LOCUS       XM_006239338             724 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus podoplanin (Pdpn), transcript variant
            X1, mRNA.
ACCESSION   XM_006239338
VERSION     XM_006239338.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006239338.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006239338.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..724
                     /gene="Pdpn"
                     /gene_synonym="E11; Gp38; OTS-8; RTI40; T1-alpha"
                     /note="podoplanin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 18 ESTs, 5 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 128 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:54320"
                     /db_xref="RGD:61819"
     CDS             227..724
                     /gene="Pdpn"
                     /gene_synonym="E11; Gp38; OTS-8; RTI40; T1-alpha"
                     /codon_start=1
                     /product="podoplanin isoform X1"
                     /protein_id="XP_006239400.1"
                     /db_xref="GeneID:54320"
                     /db_xref="RGD:61819"
                     /translation="MWTAPVLLWVLGSVWFWDSAQGGAIGALEDDLVTPGPGDDMVNP
                     GLEDRIETTDTTGELDKSTAKAPLVPTQPPIEELPTSGTSDHDHKEHESTTTVKAVTS
                     HSTDKKTTHSNRDNAGGETQTTDKKDGLAVVTLVGIIIGVLLAIGFIGGIIIVVMRKI
                     SGRFS"
ORIGIN      
        1 ttgccgactg tgctgagaag ttgccagttg ccaagtttgc tgtgcttgct ccctccgctc
       61 gcattgaaag cccgggcact ctctgtcgct gggactcttg ctcaccgctt gccagcctcc
      121 tccagagctc ttctcggctg ggcctgtggc ttcgaagttt ttttgttttt tcatcttttc
      181 acaacccaca aaaaccacta gctgctgagg ctccaacgag atcaagatgt ggaccgcgcc
      241 agtgttgctc tgggttttgg ggagcgtttg gttctgggac tcagcgcagg gaggggccat
      301 cggtgcgcta gaagatgatc ttgtgacccc gggtccagga gatgacatgg tgaacccagg
      361 tctagaagac agaatagaaa ccacggacac tacaggagaa ctggataagt caactgccaa
      421 ggcgcctctg gtaccaacac agcctcccat tgaggaactg ccgacctcag gaacctccga
      481 ccacgatcac aaagaacatg agagtacaac cactgtcaaa gcggtgacca gccactccac
      541 ggacaagaaa acaactcact ccaatagaga taacgcaggc ggtgaaacgc agaccacaga
      601 taagaaagat ggcttggctg tagtgaccct ggtcggaatc ataattggcg tcttgttagc
      661 cattggcttc attggaggga tcatcattgt ggttatgagg aagatttctg gaaggttctc
      721 gtaa
//
