LOCUS       NM_001400847            1543 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus decaprenyl diphosphate synthase subunit 1
            (Pdss1), mRNA.
ACCESSION   NM_001400847 XM_003751734
VERSION     NM_001400847.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1543)
  AUTHORS   Saiki,R., Nagata,A., Kainou,T., Matsuda,H. and Kawamukai,M.
  TITLE     Characterization of solanesyl and decaprenyl diphosphate synthases
            in mice and humans
  JOURNAL   FEBS J 272 (21), 5606-5622 (2005)
   PUBMED   16262699
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Jan 28, 2022 this sequence version replaced XM_003751734.5.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158695.1, SRR26643292.58675.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-144               JAXUCZ010000017.1  89968494-89968637
            145-209             JAXUCZ010000017.1  89974107-89974171
            210-330             JAXUCZ010000017.1  89974588-89974708
            331-461             JAXUCZ010000017.1  89980197-89980327
            462-603             JAXUCZ010000017.1  89986803-89986944
            604-715             JAXUCZ010000017.1  89988636-89988747
            716-825             JAXUCZ010000017.1  89988841-89988950
            826-906             JAXUCZ010000017.1  89995834-89995914
            907-1020            JAXUCZ010000017.1  89996038-89996151
            1021-1101           JAXUCZ010000017.1  90002268-90002348
            1102-1543           JAXUCZ010000017.1  90006373-90006814
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.3"
     gene            1..1543
                     /gene="Pdss1"
                     /note="decaprenyl diphosphate synthase subunit 1"
                     /db_xref="GeneID:100364990"
                     /db_xref="RGD:2319976"
     exon            1..144
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
     CDS             13..1242
                     /gene="Pdss1"
                     /EC_number="2.5.1.91"
                     /note="COenzyme Q (ubiquinone) biosynthesis family member
                     (coq-1)-like; prenyl (decaprenyl) diphosphate synthase,
                     subunit 1"
                     /codon_start=1
                     /product="all trans-polyprenyl-diphosphate synthase PDSS1"
                     /protein_id="NP_001387776.1"
                     /db_xref="GeneID:100364990"
                     /db_xref="RGD:2319976"
                     /translation="MALRWSCWRRRCSWRPALVGSPRPARPGCAGPLGTRAASDTRAQ
                     IPYFSLLKILTSASPNMHSISQFHQRTPAMCCCSQTQSGEKYSDPFKLGWRDLKGLYE
                     DIRKELHISTRELKDMSEYYFDGKGKAFRPIIVVLMARACNIHHNNSREMQARQRSVA
                     LVAEMIHTATLVHDDVIDDASSRRGKHTVNKVWGEQKAVLAGDLILSAASIALARIGN
                     TAVVSLLAQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLG
                     CPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFAC
                     QQFPEMNAMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHKAVREIRKLRPST
                     ERDALIQLSESVLTRDK"
     exon            145..209
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
     exon            210..330
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
     exon            331..461
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
     exon            462..603
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
     exon            604..715
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
     exon            716..825
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
     exon            826..906
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1020
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
     exon            1021..1101
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
     exon            1102..1543
                     /gene="Pdss1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagactcgta ccatggctct gcgctggtca tgctggcggc gccgctgctc ctggaggccg
       61 gcgctggtcg ggagcccgcg gccggcacgc cctggctgtg caggaccgct cgggacacgc
      121 gccgcctcgg acacccgcgc gcagataccc tattttagtc ttttgaagat tttaacatct
      181 gcctccccaa atatgcatag tatatcgcag tttcatcaaa ggacaccagc aatgtgctgt
      241 tgtagtcaaa ctcagagtgg tgagaaatac agtgatcctt ttaaacttgg ctggagagac
      301 ttgaaaggtc tatatgaaga cattagaaag gaactgcaca tctccaccag agaactgaag
      361 gacatgtctg aatactactt cgatggcaaa ggaaaagcct ttaggccgat tattgtggtg
      421 ctaatggccc gagcgtgtaa tattcatcat aataactccc gagagatgca agccagacag
      481 cgctccgtag ccttagttgc agaaatgatc cacactgcta ctctggttca tgatgacgtt
      541 attgacgatg caagttctcg aagaggaaaa catacagtta ataaagtctg gggtgagcaa
      601 aaggctgttc ttgctggaga tttaattctt tctgcagcat ccatagctct ggcacggatt
      661 ggaaacacag cagttgtatc gctgttagcc caagttattg aagatttggt gcgtggtgaa
      721 tttcttcagc tagggtcaaa agaaaatgag aatgaaaggt ttgcccacta ccttgaaaag
      781 accttcaaga agacagccag cctgatagcc aacagttgta aagcagtctc tgtcctgggt
      841 tgccctgacc cagtggtgca tgagattgcc tatcagtatg ggaaaaacgt tggaatagct
      901 tttcagctca tagatgatgt attggatttc acctcatgtt ctgaccagat gggcaagcca
      961 acatctgcag acctgaagct aggcatagcc accggccctg tcttgtttgc ttgccagcag
     1021 ttcccagaaa tgaatgctat gataatgaga cggttcagtt tgccaggaga tgtggacaga
     1081 gcacggcaat atgtattaca gagtgacggc gtgcagcaaa ccacctacct cgcccagcag
     1141 tattgccaca aggcagtgcg agagatccgg aagcttcgac cttctacaga aagggacgcc
     1201 ctcattcagc tttcagaaag tgtgctcaca agagataaat gacaattctt tttgttcttt
     1261 ctggcagcta ttttaccaga ctgtgcctaa tgaattttgt gaaacactat ttgcttcatg
     1321 tgcagataac caaaaatcat tttaaaaaat aatttcaacc ttattgatgg gcaatttttt
     1381 tattggcaaa gtttttcaga aaacttttta aatgtaatta aaccattgtc atcatagtgc
     1441 tataaattct aatcgaggta tcctgatggt tatatgtggt attgtttaca ctgttaatgc
     1501 ccacatgtaa agccattaca caaataaata atcaatgtta aaa
//
