LOCUS       XM_008770154            6526 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus PDS5 cohesin associated factor A
            (Pds5a), transcript variant X4, mRNA.
ACCESSION   XM_008770154
VERSION     XM_008770154.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_008770154.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6526
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6526
                     /gene="Pds5a"
                     /gene_synonym="RGD1307094; Scc-112"
                     /note="PDS5 cohesin associated factor A; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 46 ESTs, 2 long SRA reads, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 49 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:305343"
                     /db_xref="RGD:1307094"
     CDS             182..4099
                     /gene="Pds5a"
                     /gene_synonym="RGD1307094; Scc-112"
                     /codon_start=1
                     /product="sister chromatid cohesion protein PDS5 homolog A
                     isoform X3"
                     /protein_id="XP_008768376.1"
                     /db_xref="GeneID:305343"
                     /db_xref="RGD:1307094"
                     /translation="MDFTQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRL
                     KMVVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAP
                     EAPYTSHDKLKNLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDL
                     MSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFN
                     QVLVLGRSSVSDLSEHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERLAVVRLL
                     AKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDLAKDLTEY
                     LKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLLGFVRERTLDKRWRVRKEAMMGL
                     AQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLET
                     EERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELLDLHKQPTSEANCSAMFGK
                     LMTIAKNLPDPGKAQDFVKKFNQVLGDDEKLRSQLELLISPTCSCKQADICVREIARK
                     LANPKQPTNPFLEMVKFLLERIAPVHIDSEAISALVKLMNKSIEGTADDEEEGVSPDS
                     AIRSGLELLKVLSFTHPTSFHSAETYESLLQCLRMEDDKVAEAAIQIFRNTGHKIETD
                     LPQIRSTLIPILHQKAKRGTPHQAKQAVHCIHAIFSNKEVQLAQIFEPLSRSLNADVP
                     EQLITPLVSLGHISMLAPDQFASPMKSVVANFIVKDLLMNDRSTGEKNGKLWSPDEEV
                     SPEVLAKVQAIKLLVRWLLGMKNNQSKSANSTLRLLSAMLVSEGDLTEQKRISKSDMS
                     RLRLAAGSAIMKLAQEPCYHEIITPEQFQLCALVINDECYQVRQIFAQKLHKALVKLL
                     LPLEYMAIFALCAKDPVKERRAHARQCLLKNISIRREYIKQNPMATEKLLSLLPEYVV
                     PYMIHLLAHDPDFTRSQDVDQLRDIKECLWFMLEVLMTKNENNSHAFMKKMAENIKLT
                     RDAQSPDEAKTNEKLYTVCDVALCVINSKSALCNADSPKDPVLPMKFFTQPEKDFSND
                     KSYISEETRVLLLTGKPKPTGVLGTVNKPLSATGRKPYVRSAGTETGSNINASSELSP
                     SAGNRSSREQSSEASETGVSENEENPVRIISVTPVKSIDTVKNKEINSDQSTQGNISS
                     DRGKKRIVTAAGAENIQQKPDEKADESGPPAPSKPRRGRRPKSESQGNATKNDDLSKP
                     VSKGRKRAAGSQESLEAGNAKAPKLQDGAKKAVPAERQIDLQR"
ORIGIN      
        1 ggggcgggcg ggcggcggcg gcggcggcgg cgggacccac ggagccgctt tgtgtgcagc
       61 ccgacgaggg gcggcggcgg cggcgcaacc acctgacaga ggcccggcgc tcgctgcacc
      121 gtccgtccgc atgaggagga gaggccggta gaggactgtg aaagaaaagt tatcccccag
      181 gatggacttc acgcagccga agcctgccac ggccctctgt ggcgtcgtga gtgcggacgg
      241 gaagatcgct taccctccgg gagtaaaaga gatcacggac aagatcacca ccgacgaaat
      301 gatcaaacgt ttgaagatgg tagtgaaaac ttttatggat atggatcagg attcagaaga
      361 tgaaaaacaa cagtatctcc cactagcctt gcatcttgca tctgaattct ttctcaggaa
      421 ccctaataaa gatgtgcgcc ttcttgtagc ttgttgtttg gctgatatat ttcgaatcta
      481 tgccccagaa gctccataca cttcccacga taaacttaag aatttagctt gggttaaatc
      541 atataacatc tgctttgaat tggaagattg caatgaaatt tttattcagc tttttaggac
      601 tctcttctca gtaatcaaca atagccacaa taagaaggta caaatgcaca tgttagactt
      661 gatgagttct atcatcatgg aaggtgatgg agttactcaa gaattattgg attccattct
      721 tatcaatctc atccctgcac acaagaactt aaataaacag tcctttgacc ttgcgaaagt
      781 tctgttgaaa aggacagtcc agactattga agcatgtatt gccaattttt tcaatcaagt
      841 gctggtgctg ggcagatcat cagtcagtga tctctccgaa cacgtatttg atctgattca
      901 ggaacttttt gctatagatc ctcatttatt gttatctgtc atgccacagc ttgaattcaa
      961 actgaagagc aatgacggtg aggagcggct agctgtggtg cgactactag caaaattgtt
     1021 tggctctaaa gattcagatt tagcaacaca gaatcggcct ctttggcagt gctttcttgg
     1081 gcgatttaat gacattcatg ttcctgtgag gttagaaagt gtgaagtttg ccagtcactg
     1141 tttaatgaat caccctgatt tagcaaaaga tctcacagaa tatttaaaag ttaggtcaca
     1201 tgatccggaa gaagccattc gtcatgatgt cattgttact ataataacag ctgccaaaag
     1261 agaccttgcc ttagtaaatg atcagttgct tggctttgtc agggaaagga cactggataa
     1321 acggtggcga gtaagaaaag aagccatgat gggtctggct caactctata agaaatactg
     1381 tcttcatggt gaagcaggaa aggaagctgc agagaaagtc agttggataa aggacaaact
     1441 tctacacatc tattatcaga atagcattga tgacaaactg ttggtagaga aaatctttgc
     1501 tcagtatctt gttccccata acctggaaac agaagagaga atgaaatgct tatattattt
     1561 atatgctagc ttggatccaa atgctgtaaa agctctcaat gaaatgtgga agtgtcagaa
     1621 tatgcttcgg agtcacgtgc gggaactgtt ggacttgcac aagcagccta catcggaggc
     1681 taactgttct gccatgtttg ggaaactgat gaccatagca aagaatttgc ctgaccctgg
     1741 gaaagcacaa gattttgtaa agaaatttaa ccaggttctt ggtgatgatg aaaaactgag
     1801 gtctcagttg gaattattaa tcagcccaac ctgttcatgc aagcaagctg acatttgtgt
     1861 gagggaaata gctcggaaac ttgcaaatcc taagcagcca accaacccct ttctagagat
     1921 ggtcaagttt ctgctggaaa gaatcgctcc tgtgcacatt gattcagaag ccataagtgc
     1981 actagtgaaa ctgatgaaca agtcgataga agggacagcc gatgatgaag aggagggtgt
     2041 cagtccagac tcagccattc gctcagggct tgagcttctt aaggttctgt ctttcacaca
     2101 tcctacctcg ttccactctg cagagacgta tgagtccttg ttacagtgcc taagaatgga
     2161 ggacgacaag gtagcggaag cagcaataca gatttttaga aacacaggcc acaaaataga
     2221 gactgacctt ccccagatac ggtcaacctt gatccccatt ttacatcaga aagccaagcg
     2281 gggcactcct caccaagcaa agcaggctgt gcactgcatc catgccatct tctcaaacaa
     2341 ggaagtccag ttggcacaga tttttgagcc actcagtcgg agtctgaatg ctgatgtacc
     2401 agagcaactt ataactccat tagtttcact gggccacatt tccatgttag caccagatca
     2461 gtttgcctcc ccaatgaaat ctgtagtggc aaacttcatt gttaaggatc ttctaatgaa
     2521 tgacaggtca acaggtgaga agaatggaaa attatggtct ccggatgagg aagtatctcc
     2581 tgaagtgcta gcaaaggtac aggcaattaa acttctggta aggtggctgt tgggtatgaa
     2641 gaacaatcag tccaaatctg ccaactcaac tctgcggctg ttatcagcca tgctggtcag
     2701 tgagggggac ctgacagagc agaagaggat cagtaaatct gatatgtctc gcttgcgatt
     2761 agctgctggt agtgccataa tgaagcttgc tcaggaacct tgctaccatg aaattattac
     2821 cccagaacag tttcagctct gtgcactggt tattaacgat gagtgctacc aagtaaggca
     2881 gatatttgcc cagaagcttc ataaagccct tgtgaagtta cttctcccat tggagtatat
     2941 ggcgatcttt gctttgtgtg ccaaagatcc tgtgaaggaa agaagagcac atgctcgcca
     3001 gtgtttatta aagaacatca gcatacgcag ggagtacatt aaacagaacc ccatggctac
     3061 tgagaagtta ttatcattgc tgcctgaata tgtggttcca tatatgattc acctgctagc
     3121 ccatgatcct gattttacaa gatcacaaga tgttgatcaa cttcgtgata taaaagagtg
     3181 cctgtggttt atgcttgaag ttttaatgac aaagaatgag aacaacagcc atgcattcat
     3241 gaagaagatg gcagagaata tcaagctgac cagagacgcc cagtctccag atgaagccaa
     3301 gacaaatgaa aaactttata cagtttgtga tgtggctctg tgtgttataa atagtaagag
     3361 tgctttgtgc aatgcagact caccaaagga cccagtcctc ccaatgaaat tctttacaca
     3421 acctgaaaag gacttctcta atgacaaaag ctatatttcg gaagagacaa gagttcttct
     3481 gttgacagga aagccaaagc ctactggagt actaggtaca gtaaacaagc ccttatcagc
     3541 aacgggaagg aagccttatg ttaggagtgc cggcacagag actggaagca atattaacgc
     3601 cagttcagag ctgagtcctt cggccggaaa tcgttcaagt agggaacaga gttcagaggc
     3661 atcagaaact ggagttagtg aaaatgagga gaatcctgtg agaataattt ctgtcacacc
     3721 tgtaaagagt attgatacgg taaagaataa ggaaattaat tctgatcagt ctacccaagg
     3781 caacatcagc agtgaccgag gaaagaaaag aattgtaaca gcagctggtg ctgagaatat
     3841 ccaacaaaaa ccagatgaga aagcagatga gtcaggaccc cctgcccctt ccaaacccag
     3901 gagaggacgt cgccccaaat ctgaatctca gggcaatgca accaaaaacg atgatctaag
     3961 taaacctgtt agcaagggaa ggaagagagc tgcaggcagc caggagagtc tggaggcagg
     4021 caatgccaaa gcgcccaagc tacaagatgg agccaaaaag gcagttcccg ccgagagaca
     4081 aattgattta caaaggtaaa aggagaaaat gaaggccaaa cagaagcaga ttccaggttc
     4141 tataaaaact tggatccaat gtccccaaac agaaaacgaa gctcacttca aatacacact
     4201 ttctgccttg aaaactgaac gaagctagcc ttccttttta cacagccaca gtcctctggt
     4261 ggaaatgtac agcagagact ctggagaggc taagagcatc tctgttccct tcccccagac
     4321 ttttcctgtg agaagtcaat aattaagcaa attgcttaac acttggttcc aggtcctgca
     4381 tacctggaac ttaaaggcat agtaaccatt tttccatgct gcaggtttca ttgtagagag
     4441 agaggaacaa ggtgtcctta cactgacgcg aagaactgat ccatcctaaa gcctagagcc
     4501 ccatgccgca ccggagagca ggtgtctact gacctgagct ttacagagtg agagcacatg
     4561 gtatatgtct ttctttcctt tggaaatttg tgtattattc tttctgcctg tctacttttc
     4621 tgcaaaaatg agatgtacag attcctgtcc cgctgtgaaa agtaatgtgg caattttaag
     4681 tcgctttctg atttttatca gaatgagaaa ataattaaaa ttattattga tctccaagta
     4741 gtaaacactt catattatga tttctcccat tttaatataa tttgcaataa atgtacatat
     4801 tgtttcataa ggcatatcac tttaaaatgg tttttactcc tttgattata atggaataat
     4861 tgggggtttc agggagtaaa gactgtccag gatttgattt tataattttt gtcaccagat
     4921 ttttattatt aatgtaaaga ggttggtttt gtttttttag ggtttgtttt gttttttaga
     4981 agtataagta gatggacact ggcagcttcg tgaggatcgg agatgtgcag agaggctctc
     5041 aatctagcac catgctgttg ggaaataggc atttattttt gtctgataat tggggctcaa
     5101 tttttatttt tattttacag acaactgtta catcaatatt gtattccttg gcattcattg
     5161 ttcagcatag atagtgtgta cactatttct gtgcacataa tcctatttaa ttttttgcat
     5221 ataataaatg cttttagatg tcttacggaa ggaagtctta tctttttatc acactttact
     5281 ttcttaggaa tgtttatatg aaagggctaa gtcccaggag tgcacgactg tagccgactc
     5341 tcccttacct atgcaaagta gggtggggcc tcaggacctc cattcgtatt gaccacagac
     5401 atacgattaa cgaggcatgt gcagaatgag gagaagtttg aaatgaattt ttctctaatc
     5461 ctcagacctt ttgcctgttt ccactgtttc cacttggctt gtacctacag tcctagtagg
     5521 atatgctgct ctgtttgtat tctgactcgg tcagtcttca tgggtatgca aagtctttga
     5581 gaatcagaat cctccggaat gaaattcact gacagcaatg tcagttgggt tctcatagat
     5641 aattgagagt tgactgtcac ttgactctgg gtgaaaggtg ggcttctttt aagtactata
     5701 ctgtgcatgt gtaggtgtca gaagatggct agagaacagt gaataccaat gagagaaaca
     5761 atatttcttg aaagggcaca aagccctgct cttcctgttg cctccagtct gctgacagca
     5821 tctatgcata ccgtcagtca ggtccctcat tcagtcagtg tgctatattc catttacaag
     5881 acttagggcc accagtttgt caccaccaaa acttcattgc tggaatccag tgaactctgt
     5941 gttgagcact tagtcacaaa gtataaggaa gaaggttcct gagtgttaag ggcactcctc
     6001 aaaatagagc agaaccattc tcatctgtcg ccactctgtg gagttttgca ttgaagcagt
     6061 cactgtcggg gtctgttcct catgggcatg gtctctggca ctaagagtga attggttggg
     6121 gactgagcaa aatagagagg gacttgttta ctggaaatgt gtcaagtttt ctttgaaaaa
     6181 gaaaatgtaa agtctcttag gaatttggta ttacatctca gagaaataca acacaaaagt
     6241 gcagacttat atttgagaat taatgttaac cctttgtgtc tagtttgaag cttcttgtat
     6301 ttgtctaaaa ctacaagcca gaattttgta tctcctttga taaaaagtgt gtataatgta
     6361 aagtagtttt gcatattctt gtgctgcaca tgggctggat ttttagaatt tttttaaaga
     6421 ctttaagccg aaccttgtaa tttgtgtaaa tgacaagtgt aaaatccttc cataaaatgc
     6481 ttaaaaatat gcactgtttg aaataaaacc gagaaatgca gcacta
//
