LOCUS       NM_022595               1221 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus PDGFA associated protein 1 (Pdap1), mRNA.
ACCESSION   NM_022595
VERSION     NM_022595.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1221)
  AUTHORS   Sharma,V.K., Singh,A., Srivastava,S.K., Kumar,V., Gardi,N.L.,
            Nalwa,A., Dinda,A.K., Chattopadhyay,P. and Yadav,S.
  TITLE     Increased expression of platelet-derived growth factor associated
            protein-1 is associated with PDGF-B mediated glioma progression
  JOURNAL   Int J Biochem Cell Biol 78, 194-205 (2016)
   PUBMED   27448842
REFERENCE   2  (bases 1 to 1221)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 1221)
  AUTHORS   Hoffert,J.D., Pisitkun,T., Wang,G., Shen,R.F. and Knepper,M.A.
  TITLE     Quantitative phosphoproteomics of vasopressin-sensitive renal
            cells: regulation of aquaporin-2 phosphorylation at two sites
  JOURNAL   Proc Natl Acad Sci U S A 103 (18), 7159-7164 (2006)
   PUBMED   16641100
REFERENCE   4  (bases 1 to 1221)
  AUTHORS   Moser,K. and White,F.M.
  TITLE     Phosphoproteomic analysis of rat liver by high capacity IMAC and
            LC-MS/MS
  JOURNAL   J Proteome Res 5 (1), 98-104 (2006)
   PUBMED   16396499
REFERENCE   5  (bases 1 to 1221)
  AUTHORS   Seidel,B., Keilhoff,G., Reinheckel,T. and Wolf,G.
  TITLE     Differentially expressed genes in hippocampal cell cultures in
            response to an excitotoxic insult by quinolinic acid
  JOURNAL   Brain Res Mol Brain Res 60 (2), 296-300 (1998)
   PUBMED   9757068
REFERENCE   6  (bases 1 to 1221)
  AUTHORS   Fischer,W.H. and Schubert,D.
  TITLE     Characterization of a novel platelet-derived growth
            factor-associated protein
  JOURNAL   J Neurochem 66 (5), 2213-2216 (1996)
   PUBMED   8780057
REFERENCE   7  (bases 1 to 1221)
  AUTHORS   Shen,L., Huang,K.P., Chen,H.C. and Huang,F.L.
  TITLE     Molecular cloning and characterization of a novel casein kinase II
            substrate, HASPP28, from rat brain
  JOURNAL   Arch Biochem Biophys 327 (1), 131-141 (1996)
   PUBMED   8615683
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Nov 26, 2020 this sequence version replaced NM_022595.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: U26541.1, BC088140.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-40                JAXUCZ010000012.1  14584414-14584453
            41-132              JAXUCZ010000012.1  14587632-14587723
            133-240             JAXUCZ010000012.1  14588999-14589106
            241-362             JAXUCZ010000012.1  14591083-14591204
            363-514             JAXUCZ010000012.1  14592763-14592914
            515-1221            JAXUCZ010000012.1  14593935-14594641
FEATURES             Location/Qualifiers
     source          1..1221
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12p11"
     gene            1..1221
                     /gene="Pdap1"
                     /gene_synonym="Haspp28; PAP"
                     /note="PDGFA associated protein 1"
                     /db_xref="GeneID:64527"
                     /db_xref="RGD:620442"
     exon            1..40
                     /gene="Pdap1"
                     /gene_synonym="Haspp28; PAP"
                     /inference="alignment:Splign:2.1.0"
     CDS             28..573
                     /gene="Pdap1"
                     /gene_synonym="Haspp28; PAP"
                     /note="PAP1; kinase substrate HASPP28; PDGF-associated
                     protein; heat- and acid-stable phosphoprotein of 28 kDa"
                     /codon_start=1
                     /product="28 kDa heat- and acid-stable phosphoprotein"
                     /protein_id="NP_072117.1"
                     /db_xref="GeneID:64527"
                     /db_xref="RGD:620442"
                     /translation="MPKGGRKGGHKGRVRQYTSPEEIDAQLQAEKQKANEEDEQEEGG
                     DGASGDPKKEKKSLDSDESEDEDDDYQQKRKGVEGLIDIENPNRVAQTTKKVTQLDLD
                     GPKELSRREREEIEKQKAKERYMKMHLAGKTEQAKADLARLAIIRKQREEAARKKEEE
                     RKAKDDATLSGKRMQSLSLNK"
     exon            41..132
                     /gene="Pdap1"
                     /gene_synonym="Haspp28; PAP"
                     /inference="alignment:Splign:2.1.0"
     exon            133..240
                     /gene="Pdap1"
                     /gene_synonym="Haspp28; PAP"
                     /inference="alignment:Splign:2.1.0"
     exon            241..362
                     /gene="Pdap1"
                     /gene_synonym="Haspp28; PAP"
                     /inference="alignment:Splign:2.1.0"
     exon            363..514
                     /gene="Pdap1"
                     /gene_synonym="Haspp28; PAP"
                     /inference="alignment:Splign:2.1.0"
     exon            515..1221
                     /gene="Pdap1"
                     /gene_synonym="Haspp28; PAP"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccgccgctg cagccgccgg agccgagatg cctaaaggag gtagaaaggg aggccataaa
       61 ggccgagtga ggcagtatac aagccctgag gagatcgatg cccagctaca ggctgagaag
      121 cagaaggcca acgaagaaga tgaacaagaa gaaggtggag atggggcttc gggtgacccc
      181 aaaaaggaga agaaatctct agactcagat gagagtgaag atgaagatga cgactaccag
      241 caaaagcgaa aaggtgtgga agggctcatt gacattgaga accccaaccg ggtggcacag
      301 acgactaaga aggtgacaca actggatctg gatgggccaa aggaactttc aaggagagaa
      361 cgagaagaaa tagagaagca gaaagcaaaa gagcgctaca tgaaaatgca tttggctggg
      421 aagacggagc aggccaaggc tgatctcgcc cggctggcaa tcatccggaa acagcgggag
      481 gaagcagcaa gaaagaaaga agaagagagg aaagcaaaag atgacgcaac tttgtcagga
      541 aaacgaatgc agtcgctctc cctgaataag taagctggcc tgtgggagga gatgccgggg
      601 gaactgggcc gtgccgccag gacctctgcc atgtctcacc cactctgtgc cctggcgccg
      661 ctgcagcagc ccctacggcc aggagcccct acggcctggg gcctcctctt catcttggca
      721 cagaaattgt tcaggggatg tggggggggc tggggggagg ggcagctgct atctttgaga
      781 cagaaagatg caggacagca tttcatacgt aaccatttga atgtttttgc tgtttttaga
      841 attcgggccc tggtggggtg ggtggggtgc ctgggaagtg gcgtaaggag attccatttg
      901 tccagtagat tgcacgttag tgtggggagg ggggtgtggt gccagcaggc agctgctgtg
      961 ggagttgatg acaaccagcc cagatcatct gggtgctcac tcagaggggc tctcccggag
     1021 cctgtgcctc gaaaggtccg tccgatgaag cctctcctct ccactctgcc cccttcccac
     1081 ctacctggtc agggctagtg cccattttta accctaccca ttgatcattt caagaaacct
     1141 ctggttactg tgcatcaccc agacaagacg tgctcctcaa attcaacttg tatatttggc
     1201 agattaaaca acattatcat a
//
