LOCUS       NM_001399023             884 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus phosducin-like 2 (Pdcl2), mRNA.
ACCESSION   NM_001399023 XM_573585
VERSION     NM_001399023.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Aisha,J. and Yenugu,S.
  TITLE     Characterization of SPINK2, SPACA7 and PDCL2: Effect of
            immunization on fecundity, sperm function and testicular
            transcriptome
  JOURNAL   Reprod Biol 23 (1), 100711 (2023)
   PUBMED   36462395
  REMARK    GeneRIF: Characterization of SPINK2, SPACA7 and PDCL2: Effect of
            immunization on fecundity, sperm function and testicular
            transcriptome.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000014.1.
            
            On Dec 29, 2021 this sequence version replaced XM_573585.8.
            
            ##Evidence-Data-START##
            Transcript exon combination :: MK364795.1, SRR26360172.1786280.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-137               JAXUCZ010000014.1  32228776-32228912
            138-258             JAXUCZ010000014.1  32234711-32234831
            259-349             JAXUCZ010000014.1  32235352-32235442
            350-493             JAXUCZ010000014.1  32241758-32241901
            494-702             JAXUCZ010000014.1  32243057-32243265
            703-884             JAXUCZ010000014.1  32249286-32249467
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p11"
     gene            1..884
                     /gene="Pdcl2"
                     /gene_synonym="RGD1559712"
                     /note="phosducin-like 2"
                     /db_xref="GeneID:498352"
                     /db_xref="RGD:1559712"
     exon            1..137
                     /gene="Pdcl2"
                     /gene_synonym="RGD1559712"
                     /inference="alignment:Splign:2.1.0"
     CDS             132..854
                     /gene="Pdcl2"
                     /gene_synonym="RGD1559712"
                     /codon_start=1
                     /product="phosducin-like protein 2"
                     /protein_id="NP_001385952.1"
                     /db_xref="GeneID:498352"
                     /db_xref="RGD:1559712"
                     /translation="MQDPNEDTEWNEILRNFGILPPKEEPKDEIEEMVLRLQEEAMVK
                     PYEKMTLAQLKEAEDEFDEEDIKAIEIYREKRLQEWKALTKKQKFGELREISGNQYVN
                     EVTNAEKDLWVIIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCIEHYHDNC
                     LPTIFVYKNGQIEGKFIGVIECGGINLKLEELEWKLSQVGAIQTDLEENPKKGIADMM
                     VSSIRNVSIYDSDSSGSDAEAK"
     exon            138..258
                     /gene="Pdcl2"
                     /gene_synonym="RGD1559712"
                     /inference="alignment:Splign:2.1.0"
     exon            259..349
                     /gene="Pdcl2"
                     /gene_synonym="RGD1559712"
                     /inference="alignment:Splign:2.1.0"
     exon            350..493
                     /gene="Pdcl2"
                     /gene_synonym="RGD1559712"
                     /inference="alignment:Splign:2.1.0"
     exon            494..702
                     /gene="Pdcl2"
                     /gene_synonym="RGD1559712"
                     /inference="alignment:Splign:2.1.0"
     exon            703..884
                     /gene="Pdcl2"
                     /gene_synonym="RGD1559712"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agctaccgtt gcacatgcgc agaggtcccg ttcgtgcttg gcctgtcctt ggagcgttag
       61 agaccactgg ccagagctgg ctggttccct ctgccagcct ggaggaagtt tgaggggcac
      121 aagagaacat catgcaggat ccaaatgaag atacagaatg gaatgaaatt ttaaggaatt
      181 ttggcattct tcctccaaaa gaagaaccaa aagatgaaat tgaagagatg gtgttgcgct
      241 tacaggagga agcaatggtt aagccatatg agaagatgac acttgcacag ctgaaagaag
      301 cagaagacga atttgatgaa gaagacataa aagctataga aatatataga gaaaagcggt
      361 tacaggaatg gaaagcactc acgaagaaac aaaaatttgg ggaattgaga gaaatttctg
      421 gaaatcagta tgtaaatgaa gtcacaaatg cagaaaaaga cttgtgggtt ataattcatc
      481 tatacagatc aagtgtccca atgtgtttgg tggttaacca gcatctgagt gtcctagcaa
      541 gaaagtttcc agaaaccaaa tttgttaaag ccatcgtgaa tagctgcatt gaacactacc
      601 atgacaactg tttaccaaca atttttgttt ataaaaatgg tcagatagaa ggcaaattca
      661 ttggagttat agaatgtgga gggataaatc tcaagctaga agaacttgaa tggaaactat
      721 cacaagttgg agcaatacag actgacttgg aagaaaaccc caaaaagggc attgcagata
      781 tgatggtgtc ttccattagg aacgtttcca tctatgacag tgacagctct ggcagtgatg
      841 ctgaggccaa gtagagctgg ttaataaaga gctttacaat aggg
//
