LOCUS       XM_017598313            3085 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PDS5 cohesin associated factor B
            (Pds5b), transcript variant X9, mRNA.
ACCESSION   XM_017598313
VERSION     XM_017598313.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_017598313.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3085
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3085
                     /gene="Pds5b"
                     /gene_synonym="Aprin; AS3; CG008"
                     /note="PDS5 cohesin associated factor B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 4 ESTs, 1 long SRA read, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 55 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304218"
                     /db_xref="RGD:1310838"
     CDS             20..2989
                     /gene="Pds5b"
                     /gene_synonym="Aprin; AS3; CG008"
                     /codon_start=1
                     /product="sister chromatid cohesion protein PDS5 homolog B
                     isoform X7"
                     /protein_id="XP_017453802.1"
                     /db_xref="GeneID:304218"
                     /db_xref="RGD:1310838"
                     /translation="MAHSKTRTNDGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMD
                     MDQDSEEEKELYLNLALHLASDFFLKHPDKDVRLLVACCLADIFRIYAPEAPYTSPDK
                     LKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIAWVKSYNICFELEDSNEIFTQLYRT
                     LFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELLDTVLVNLVPAHKNLNKQAYDLA
                     KALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVFDLILELYNIDSHLLLSVLPQ
                     LEFKLKSNDNEERLQVVKLLAKMFGAKDSELASQNKPLWQCYLGRFNDIHVPIRLECV
                     KFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHDVIVSIVTAAKKDILLVNDHLLNF
                     VRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAGKDAAKQICWVKDKLLHIYYQNSID
                     DRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAVKALNEMWKCQNLLRHQVKD
                     LLDLIKQPKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKFTQVLEDDEKIRKQLEAL
                     VSPTCSCKQAEGCVREITKKLGNPKQPTNPFLEMIKFLLERIAPVHIDTESISALIKQ
                     VNKSIDGTADDEDEGVPTDQAIRAGLELLKVLSFTHPISFHSAETFESLLACLKMDDE
                     KVAEAALQIFKNTGSKIEEDFPHIRSALLPVLHHKSKKGPPRQAKYAIHCIHAIFSSK
                     ETQFAQIFEPLHKSLDPSNLEHLITPLVTIGHIALLAPDQFAAPLKSLVATFIVKDLL
                     MNDRLPGKKTTKLWVPDEEVSPETMVKIQAIKMMVRWLLGMKNNHSKSGTSTLRLLTT
                     ILHSDGDLTEQGKISKPDMSRLRLAAGSAIVKLAQEPCYHEIITLEQYQLCALAINDE
                     CYQVRQVFAQKLHKGLSRLRLPLEYMAICALCAKDPVKERRAHARQCLVKNITVRREY
                     LKQHAAVSDAFGLFWRY"
ORIGIN      
        1 gggtacagac atttccatca tggctcattc aaagacaaga accaacgatg gcaaaattac
       61 ttaccctcct ggtgtcaagg agatctcaga taaaatctct aaagaggaga tggtgaggcg
      121 gctaaagatg gttgtaaaaa cattcatgga catggaccag gactctgaag aggaaaagga
      181 actgtatcta aacctagctt tacaccttgc ttctgacttc ttcctcaagc atcctgataa
      241 agatgtccgt ttactggtgg cttgctgcct tgctgatatt ttcaggattt acgctcctga
      301 ggctccttac acatctcccg ataaactaaa ggatatattt atgtttataa caaggcaatt
      361 gaagggactg gaggacacaa agagccctca attcaatagg tatttttatt tacttgagaa
      421 cattgcatgg gttaaatcat ataacatatg ctttgagtta gaagatagca atgaaatctt
      481 tactcaacta tacagaacat tattctcagt tataaacaat ggccacaatc agaaagttca
      541 catgcacatg gtggacctta tgagctctat catctgtgaa ggtgacacag tatcgcagga
      601 gctcctagat acagtcttag tgaatctggt gcctgctcat aagaacttaa acaagcaagc
      661 gtatgatttg gcaaaggcgt tgctgaagag gaccgctcaa gctattgaac cctatattac
      721 caattttttt aatcaggttc tgatgcttgg gaaaacatct atcagtgatt tgtctgagca
      781 tgtctttgat ttgatcttgg aactctacaa cattgacagc catttgctgc tttctgttct
      841 gccccagctt gagtttaaat taaagagcaa tgacaatgaa gaacgcctcc aggttgttaa
      901 actcctggca aaaatgtttg gggcaaagga ctcagaattg gcctctcaaa acaaaccact
      961 ctggcagtgc tacttgggca ggttcaatga catccatgtg ccaatacgcc tggaatgtgt
     1021 gaagtttgcc agccactgcc tcatgaacca tcccgattta gcaaaggatt taacagagta
     1081 tcttaaagtg aggtcacacg accctgaaga agctattaga catgatgtca ttgtgtctat
     1141 agtaacagct gctaaaaagg acattcttct tgtcaacgat cacctactca actttgtgag
     1201 agagcgaacg ttggacaaac ggtggagagt acgcaaagaa gccatgatgg gacttgccca
     1261 gatttacaag aaatacgctt tacagtcagc ggctggcaag gacgctgcca agcagatatg
     1321 ctgggtcaag gacaagctgc tgcatatata ctatcagaac agcattgatg accggttgct
     1381 tgttgagcgg atctttgctc agtacatggt tcctcacaac ttggaaacta cggagcggat
     1441 gaagtgcttg tactacttgt atgctaccct ggacctgaat gccgtgaagg cattgaatga
     1501 aatgtggaaa tgtcaaaatc tactccgaca tcaagtaaag gatttgcttg atttaattaa
     1561 acaaccaaaa acagatgcca gtgtcaaggc catattttct aaagtgatgg ttattacaag
     1621 aaatttgcca gatcctggta aggcccagga cttcatgaag aaattcacac aagtgttgga
     1681 agatgatgag aaaatacgga aacagctgga ggcccttgtt agccctacat gctcctgcaa
     1741 gcaggctgaa ggctgtgtgc gtgaaataac taagaagctg ggaaacccta aacagcctac
     1801 gaaccccttc ttggagatga tcaagttcct cctggagagg atagcccctg tgcacattga
     1861 cactgagtct atcagcgctc ttatcaagca ggtgaataag tcgatagatg ggacagcaga
     1921 tgatgaggac gagggcgtcc ccacagatca ggctatccgc gcgggcctcg agctgctgaa
     1981 ggtgctgtct tttacacacc ctatctcatt ccactctgcc gagacgtttg aatccctgct
     2041 ggcttgtctg aagatggatg atgaaaaggt ggcggaagct gccctacaaa ttttcaaaaa
     2101 cacaggaagc aaaatcgaag aggatttccc tcacatcaga tcagccttgc ttcctgtcct
     2161 acatcacaaa tccaaaaaag gaccacctcg tcaggccaag tacgccatcc actgcattca
     2221 tgccatattt tccagtaaag agacccagtt tgcacagata tttgagcctc tgcataaaag
     2281 cctggacccc agcaacctgg agcacctgat caccccgctg gtcaccattg gtcacatcgc
     2341 tctgctcgcg cctgatcagt tcgctgcccc actcaagtcc ttggtagcaa ctttcattgt
     2401 gaaggacctt ctcatgaacg atcggcttcc aggaaaaaag acaactaagc tttgggttcc
     2461 tgatgaagaa gtctcccctg agacaatggt caaaattcag gctattaaga tgatggttcg
     2521 ctggctgctc ggaatgaaaa ataatcacag taaatcagga acttccaccc tcagattact
     2581 aactacgata ctgcatagtg atggggactt gacagaacaa gggaaaatta gtaaaccgga
     2641 catgtcccgc ctgagacttg ctgctgggag tgctattgtg aagctggcgc aagagccctg
     2701 ttaccacgag atcatcacac tggagcagta ccagctgtgc gcactggcca tcaatgacga
     2761 gtgctatcaa gtcaggcagg tgtttgctca gaaacttcac aaaggcctct cccgcttacg
     2821 gctcccacta gagtacatgg ccatctgtgc tctctgtgcc aaagacccgg tgaaagagcg
     2881 gagagcgcat gccaggcagt gcctggtgaa gaacatcact gtgaggaggg agtacctgaa
     2941 gcagcacgcg gctgttagtg atgcctttgg tttgttctgg agatattgat ggctaaaaat
     3001 gaaaacaaca gccatgcatt tatcagaaag atggtagaaa atattaaaca gacaaaagat
     3061 gctcaaggac cagatgatac aaaaa
//
