LOCUS       NM_001007622            1562 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus PDZ and LIM domain 2 (Pdlim2), mRNA.
ACCESSION   NM_001007622 XM_214229
VERSION     NM_001007622.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Torrado,M., Senatorov,V.V., Trivedi,R., Fariss,R.N. and
            Tomarev,S.I.
  TITLE     Pdlim2, a novel PDZ-LIM domain protein, interacts with
            alpha-actinins and filamin A
  JOURNAL   Invest Ophthalmol Vis Sci 45 (11), 3955-3963 (2004)
   PUBMED   15505042
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC079091.1.
            
            On Nov 29, 2004 this sequence version replaced XM_214229.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC079091.1, AY531526.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p11"
     gene            1..1562
                     /gene="Pdlim2"
                     /note="PDZ and LIM domain 2"
                     /db_xref="GeneID:290354"
                     /db_xref="RGD:1359203"
     exon            1..117
                     /gene="Pdlim2"
                     /inference="alignment:Splign:2.1.0"
     exon            118..212
                     /gene="Pdlim2"
                     /inference="alignment:Splign:2.1.0"
     CDS             120..1169
                     /gene="Pdlim2"
                     /note="alpha-actinins and filamin-interacting protein"
                     /codon_start=1
                     /product="PDZ and LIM domain protein 2"
                     /protein_id="NP_001007623.1"
                     /db_xref="GeneID:290354"
                     /db_xref="RGD:1359203"
                     /translation="MALTVNVVGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLR
                     PGDIIVAINGESAESMLHAEAQSKIRQSASPLRLQLDRSQTASPGQINGEGSLDMLAT
                     RFQGSLRTHHNSQSSQRSACFSPASLSPRPDSPFSTPPPTSPIALSGENVIGCSFQSL
                     THSPGLAATHHLTYPGQPTSQQAGHSSPSDSTVRVLLHSPGRPSSPRLSSLDLEEDSE
                     VFKMLQENRQGRAAPRQSSSFRLLQEALEAEERGGTPAFVPSSLSPKASLPTSRALAT
                     PPKLHTCEKCSVNISNQAVRIQEGRYRHPGCYTCADCGLNLKMRGHFWVGNELYCEKH
                     ARQRYSMPGTLSSQA"
     exon            213..364
                     /gene="Pdlim2"
                     /inference="alignment:Splign:2.1.0"
     exon            365..434
                     /gene="Pdlim2"
                     /inference="alignment:Splign:2.1.0"
     exon            435..586
                     /gene="Pdlim2"
                     /inference="alignment:Splign:2.1.0"
     exon            587..665
                     /gene="Pdlim2"
                     /inference="alignment:Splign:2.1.0"
     exon            666..745
                     /gene="Pdlim2"
                     /inference="alignment:Splign:2.1.0"
     exon            746..873
                     /gene="Pdlim2"
                     /inference="alignment:Splign:2.1.0"
     exon            874..991
                     /gene="Pdlim2"
                     /inference="alignment:Splign:2.1.0"
     exon            992..1530
                     /gene="Pdlim2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cagacggctg cggtggaacg gcggtggctc ctcgtcctta ctccctctgt tcttccctcc
       61 ctctttccct ttcctggcgg gcctggccgc ccagcccaac aggcaagcgg cagccaggca
      121 tggcgttgac tgtgaatgtg gtgggaccag caccttgggg cttccgcatt agcggaggaa
      181 gggatttcca tacacccatc atcgtgacga aggtcacaga gaggggcaag gcggaggcag
      241 ctgatctccg gcctggcgac atcattgtgg ccatcaatgg agagagtgcc gagagcatgc
      301 tacatgcgga ggcccaaagc aagatccgac agagtgcctc acccctaaga ctgcagctgg
      361 accggtccca aactgcctct cctgggcaga tcaatgggga gggctccttg gacatgctgg
      421 caactagatt ccagggctcc ctgaggacac accataacag ccagtcttcc cagagatctg
      481 cctgcttcag cccagcctct ctcagtccca ggccagacag ccctttctcc actccacccc
      541 ctaccagccc aattgccctt tctggagaga atgtgattgg ctgtagtttc cagagtctga
      601 cacactctcc aggtcttgct gctactcacc acttgaccta ccctggccag cccaccagcc
      661 aacaggccgg ccacagcagc ccaagcgact ccacagtgag ggtgctgctt cattccccag
      721 gacgaccctc cagccccagg ttaagcagtt tggacctgga ggaggactca gaggtgttca
      781 agatgctgca ggagaaccgc cagggacggg ctgccccaag gcagtccagc tcttttcggc
      841 tcttacagga agccttggag gctgaggaaa gaggcggcac acctgccttt gtgcccagct
      901 cgctgagtcc caaggcttcc ttgcccacct ccagggcctt ggccacgcca cccaaactcc
      961 acacctgtga gaagtgcagc gtcaacatct cgaaccaggc agtccgcatc caggagggga
     1021 ggtaccgaca ccctggctgc tacacctgtg cagactgcgg gctgaacctg aagatgcggg
     1081 gtcacttctg ggtgggaaac gagttgtact gtgagaagca cgcccgccag cgctactcaa
     1141 tgcctggaac tctcagctct caagcctgag ccaaaaggtg tctgcactct cagactctgc
     1201 agacatgacc atactgagca agcagggaag gggtgataat agcagttgat agaactaagg
     1261 ctgggagtcc cctttgtcct tgctgggtga ggccaagggt tgggactagt ggcagattgc
     1321 tagtgctgag aaaattccac tctctctggc ctttctcctg caggccaggt tctatactac
     1381 agtctgaagt ggccgccata tttgacaagt ttgcatatag ggttgggcac aggtagaagt
     1441 atctagaagg gaaaggtggg cctgaggtta atatattcat ggtatgaagt ttctaacata
     1501 tgaactatat atacatgtgg ctaaaattaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
     1561 aa
//
