctggcaaa ggtgtgactt cagctattga
     1321 cctgtgtcgt taccatggaa acaaggcact ggaggccctg gagagcttcc ctccctcaga
     1381 ggccagatcg gctttagaaa acattgtgtt tgccgtgacg agattttcat gacaccaaat
     1441 taaaaagact ctgtcgttcc taagctgaaa aacccagaga atgaggtgga caggagagtt
     1501 ttttgtgaca aaacaagtaa tgtgtttaat gactttaaaa atagatgtat cctgtcctgt
     1561 atctcacggc ctaatgaatc tctcctctgg aaccactaca aacagaacga gaaggataaa
     1621 ggtcacacgg ttttcgcttg tcacgccaga gaacacttga ggctgcagca aaagaaataa
     1681 ttaatgagac tcgctcccgt gacctcagca aatggacagg aaataagtcc ttattgattg
     1741 gaccaagccc gggatggcgc cagggcggtg gctgtggttt tccttgtaaa gaggacggag
     1801 cgagctggaa gctgcaggtg tcaggagaag caccgggtac gagcaggggg gacacatgga
     1861 gacggccggt ctgtcggtct gtcggagtgg agagtggctc gatacgggaa gccaaggtct
     1921 gttgcctgcc gtcctgcagt catgtgtctg tctacagggg agaggctcgt gcagcgtgag
     1981 tgtcttgtca gatttggggg aggtgaagga aatgttagtg ccaagaactt ggaattggct
     2041 attaaagtgt taccaagtgt tgatccagtt gtaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
