LOCUS       NM_001395644            2440 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus programmed cell death 7 (Pdcd7), mRNA.
ACCESSION   NM_001395644 XM_039081749
VERSION     NM_001395644.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2440)
  AUTHORS   Will,C.L., Schneider,C., Hossbach,M., Urlaub,H., Rauhut,R.,
            Elbashir,S., Tuschl,T. and Luhrmann,R.
  TITLE     The human 18S U11/U12 snRNP contains a set of novel proteins not
            found in the U2-dependent spliceosome
  JOURNAL   RNA 10 (6), 929-941 (2004)
   PUBMED   15146077
REFERENCE   2  (bases 1 to 2440)
  AUTHORS   Park,E.J., Kim,J.H., Seong,R.H., Kim,C.G., Park,S.D. and Hong,S.H.
  TITLE     Characterization of a novel mouse cDNA, ES18, involved in apoptotic
            cell death of T-cells
  JOURNAL   Nucleic Acids Res 27 (6), 1524-1530 (1999)
   PUBMED   10037816
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Jul 27, 2021 this sequence version replaced XM_039081749.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.294922.1,
                                           SRR22582416.1057116.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-946               JAXUCZ010000008.1  74757768-74758713
            947-1085            JAXUCZ010000008.1  74767012-74767150
            1086-1322           JAXUCZ010000008.1  74769124-74769360
            1323-1410           JAXUCZ010000008.1  74769608-74769695
            1411-2440           JAXUCZ010000008.1  74771466-74772495
FEATURES             Location/Qualifiers
     source          1..2440
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..2440
                     /gene="Pdcd7"
                     /note="programmed cell death 7"
                     /db_xref="GeneID:363082"
                     /db_xref="RGD:1308961"
     exon            1..946
                     /gene="Pdcd7"
                     /inference="alignment:Splign:2.1.0"
     CDS             74..1534
                     /gene="Pdcd7"
                     /codon_start=1
                     /product="programmed cell death protein 7"
                     /protein_id="NP_001382573.1"
                     /db_xref="GeneID:363082"
                     /db_xref="RGD:1308961"
                     /translation="MALPPFFAQSRQGPPPPQPPPSAPFSCPPPPLPSPVFPPPLPQR
                     PGPFPGASAPFLQPPIALQPRASAEASRGGGGSGGGGAFFPVPPPPLPPPPQCRPFPG
                     PDVVERPRPPPPGPGPPWSPRWAEAPPPPDVLGDAALQRLRDRQWLEAVFGNPRRPVG
                     PRTPRTPAGPSLGEVRARLRAALRLVRRLRSLGQSLREAEADGAAWVSLHAQAAPLRA
                     ELAERLQPLAQAAYMGEARRRLERVRRRRLRLRERARERETEREAEAAQATEREQEID
                     RWRMKCVQEVEEKKREQELKAAADGVLAEVRKKQSDTKRMVDILRALEKLRKLRKEAA
                     ARKGVCPPAAADETFEHHLQRLRKLIKKRSELYEAEERALRVMLEGEQEEERRRELEK
                     KQRKEKEKLLLQKREIESKLFGDPDEFPLAHLLEPFRQYYLQAEHSLPALIQIRHDWD
                     QYLVPSDHPKGNSIPQGWVLPPLPSNDIWATAVQLH"
     exon            947..1085
                     /gene="Pdcd7"
                     /inference="alignment:Splign:2.1.0"
     exon            1086..1322
                     /gene="Pdcd7"
                     /inference="alignment:Splign:2.1.0"
     exon            1323..1410
                     /gene="Pdcd7"
                     /inference="alignment:Splign:2.1.0"
     exon            1411..2440
                     /gene="Pdcd7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 catttccgcc taaaacccgg ataaagaagt acacagatta ctgtcactgc tagccgcagc
       61 actacagaca gacatggccc tgccaccttt cttcgcccag agccgtcagg gaccgccgcc
      121 accgcagcca ccgccttccg ctccattcag ctgtccgccc ccgccgctgc cctctccggt
      181 tttcccgcca cctcttcccc agcgacccgg ccccttcccg ggagcatccg ccccattcct
      241 ccagcctccc atagctctgc agccccgcgc ctcagccgaa gcctctcgcg gcggcggcgg
      301 cagcggcggt ggcggggcct tcttcccggt gccaccccca ccactgccgc cgccgccgca
      361 gtgccggccc ttcccgggac ccgacgtcgt ggagcgtcca cggccaccgc ctccaggccc
      421 ggggccgccc tggagcccgc gctgggctga ggcgccaccg ccgcccgacg tgctcggaga
      481 cgcggccctg cagcgcctgc gcgatcggca gtggctggag gcggtgttcg ggaacccccg
      541 gcggccggtc ggtcccagga ccccgcgcac acccgccggg cctagcctgg gcgaagtgcg
      601 cgcgcggttg cgtgccgctt tgcgcctggt gcggcggcta cgcagcctgg gacagtccct
      661 acgcgaggcg gaggccgacg gggcggcctg ggtctccctg cacgctcagg cggcgccact
      721 gcgagcggag ctagccgagc ggctgcagcc actagcccag gccgcctata tgggcgaggc
      781 gcgacggagg ctggagaggg tccggcgccg ccggctgcgg cttcgcgaga gggcccggga
      841 acgtgagact gagcgggagg cggaggccgc gcaggctacg gaacgggagc aggagattga
      901 ccgctggagg atgaagtgcg tgcaggaagt ggaggaaaag aagcgggaac aagaactcaa
      961 ggcagctgct gatggggtct tagctgaagt aaggaaaaaa caatcagaca ccaaaagaat
     1021 ggtggacatt ctgcgtgcgt tggagaaatt gagaaagctg agaaaagaag ctgcagcaag
     1081 gaaaggggtc tgtcctcctg cggcagcaga tgagaccttt gagcaccacc ttcagcggct
     1141 gaggaagctc attaaaaagc gctctgaatt gtatgaagct gaagagagag ccctccgagt
     1201 tatgctagaa ggagaacagg aggaagagag gagaagagaa ctggaaaaga aacagagaaa
     1261 agagaaagag aaacttctac ttcagaaacg tgaaatcgag tccaagttat tcggggatcc
     1321 agatgagttc ccactcgctc acctcttgga gccgttccgt cagtattacc tccaggctga
     1381 gcactccttg cctgcgctca ttcaaataag gcatgattgg gatcagtacc tggtgccgtc
     1441 tgatcatcct aaaggcaatt ccattcccca aggatgggtc cttcctccgc tccccagcaa
     1501 cgacatctgg gcaactgctg ttcagctgca ttaagtcctc caggagtgtg gtccagcagg
     1561 caagcactgc ccctctagat attggagatg ctatcgtctc agctggagtc ttctgcacag
     1621 cttaaactct atgcggcatc gttgtagccg gaaagcctac ttcttttgtt ctctgccctg
     1681 ggcaggggta cctctggaac caggagattc ataaggttct tccagaaagg gcctagatga
     1741 actgaggtta ttagcatggg ctgtggccct ggctcactaa aatctgcctc tgttttgagg
     1801 ggcttggttc aatgtggcct gctcatttgc tctaggtctg ttgtatgctg ctgggtgagg
     1861 acaggcagca cacttggcta ctcctcgaag gtgttcactg agtggagtta gcagctcctt
     1921 atcttcccac accaactgac ctagttgtgt tagtcccagt tttggtgcag tgggggaagc
     1981 tactactgag gatgatgggg cagtggctgc caggatcact gatggcatag aaccgttgtc
     2041 ctgtggagag cttagaaaac ttgaagagta ccagagccag gttagcttgt gctctgacag
     2101 acagtgcctg ttttcctcat gaaagtgcca gagcaaaagt tctgagggat ctagtcggat
     2161 gaggcctcca agaatagaaa cttttttccc tgtgggactg taatctctgt cacatgatag
     2221 ggctgggtag cttaagcttc taataacatc catgtagtaa aagttgggaa aagagaaact
     2281 atgaataata aattttattt ttatattgat taacaagtgc tattgtgctt ggacatgatc
     2341 agtcatgtgt catgttacgg tttttgattt gctttattct gggttttgtt atttaatttc
     2401 ctaaaagctg aataaatacc atatttgctt ttttgtttga
//
