LOCUS       XM_039089324            7504 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus PDS5 cohesin associated factor B
            (Pds5b), transcript variant X6, mRNA.
ACCESSION   XM_039089324
VERSION     XM_039089324.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086030) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7504
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..7504
                     /gene="Pds5b"
                     /gene_synonym="Aprin; AS3; CG008"
                     /note="PDS5 cohesin associated factor B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 mRNAs, 11 ESTs, 188 long SRA reads, 9 Proteins"
                     /db_xref="GeneID:304218"
                     /db_xref="RGD:1310838"
     CDS             373..4719
                     /gene="Pds5b"
                     /gene_synonym="Aprin; AS3; CG008"
                     /codon_start=1
                     /product="sister chromatid cohesion protein PDS5 homolog B
                     isoform X4"
                     /protein_id="XP_038945252.1"
                     /db_xref="GeneID:304218"
                     /db_xref="RGD:1310838"
                     /translation="MAHSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMD
                     MDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDK
                     LKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT
                     LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLA
                     KALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSHLLLSVLPQ
                     LEFKLKSNDNEERLQVVKLLAKMFGAKDSELASQNKPLWQCYLGRFNDIHVPIRLECV
                     KFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVNDHLLNF
                     VRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAGKDAAKQICWVKDKLLHIYYQNSID
                     DRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLLRHQVKD
                     LLDLIKQPKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVLEDDEKIRKQLEAL
                     VSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIKFLLERIAPVHIDTESISALIKQ
                     VNKSIDGTADDEDEGVPTDQAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDE
                     KVAEAALQIFKNTGSKIEEDFPHIRSALLPVLHHKSKKGPPRQAKYAIHCIHAIFSSK
                     ETQFAQIFEPLHKSLDPSNLEHLITPLVTIGHIALLAPDQFAAPLKSLVATFIVKDLL
                     MNDRLPGKKTTKLWVPDEEVSPETMVKIQAIKMMVRWLLGMKNNHSKSGTSTLRLLTT
                     ILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITLEQYQLCALAINDE
                     CYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNITVRREY
                     LKQHAAVSEKLLSLLPEYVVPYTIHLLAHDPDYVKVQDIEQLKDVKECLWFVLEILMA
                     KNENNSHAFIRKMVENIKQTKDAQGPDDTKMNEKLYTVCDVAMNIIMSKSTTYSLESP
                     KDPVLPARFFTQPDKNFSNTKNYLPPEMKSFFTPGKPKTANVLGAVNKPLSSAGKQSQ
                     TKSSRMETVSNASSSSNPSSPGRIKGRLDSTEMDHSENEDYTMSSPLPGKKSDKREDS
                     DLVRSELEKPRSRKKASVTDPEEKLGMDDLSKLVQEQKPKGSQRGRKRGHAASESEEQ
                     QWPEEKRHKEELLGNEDEQNSPPKKGKRGRPPKPLGGTSKEEPVVKTSKKGNKKKPAP
                     PVVDEDEEEERQMGNTEQKSKSKQQRTSKRAQQSRAESPETSAVESTQSTPQKGRGRP
                     SKTPSPSQPKKNIRVGRSKQVATKENDSSEEMDVLQASSPVSDDTTQEGAEEEDISAG
                     NVRRRSSKRERR"
     polyA_site      7504
                     /gene="Pds5b"
                     /gene_synonym="Aprin; AS3; CG008"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 caacctccca catcccatca tcccacatgt cgtcatccca cagtgggtgg aaacgtgttc
       61 ctttaacatc tactggcttt gcccttcagt cctaagagta gaacctagga cctcaggtgt
      121 agcagctgga agtatataag gacatgggtg cagggagctt ttgctcttca tctgcttgcc
      181 ctcgccttgc tggcacatcc attccttcac tggcattggg gccttcttct ttgggattcc
      241 agcagataca gaagaccagc tgagatatct agccttgtgg gacagagcaa ctactgggtt
      301 cccggacttc ccagtcacag ctgcccatta ctggattagc tggaccacag cctgggtaca
      361 gacatttcca tcatggctca ttcaaagaca agaaccaacg atggcaaaat tacttaccct
      421 cctggtgtca aggagatctc agataaaatc tctaaagagg agatggtgag gcggctaaag
      481 atggttgtaa aaacattcat ggacatggac caggactctg aagaggaaaa ggaactgtat
      541 ctaaacctag ctttacacct tgcttctgac ttcttcctca agcatcctga taaagatgtc
      601 cgtttactgg tggcttgctg ccttgctgat attttcagga tttacgctcc tgaggctcct
      661 tacacatctc ccgataaact aaaggatata tttatgttta taacaaggca attgaaggga
      721 ctggaggaca caaagagccc tcaattcaat aggtattttt atttacttga gaacattgca
      781 tgggttaaat catataacat atgctttgag ttagaagata gcaatgaaat ctttactcaa
      841 ctatacagaa cattattctc agttataaac aatggccaca atcagaaagt tcacatgcac
      901 atggtggacc ttatgagctc tatcatctgt gaaggtgaca cagtatcgca ggagctccta
      961 gatacagtct tagtgaatct ggtgcctgct cataagaact taaacaagca agcgtatgat
     1021 ttggcaaagg cgttgctgaa gaggaccgct caagctattg aaccctatat taccaatttt
     1081 tttaatcagg ttctgatgct tgggaaaaca tctatcagtg atttgtctga gcatgtcttt
     1141 gatttgatct tggaactcta caacattgac agccatttgc tgctttctgt tctgccccag
     1201 cttgagttta aattaaagag caatgacaat gaagaacgcc tccaggttgt taaactcctg
     1261 gcaaaaatgt ttggggcaaa ggactcagaa ttggcctctc aaaacaaacc actctggcag
     1321 tgctacttgg gcaggttcaa tgacatccat gtgccaatac gcctggaatg tgtgaagttt
     1381 gccagccact gcctcatgaa ccatcccgat ttagcaaagg atttaacaga gtatcttaaa
     1441 gtgaggtcac acgaccctga agaagctatt agacatgatg tcattgtgtc tatagtaaca
     1501 gctgctaaaa aggacattct tcttgtcaac gatcacctac tcaactttgt gagagagcga
     1561 acgttggaca aacggtggag agtacgcaaa gaagccatga tgggacttgc ccagatttac
     1621 aagaaatacg ctttacagtc agcggctggc aaggacgctg ccaagcagat atgctgggtc
     1681 aaggacaagc tgctgcatat atactatcag aacagcattg atgaccggtt gcttgttgag
     1741 cggatctttg ctcagtacat ggttcctcac aacttggaaa ctacggagcg gatgaagtgc
     1801 ttgtactact tgtatgctac cctggacctg aatgccgtga aggcattgaa tgaaatgtgg
     1861 aaatgtcaaa atctactccg acatcaagta aaggatttgc ttgatttaat taaacaacca
     1921 aaaacagatg ccagtgtcaa ggccatattt tctaaagtga tggttattac aagaaatttg
     1981 ccagatcctg gtaaggccca ggacttcatg aagaaattca cacaagtgtt ggaagatgat
     2041 gagaaaatac ggaaacagct ggaggccctt gttagcccta catgctcctg caagcaggct
     2101 gaaggctgtg tgcgtgaaat aactaagaag ctgggaaacc ctaaacagcc tacgaacccc
     2161 ttcttggaga tgatcaagtt cctcctggag aggatagccc ctgtgcacat tgacactgag
     2221 tctatcagcg ctcttatcaa gcaggtgaat aagtcgatag atgggacagc agatgatgag
     2281 gacgagggcg tccccacaga tcaggctatc cgcgcgggcc tcgagctgct gaaggtgctg
     2341 tcttttacac accctatctc attccactct gccgagacgt ttgaatccct gctggcttgt
     2401 ctgaagatgg atgatgaaaa ggtggcggaa gctgccctac aaattttcaa aaacacagga
     2461 agcaaaatcg aagaggattt ccctcacatc agatcagcct tgcttcctgt cctacatcac
     2521 aaatccaaaa aaggaccacc tcgtcaggcc aagtacgcca tccactgcat tcatgccata
     2581 ttttccagta aagagaccca gtttgcacag atatttgagc ctctgcataa aagcctggac
     2641 cccagcaacc tggagcacct gatcaccccg ctggtcacca ttggtcacat cgctctgctc
     2701 gcgcctgatc agttcgctgc cccactcaag tccttggtag caactttcat tgtgaaggac
     2761 cttctcatga acgatcggct tccaggaaaa aagacaacta agctttgggt tcctgatgaa
     2821 gaagtctccc ctgagacaat ggtcaaaatt caggctatta agatgatggt tcgctggctg
     2881 ctcggaatga aaaataatca cagtaaatca ggaacttcca ccctcagatt actaactacg
     2941 atactgcata gtgatgggga cttgacagaa caagggaaaa ttagtaaacc ggacatgtcc
     3001 cgcctgagac ttgctgctgg gagtgctatt gtgaagctgg cgcaagagcc ctgttaccac
     3061 gagatcatca cactggagca gtaccagctg tgcgcactgg ccatcaatga cgagtgctat
     3121 caagtcaggc aggtgtttgc tcagaaactt cacaaaggcc tctcccgctt acggctccca
     3181 ctagagtaca tggccatctg tgctctctgt gccaaagacc cggtgaaaga gcggagagcg
     3241 catgccaggc agtgcctggt gaagaacatc actgtgagga gggagtacct gaagcagcac
     3301 gcggctgtta gtgaaaaatt attgtctctt ctcccagagt atgttgttcc gtatacaatt
     3361 caccttttgg cacatgaccc cgactatgtc aaagtgcagg atattgaaca acttaaagat
     3421 gtgaaagaat gcctttggtt tgttctggag atattgatgg ctaaaaatga aaacaacagc
     3481 catgcattta tcagaaagat ggtagaaaat attaaacaga caaaagatgc tcaaggacca
     3541 gatgatacaa aaatgaatga aaaattgtac accgtgtgtg atgtagccat gaacatcatc
     3601 atgtcaaaga gcaccacata cagtctggag tccccaaaag acccagtgtt gcctgctcgg
     3661 tttttcaccc agcctgacaa gaattttagt aacaccaaaa attacctgcc tccagaaatg
     3721 aaatcatttt tcactcctgg aaaacctaaa acagccaatg tcctcggagc agttaataag
     3781 ccgctttcat cggcaggcaa acagtctcag accaaatcct cacggatgga aaccgtgagc
     3841 aacgcgagca gcagctcaaa cccaagctct cctggaagaa taaaggggag gctggatagc
     3901 actgaaatgg accacagtga gaatgaagat tacacgatgt cttcaccctt gccagggaag
     3961 aaaagtgaca agagagaaga ctctgacctt gtaaggtctg agttggagaa gcctagaagt
     4021 cggaaaaaag catctgtcac agacccagaa gagaaattag gtatggatga ccttagtaag
     4081 ctggtccagg aacagaaacc taaaggcagt cagcggggcc ggaaaagagg ccatgcggct
     4141 tcagaatcag aggagcagca gtggcctgag gagaagaggc acaaagagga gctcctggga
     4201 aatgaggacg agcagaacag ccccccgaag aagggcaaga gaggcaggcc accaaagcct
     4261 cttgggggga catccaagga agagccagtg gtgaaaacat ccaagaaggg aaacaagaag
     4321 aagcctgcac ctcctgtagt agacgaagat gaagaagaag aaagacaaat gggaaacaca
     4381 gaacagaagt caaagagcaa acagcagcgc acgtccaaga gggctcagca gagcagagca
     4441 gaatctcctg agactagtgc agttgaatcc acacagtcca caccacagaa aggacgggga
     4501 agaccatcaa aaacgccatc accatcacaa cccaaaaaaa atatccgtgt aggacgctcc
     4561 aaacaggtag ctactaaaga aaacgattca agtgaagaaa tggatgtgct tcaggccagc
     4621 tctcctgtca gcgacgacac tacgcaggaa ggagcagaag aggaggatat ttctgcagga
     4681 aatgtacggc ggcgaagctc caaacgagag agacgatgaa catgccatta actttcttta
     4741 tgaaagcttt gggaaaaaaa taacattttt ttgtcaagta tgaggctaaa taaagccctt
     4801 gatgcacaaa acgggactgc caaagtgtgg acagttggac ttttgatgac catgaatttg
     4861 tggtcacatg catcagccat tcacagagtg atgacattga ctccagagtc ttgtgaaagt
     4921 gtcatgtgtg acggctgtgt aggcataaac taaagagaag cgtgtaaata gtcccactcc
     4981 ccatctctga cttctaaagt gcttgtatag cttttatcta cggctttaaa ctgacagtac
     5041 ccagctgctt actggatcta ttaatttgaa aagcatttgc tagggtggat cttaagcagc
     5101 agtctgtcag tgtttatatt ggaattctct gcaattttac tgtgaaaact tgttttcaac
     5161 aattggtgtc attttcttga tgtcactact tgttggagtt aagtggtctc ttcctgcccc
     5221 ttcacagctc atctgtgtgt actccagggc acccgtcatc tccgagtgct aagcctctgt
     5281 cgccagcgct aatgcctctg tttggggcac tgcacggggc gggagatagt cctgaactta
     5341 cctgatgact ttacacctca gtattgctcc cagaattttc tggcctttca tggcaatgaa
     5401 aattttaaga aagagattta aaatatttta attttaaaga gtgtgttata aaataatgta
     5461 ctaaattctt tattccattc tatcatcttt tttcagttta tattaatcta ctgtatcaat
     5521 aaaattctgt aatttgaatg ggcttttaat agtctagaat gttattgtgt atagatattc
     5581 ttgaacatta tgttcagaaa tgcaaattat tacactataa tataaaatct gatatataca
     5641 cattaggaaa gttctcattc tctataacca tgtaaagtta atcagaaaca aaaaatttta
     5701 ttgatgcagt gtatctttat aaatctgttc ttgaaagcca agtgttttgt attttatagt
     5761 gagttgcatg tttatgaaaa aattgctgat catgagatgt gcttttctgt aaattcatac
     5821 ttagccatag tatatgatag atgacccctt aacatagttt ttcatcaaga gtttataatt
     5881 gtactttatt ttggagccaa aaaaattgtt tttgggggag gggctgggtg gcagtgattt
     5941 atctagtttg ggctgagact ttaggcgtca cactcacaaa cgctgagact cccactgcgt
     6001 ccagaacagg agaagtggac acttgcctgg gtttaattta gaggtctgca gagtctaaaa
     6061 atggatcatc gaggaggctc acagcgccct ttacatagag tgtgagctga aatgtattgg
     6121 gtgccacctt atgctcccct gaattaactt taggtttctg ggtgcagggt tgtttttgca
     6181 cagttgttaa caatagaaaa gaaagttaca ttctgcgcta ccgagtttac tataccaagt
     6241 agcagcagtt tcacacagta cgcctttgtg tttaaggtgt gtttccaaaa ctgaatataa
     6301 tcaattggga tgctatacag aagtgactat tttagaaatg acatcgtgct attttctagt
     6361 atgtattgca gatgatgtga ttatttttct ttttaatatt tcctcatgtt tatgaaacac
     6421 tttattttta aaaagatgtt tgaattgtgt cttaatcttt cagtgtttaa cttcatttgc
     6481 aacagtgttg gcaccagtgg tgatgggagg cgctgtctgt caggacagct aatgctggat
     6541 taggacactt tgagttttaa atgtttcatt agctcagctc tccaaacaat gatgtttcca
     6601 tctcagcagt acagaagcat gtttttaaat ttatggcaaa aataataaag gatagcactg
     6661 tatttttgtc gttaacaact tcattggaaa tatttatgga aacatgttca aaaccatttt
     6721 ataagacata cgaaattatt atggaggatt tttatttgca tgatcatagt tcaccagatt
     6781 tcactgcaca ttaatgctgt gcatcagttc atggcaaaca tggtcatcgt agactttgtg
     6841 ttcaatgcca gtgagtctgt aattctacag cccacccgtt caccttttgg aaggactata
     6901 atgtaaaatt tccatttctt gtgtagagaa ataggtgcaa taatgatcaa gtttttatgt
     6961 cctgagtctc cgtcctggga gcttcttctt atgttaaact taacacgtca tgtactaaca
     7021 tctggagagc cacatacttt aaagtaaatt aaagtaaagc taagtatgtg tccagcatct
     7081 gtgccgacag ccgttagcac acgctgctgc ggccatgctc ttttgagctg tatagctcat
     7141 tgtaacagac gccctggcgg atctgatgac tcccgggtga gcctcgcttg ctgcagtgcc
     7201 acactaagct ctcccagtga tccccactgt gtgtgtaaat gagaaatgtg ctgtaaaact
     7261 tgttctagac attaaagttt aaatgacttt ctacatcttc ctacagcttg caagtttgac
     7321 ttttaaggtt ccctttgcct cctcgaagga tatcggggat gtgatgattt gtttaactta
     7381 ggcataactc cactgcatag tgttatgtta ccataacgaa cagttggttc tagatgacaa
     7441 gtttccagac acagttttgg attttctgtg aacttaaata aacgtagaag ctcatgtaat
     7501 tata
//
