LOCUS       NM_001108806            1136 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus phosphodiesterase 6D (Pde6d), mRNA.
ACCESSION   NM_001108806 XM_001066038 XM_343613
VERSION     NM_001108806.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Hanzal-Bayer,M., Linari,M. and Wittinghofer,A.
  TITLE     Properties of the interaction of Arf-like protein 2 with PDEdelta
  JOURNAL   J Mol Biol 350 (5), 1074-1082 (2005)
   PUBMED   15979089
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Marzesco,A.M., Galli,T., Louvard,D. and Zahraoui,A.
  TITLE     The rod cGMP phosphodiesterase delta subunit dissociates the small
            GTPase Rab13 from membranes
  JOURNAL   J Biol Chem 273 (35), 22340-22345 (1998)
   PUBMED   9712853
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Mar 3, 2021 this sequence version replaced NM_001108806.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.32255.1,
                                           SRR26643286.28997.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-239               JAXUCZ010000009.1  94685680-94685918   c
            240-328             JAXUCZ010000009.1  94645552-94645640   c
            329-454             JAXUCZ010000009.1  94644207-94644332   c
            455-560             JAXUCZ010000009.1  94643226-94643331   c
            561-1136            JAXUCZ010000009.1  94640932-94641507   c
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q35"
     gene            1..1136
                     /gene="Pde6d"
                     /note="phosphodiesterase 6D"
                     /db_xref="GeneID:363272"
                     /db_xref="RGD:1306204"
     exon            1..239
                     /gene="Pde6d"
                     /inference="alignment:Splign:2.1.0"
     CDS             190..642
                     /gene="Pde6d"
                     /EC_number="3.1.4.17"
                     /note="phosphodiesterase 6D, cGMP-specific, rod, delta"
                     /codon_start=1
                     /product="retinal rod rhodopsin-sensitive cGMP
                     3',5'-cyclic phosphodiesterase subunit delta"
                     /protein_id="NP_001102276.2"
                     /db_xref="GeneID:363272"
                     /db_xref="RGD:1306204"
                     /translation="MSAKDERARDILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVE
                     HEARVPKKILKCKAVSRELNFSSAEQMEKFRLEQKVFFKGQCLEEWFFEFGFVIPNST
                     NTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSKVRLFYV"
     exon            240..328
                     /gene="Pde6d"
                     /inference="alignment:Splign:2.1.0"
     exon            329..454
                     /gene="Pde6d"
                     /inference="alignment:Splign:2.1.0"
     exon            455..560
                     /gene="Pde6d"
                     /inference="alignment:Splign:2.1.0"
     exon            561..1136
                     /gene="Pde6d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgactagag ggaaggagaa gggatcagga gcgggagctg aggggaggga gaggccggtt
       61 cgggtctggc cgccaccgct gctcacctga ggtgtccggc cgggctgcga ctgtcctcgg
      121 ttcctgggta ccgtctgcga ggccccgcag agccagcgtg ggagggccgc aggcggcggg
      181 cgccgcatca tgtcagccaa ggacgagcgg gccagggata tcctgagagg cttcaaacta
      241 aattggatga accttcggga tgccgaaaca gggaagatac tctggcaagg aacagaagat
      301 ctgtctgtcc ctggtgtgga acatgaagcc cgtgtgccca agaaaattct caagtgcaag
      361 gcagtgtctc gagaactgaa tttttcttca gcagagcaaa tggaaaaatt ccgccttgaa
      421 caaaaagttt ttttcaaagg acaatgccta gaagagtggt tcttcgagtt tggctttgtg
      481 atccctaact ccacaaacac ctggcagtcc ttgatagaag cagcgcctga gtcccagatg
      541 atgcccgcca gcgtcctgac gggcaacgtc atcatagaga caaagttctt tgacgatgat
      601 cttcttgtca gcacatccaa agtgaggctt ttctacgttt gagagaactt gtgtgcactt
      661 ccaagaatct ggaacagggg caggaggaag ctgtacttgt tcctctgcac atttgatttt
      721 gatactccag ctgattcctt caacacagaa cccacctgtg gcaccaggaa gccagctctg
      781 aaaggcggcc agtcggcttt tctcccaaac ctccatcgtc actgacaaga ctaaactccc
      841 aaccccagcc aagggcaggg aataagcctc aactccttcc tggtgcaaac atgggaacaa
      901 accccgtact cggagccaca ctgcgcctgt cacctgccct gcctcctccc ttgggcccta
      961 taggctttct ttggcctctg gttttgaaaa aaatttacct ttctgaccca tttagttttt
     1021 ttcctaccac ttctatttca tacattctca tacctttaac ttgtaaaata gactatgata
     1081 ttattattac ataatgtaat gaaagcatta aactattcct acagtcttta gcatgc
//
