LOCUS       NM_001401071            1485 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus peptide deformylase (mitochondrial) (Pdf), mRNA;
            nuclear gene for mitochondrial product.
ACCESSION   NM_001401071 XM_001073696
VERSION     NM_001401071.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1485)
  AUTHORS   Lee,M.D., She,Y., Soskis,M.J., Borella,C.P., Gardner,J.R.,
            Hayes,P.A., Dy,B.M., Heaney,M.L., Philips,M.R., Bornmann,W.G.,
            Sirotnak,F.M. and Scheinberg,D.A.
  TITLE     Human mitochondrial peptide deformylase, a new anticancer target of
            actinonin-based antibiotics
  JOURNAL   J Clin Invest 114 (8), 1107-1116 (2004)
   PUBMED   15489958
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Feb 1, 2022 this sequence version replaced XM_001073696.7.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.38850.1,
                                           SRR26643295.58015.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840116, SAMN16676806
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on single
                                                  protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-554               JAXUCZ010000019.1  51860728-51861281   c
            555-1485            JAXUCZ010000019.1  51859159-51860089   c
FEATURES             Location/Qualifiers
     source          1..1485
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..1485
                     /gene="Pdf"
                     /note="peptide deformylase (mitochondrial)"
                     /db_xref="GeneID:690214"
                     /db_xref="RGD:1582894"
     exon            1..554
                     /gene="Pdf"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..712
                     /gene="Pdf"
                     /EC_number="3.5.1.88"
                     /note="peptide deformylase-like protein-like"
                     /codon_start=1
                     /product="peptide deformylase, mitochondrial precursor"
                     /protein_id="NP_001388000.1"
                     /db_xref="GeneID:690214"
                     /db_xref="RGD:1582894"
                     /translation="MALLGRLLLPAWVTLSRGQSCSSSASLEGAARTRSYWRYLRRLV
                     RGAPQPPYTRVCQVGDPVLRTVAAPVEPKQLAGPELQRLVEQLVQVMRRRGCVGLSAP
                     QLGVPLQVLVLEFPDRLFRAFSPRLRELRQMEPFPLRVLVNPSLRVLDSRLVTFPEGC
                     ESVAGFLACVPRFQAVQISGLDPKGEPVVWSASGWTARIIQHEMDHLHGCLFIDKMDS
                     GTFTNLHWMEVND"
     exon            555..1485
                     /gene="Pdf"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgttttcc tgcaccatgg cgctgctggg caggctgctg ttgccagcgt gggtcactct
       61 gagccggggg cagagttgca gctcatcggc cagtctagag ggcgccgcgc gcacgcgctc
      121 ctactggcgg tacttgaggc gccttgtgcg gggagcgccg cagccgccat atacacgcgt
      181 gtgccaggta ggggatccgg tgctgcgcac cgtggcggcc cctgtggaac ccaagcagct
      241 ggcggggccg gagctgcagc ggctggtgga gcagctggtg caggtcatgc gacggcgtgg
      301 ctgtgtgggc ctgagtgcgc ctcaactggg agtgccgctg caagtgctgg tgctcgagtt
      361 cccggacagg ctcttccgtg ccttctcacc acgcctgcgc gagctgcgtc agatggaacc
      421 ctttccgctt cgtgtgctgg tgaaccccag cctgagggtg ctggacagcc gcttagtcac
      481 cttccccgag ggctgcgaga gtgtcgccgg ctttctggcg tgtgtgcctc gtttccaggc
      541 agtgcagatc tcaggactgg acccaaaagg agagccagtg gtgtggtcag caagtggttg
      601 gacagcccga atcatccagc atgagatgga tcacttgcat ggatgcttgt tcatcgacaa
      661 gatggacagt gggacattta ccaatcttca ctggatggag gtgaatgact gaagctcttc
      721 ttgaattgga atctggaaac ccagcatcca ggccaaggtg gtcacatctt gtgcttcagc
      781 tgggaactgg ctccagtctg acagtaaaca gtggactgac tgctggtgtg tgctggactg
      841 agataagtga tagaaattct tgccctaaaa tcagatctga cggaatgatt acagcacgag
      901 tacagatagc cccttgaagg aggcgcagct acttcctcac agtttcccac ggagagaagt
      961 gggcaggtaa acattctcgg tgcaaatgac ttcgtgagac aacacattct acccccacag
     1021 ccaatgcttg ataagaaggt agtccagata tctgaaagtt ctgttttgtt ttttgggaca
     1081 gggtttctct gtgtaacctt tgctgtccta gaactcactg tgtagaccag gttggccttg
     1141 aactcaaaag atttaactgc ctctgcattc ctgagtgttg ggactgaggt gtgtgggact
     1201 gaggtgtgtc gaactgttgc aagactggaa ggctgtttta aagtgtggtg gcacatcttt
     1261 aactccagtc ctctgtgcgc ggagaggctg atgattgagg atagctaggc acttaggcta
     1321 gagtatttgc tcttgcaaat cactagagtt gaattctgag tgtttacatc agacagctca
     1381 ctgcacctgt aactccagct ccagggagtt gagtgcctcc tcctggcctc cgcaggcact
     1441 gttccctgca cagagatata attaaaatct aaagaacaaa gcgtc
//
