LOCUS       XM_039091918            6843 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PDS5 cohesin associated factor A
            (Pds5a), transcript variant X2, mRNA.
ACCESSION   XM_039091918
VERSION     XM_039091918.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091918.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6843
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6843
                     /gene="Pds5a"
                     /gene_synonym="RGD1307094; Scc-112"
                     /note="PDS5 cohesin associated factor A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 52 ESTs, 2 long SRA reads, 6 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 47 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:305343"
                     /db_xref="RGD:1307094"
     CDS             412..4416
                     /gene="Pds5a"
                     /gene_synonym="RGD1307094; Scc-112"
                     /codon_start=1
                     /product="sister chromatid cohesion protein PDS5 homolog A
                     isoform X1"
                     /protein_id="XP_038947846.1"
                     /db_xref="GeneID:305343"
                     /db_xref="RGD:1307094"
                     /translation="MDFTQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRL
                     KMVVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAP
                     EAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCN
                     EIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKN
                     LNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDP
                     HLLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDI
                     HVPVRLESVKFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLA
                     LVNDQLLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAGKEAAEKVSWIKDKLL
                     HIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQ
                     NMLRSHVRELLDLHKQPTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVLGDDE
                     KLRSQLELLISPTCSCKQADICVREIARKLANPKQPTNPFLEMVKFLLERIAPVHIDS
                     EAISALVKLMNKSIEGTADDEEEGVSPDSAIRSGLELLKVLSFTHPTSFHSAETYESL
                     LQCLRMEDDKVAEAAIQIFRNTGHKIETDLPQIRSTLIPILHQKAKRGTPHQAKQAVH
                     CIHAIFSNKEVQLAQIFEPLSRSLNADVPEQLITPLVSLGHISMLAPDQFASPMKSVV
                     ANFIVKDLLMNDRSTGEKNGKLWSPDEEVSPEVLAKVQAIKLLVRWLLGMKNNQSKSA
                     NSTLRLLSAMLVSEGDLTEQKRISKSDMSRLRLAAGSAIMKLAQEPCYHEIITPEQFQ
                     LCALVINDECYQVRQIFAQKLHKALVKLLLPLEYMAIFALCAKDPVKERRAHARQCLL
                     KNISIRREYIKQNPMATEKLLSLLPEYVVPYMIHLLAHDPDFTRSQDVDQLRDIKECL
                     WFMLEVLMTKNENNSHAFMKKMAENIKLTRDAQSPDEAKTNEKLYTVCDVALCVINSK
                     SALCNADSPKDPVLPMKFFTQPEKDFSNDKSYISEETRVLLLTGKPKPTGVLGTVNKP
                     LSATGRKPYVRSAGTETGSNINASSELSPSAGNRSSREQSSEASETGVSENEENPVRI
                     ISVTPVKSIDTVKNKEINSDQSTQGNISSDRGKKRIVTAAGAENIQQKPDEKADESGP
                     PAPSKPRRGRRPKSESQGNATKNDDLSKPVSKGRKRAAGSQESLEAGNAKAPKLQDGA
                     KKAVPAERQIDLQR"
ORIGIN      
        1 ccgccgggct cggttgctga agttacggaa caaaatgtga agtgcggagc cgggtcctcc
       61 gcttcctggc tcggggctcg ggccgcgggc ggctggcggg ggtggccggc tggccggaga
      121 gggacggccg cgcggcgggg acgccggggg cccagggctg ggcacggcca cggcgttctg
      181 ctcctgggcg ccgacgccgc gcgtgggtcc tcttgggtac ctagttttgc ggcctaagct
      241 gaaccctcta ggcctcgagt ctcctttccc ggaggtgacc ggccaggcgg ggaccgggcc
      301 gcttctcctg agccgagctg gggccgttgg gtccgagctg acccccggag gccaccaaac
      361 ttccgaccta gaggccggta gaggactgtg aaagaaaagt tatcccccag gatggacttc
      421 acgcagccga agcctgccac ggccctctgt ggcgtcgtga gtgcggacgg gaagatcgct
      481 taccctccgg gagtaaaaga gatcacggac aagatcacca ccgacgaaat gatcaaacgt
      541 ttgaagatgg tagtgaaaac ttttatggat atggatcagg attcagaaga tgaaaaacaa
      601 cagtatctcc cactagcctt gcatcttgca tctgaattct ttctcaggaa ccctaataaa
      661 gatgtgcgcc ttcttgtagc ttgttgtttg gctgatatat ttcgaatcta tgccccagaa
      721 gctccataca cttcccacga taaacttaag gacatatttc tctttattac cagacaatta
      781 aaaggtttgg aggatacaaa gagtccacag tttaatagat atttttattt attagagaat
      841 ttagcttggg ttaaatcata taacatctgc tttgaattgg aagattgcaa tgaaattttt
      901 attcagcttt ttaggactct cttctcagta atcaacaata gccacaataa gaaggtacaa
      961 atgcacatgt tagacttgat gagttctatc atcatggaag gtgatggagt tactcaagaa
     1021 ttattggatt ccattcttat caatctcatc cctgcacaca agaacttaaa taaacagtcc
     1081 tttgaccttg cgaaagttct gttgaaaagg acagtccaga ctattgaagc atgtattgcc
     1141 aattttttca atcaagtgct ggtgctgggc agatcatcag tcagtgatct ctccgaacac
     1201 gtatttgatc tgattcagga actttttgct atagatcctc atttattgtt atctgtcatg
     1261 ccacagcttg aattcaaact gaagagcaat gacggtgagg agcggctagc tgtggtgcga
     1321 ctactagcaa aattgtttgg ctctaaagat tcagatttag caacacagaa tcggcctctt
     1381 tggcagtgct ttcttgggcg atttaatgac attcatgttc ctgtgaggtt agaaagtgtg
     1441 aagtttgcca gtcactgttt aatgaatcac cctgatttag caaaagatct cacagaatat
     1501 ttaaaagtta ggtcacatga tccggaagaa gccattcgtc atgatgtcat tgttactata
     1561 ataacagctg ccaaaagaga ccttgcctta gtaaatgatc agttgcttgg ctttgtcagg
     1621 gaaaggacac tggataaacg gtggcgagta agaaaagaag ccatgatggg tctggctcaa
     1681 ctctataaga aatactgtct tcatggtgaa gcaggaaagg aagctgcaga gaaagtcagt
     1741 tggataaagg acaaacttct acacatctat tatcagaata gcattgatga caaactgttg
     1801 gtagagaaaa tctttgctca gtatcttgtt ccccataacc tggaaacaga agagagaatg
     1861 aaatgcttat attatttata tgctagcttg gatccaaatg ctgtaaaagc tctcaatgaa
     1921 atgtggaagt gtcagaatat gcttcggagt cacgtgcggg aactgttgga cttgcacaag
     1981 cagcctacat cggaggctaa ctgttctgcc atgtttggga aactgatgac catagcaaag
     2041 aatttgcctg accctgggaa agcacaagat tttgtaaaga aatttaacca ggttcttggt
     2101 gatgatgaaa aactgaggtc tcagttggaa ttattaatca gcccaacctg ttcatgcaag
     2161 caagctgaca tttgtgtgag ggaaatagct cggaaacttg caaatcctaa gcagccaacc
     2221 aacccctttc tagagatggt caagtttctg ctggaaagaa tcgctcctgt gcacattgat
     2281 tcagaagcca taagtgcact agtgaaactg atgaacaagt cgatagaagg gacagccgat
     2341 gatgaagagg agggtgtcag tccagactca gccattcgct cagggcttga gcttcttaag
     2401 gttctgtctt tcacacatcc tacctcgttc cactctgcag agacgtatga gtccttgtta
     2461 cagtgcctaa gaatggagga cgacaaggta gcggaagcag caatacagat ttttagaaac
     2521 acaggccaca aaatagagac tgaccttccc cagatacggt caaccttgat ccccatttta
     2581 catcagaaag ccaagcgggg cactcctcac caagcaaagc aggctgtgca ctgcatccat
     2641 gccatcttct caaacaagga agtccagttg gcacagattt ttgagccact cagtcggagt
     2701 ctgaatgctg atgtaccaga gcaacttata actccattag tttcactggg ccacatttcc
     2761 atgttagcac cagatcagtt tgcctcccca atgaaatctg tagtggcaaa cttcattgtt
     2821 aaggatcttc taatgaatga caggtcaaca ggtgagaaga atggaaaatt atggtctccg
     2881 gatgaggaag tatctcctga agtgctagca aaggtacagg caattaaact tctggtaagg
     2941 tggctgttgg gtatgaagaa caatcagtcc aaatctgcca actcaactct gcggctgtta
     3001 tcagccatgc tggtcagtga gggggacctg acagagcaga agaggatcag taaatctgat
     3061 atgtctcgct tgcgattagc tgctggtagt gccataatga agcttgctca ggaaccttgc
     3121 taccatgaaa ttattacccc agaacagttt cagctctgtg cactggttat taacgatgag
     3181 tgctaccaag taaggcagat atttgcccag aagcttcata aagcccttgt gaagttactt
     3241 ctcccattgg agtatatggc gatctttgct ttgtgtgcca aagatcctgt gaaggaaaga
     3301 agagcacatg ctcgccagtg tttattaaag aacatcagca tacgcaggga gtacattaaa
     3361 cagaacccca tggctactga gaagttatta tcattgctgc ctgaatatgt ggttccatat
     3421 atgattcacc tgctagccca tgatcctgat tttacaagat cacaagatgt tgatcaactt
     3481 cgtgatataa aagagtgcct gtggtttatg cttgaagttt taatgacaaa gaatgagaac
     3541 aacagccatg cattcatgaa gaagatggca gagaatatca agctgaccag agacgcccag
     3601 tctccagatg aagccaagac aaatgaaaaa ctttatacag tttgtgatgt ggctctgtgt
     3661 gttataaata gtaagagtgc tttgtgcaat gcagactcac caaaggaccc agtcctccca
     3721 atgaaattct ttacacaacc tgaaaaggac ttctctaatg acaaaagcta tatttcggaa
     3781 gagacaagag ttcttctgtt gacaggaaag ccaaagccta ctggagtact aggtacagta
     3841 aacaagccct tatcagcaac gggaaggaag ccttatgtta ggagtgccgg cacagagact
     3901 ggaagcaata ttaacgccag ttcagagctg agtccttcgg ccggaaatcg ttcaagtagg
     3961 gaacagagtt cagaggcatc agaaactgga gttagtgaaa atgaggagaa tcctgtgaga
     4021 ataatttctg tcacacctgt aaagagtatt gatacggtaa agaataagga aattaattct
     4081 gatcagtcta cccaaggcaa catcagcagt gaccgaggaa agaaaagaat tgtaacagca
     4141 gctggtgctg agaatatcca acaaaaacca gatgagaaag cagatgagtc aggaccccct
     4201 gccccttcca aacccaggag aggacgtcgc cccaaatctg aatctcaggg caatgcaacc
     4261 aaaaacgatg atctaagtaa acctgttagc aagggaagga agagagctgc aggcagccag
     4321 gagagtctgg aggcaggcaa tgccaaagcg cccaagctac aagatggagc caaaaaggca
     4381 gttcccgccg agagacaaat tgatttacaa aggtaaaagg agaaaatgaa ggccaaacag
     4441 aagcagattc caggttctat aaaaacttgg atccaatgtc cccaaacaga aaacgaagct
     4501 cacttcaaat acacactttc tgccttgaaa actgaacgaa gctagccttc ctttttacac
     4561 agccacagtc ctctggtgga aatgtacagc agagactctg gagaggctaa gagcatctct
     4621 gttcccttcc cccagacttt tcctgtgaga agtcaataat taagcaaatt gcttaacact
     4681 tggttccagg tcctgcatac ctggaactta aaggcatagt aaccattttt ccatgctgca
     4741 ggtttcattg tagagagaga ggaacaaggt gtccttacac tgacgcgaag aactgatcca
     4801 tcctaaagcc tagagcccca tgccgcaccg gagagcaggt gtctactgac ctgagcttta
     4861 cagagtgaga gcacatggta tatgtctttc tttcctttgg aaatttgtgt attattcttt
     4921 ctgcctgtct acttttctgc aaaaatgaga tgtacagatt cctgtcccgc tgtgaaaagt
     4981 aatgtggcaa ttttaagtcg ctttctgatt tttatcagaa tgagaaaata attaaaatta
     5041 ttattgatct ccaagtagta aacacttcat attatgattt ctcccatttt aatataattt
     5101 gcaataaatg tacatattgt ttcataaggc atatcacttt aaaatggttt ttactccttt
     5161 gattataatg gaataattgg gggtttcagg gagtaaagac tgtccaggat ttgattttat
     5221 aatttttgtc accagatttt tattattaat gtaaagaggt tggttttgtt tttttagggt
     5281 ttgttttgtt ttttagaagt ataagtagat ggacactggc agcttcgtga ggatcggaga
     5341 tgtgcagaga ggctctcaat ctagcaccat gctgttggga aataggcatt tatttttgtc
     5401 tgataattgg ggctcaattt ttatttttat tttacagaca actgttacat caatattgta
     5461 ttccttggca ttcattgttc agcatagata gtgtgtacac tatttctgtg cacataatcc
     5521 tatttaattt tttgcatata ataaatgctt ttagatgtct tacggaagga agtcttatct
     5581 ttttatcaca ctttactttc ttaggaatgt ttatatgaaa gggctaagtc ccaggagtgc
     5641 acgactgtag ccgactctcc cttacctatg caaagtaggg tggggcctca ggacctccat
     5701 tcgtattgac cacagacata cgattaacga ggcatgtgca gaatgaggag aagtttgaaa
     5761 tgaatttttc tctaatcctc agaccttttg cctgtttcca ctgtttccac ttggcttgta
     5821 cctacagtcc tagtaggata tgctgctctg tttgtattct gactcggtca gtcttcatgg
     5881 gtatgcaaag tctttgagaa tcagaatcct ccggaatgaa attcactgac agcaatgtca
     5941 gttgggttct catagataat tgagagttga ctgtcacttg actctgggtg aaaggtgggc
     6001 ttcttttaag tactatactg tgcatgtgta ggtgtcagaa gatggctaga gaacagtgaa
     6061 taccaatgag agaaacaata tttcttgaaa gggcacaaag ccctgctctt cctgttgcct
     6121 ccagtctgct gacagcatct atgcataccg tcagtcaggt ccctcattca gtcagtgtgc
     6181 tatattccat ttacaagact tagggccacc agtttgtcac caccaaaact tcattgctgg
     6241 aatccagtga actctgtgtt gagcacttag tcacaaagta taaggaagaa ggttcctgag
     6301 tgttaagggc actcctcaaa atagagcaga accattctca tctgtcgcca ctctgtggag
     6361 ttttgcattg aagcagtcac tgtcggggtc tgttcctcat gggcatggtc tctggcacta
     6421 agagtgaatt ggttggggac tgagcaaaat agagagggac ttgtttactg gaaatgtgtc
     6481 aagttttctt tgaaaaagaa aatgtaaagt ctcttaggaa tttggtatta catctcagag
     6541 aaatacaaca caaaagtgca gacttatatt tgagaattaa tgttaaccct ttgtgtctag
     6601 tttgaagctt cttgtatttg tctaaaacta caagccagaa ttttgtatct cctttgataa
     6661 aaagtgtgta taatgtaaag tagttttgca tattcttgtg ctgcacatgg gctggatttt
     6721 tagaattttt ttaaagactt taagccgaac cttgtaattt gtgtaaatga caagtgtaaa
     6781 atccttccat aaaatgctta aaaatatgca ctgtttgaaa taaaaccgag aaatgcagca
     6841 cta
//
