LOCUS       NM_001329383            4360 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus pecanex 4 (Pcnx4), mRNA.
ACCESSION   NM_001329383
VERSION     NM_001329383.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4360)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1 and BC166574.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single sequence was available for
            the full length of the gene. The genomic coordinates used for the
            transcript record were based on orthologous data.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.29771.1,
                                           SRR26360176.51251.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-181               JAXUCZ010000006.1  96860960-96861140
            182-924             JAXUCZ010000006.1  96869591-96870333
            925-1104            JAXUCZ010000006.1  96884078-96884257
            1105-1619           JAXUCZ010000006.1  96884541-96885055
            1620-1720           JAXUCZ010000006.1  96885267-96885367
            1721-1840           JAXUCZ010000006.1  96885484-96885603
            1841-2108           JAXUCZ010000006.1  96889306-96889573
            2109-4360           BC166574.1         1-2252
FEATURES             Location/Qualifiers
     source          1..4360
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..4360
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /note="pecanex 4"
                     /db_xref="GeneID:690217"
                     /db_xref="RGD:1582892"
     exon            1..181
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
     exon            182..924
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
     CDS             236..3778
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /note="pecanex-like protein C14orf135 homolog;
                     pecanex-like 4; pecanex homolog 4"
                     /codon_start=1
                     /product="pecanex-like protein 4"
                     /protein_id="NP_001316312.1"
                     /db_xref="GeneID:690217"
                     /db_xref="RGD:1582892"
                     /translation="MSPDVPLLNDYKQDFLLKRFPQTVLGGPRLKLGYCAPPYVYVSQ
                     IVLFLMPWALGGTGTLLYQLDILRDYTAAALSGGLMVFTAAVIQLISVYAKSKSVVVK
                     RMITRNILAEEDQHEFTSCAGAETVKFLIPGKKYVANTVFHSVLAGLVCGLGTWYLLP
                     NRVTLLYGSPGATAVLFVFGWITLCIGEYSLIVNTAAETATFQTQDTYEITPLMRPLY
                     IFFFVSVDLAYRFIVGIPALEQANQILHILFVLLPFLWALGTLPPPDALLFWAVEQVL
                     EFGLGGSSMSTHLRLLVMFIISAGAPVASYFIPSTVGAVVFMTGLGFLLSLNPTDLSM
                     VFRCGVARHRVGSRCEAFPGNSGYWFRWKECLLCIAVLGMALLEAGLLHRYASSSQVS
                     RSSAQTVVGYVLMVLLSILWLLRETQSIYIFGIFRNPFYPKDIQAVSVLFDKQSKLLK
                     IGAVRWILLTLVSPLVMVAFLALDSSLHRLHSVSVSIGFSRAFRTVWQNTENALLETV
                     VVSAVHMVSNTDCWWNRSLDTGLRLLMVGIMRDRLVQFLTKVQFAVTVLLASWTEKKQ
                     HRKLTTTLCVLNAIFAPLVLIIIVVSTVLSSPLLPLFTLPVFLVGFPRPVQSWPGAVG
                     TAACVCTDTVFYQQMVPRLTSALQTAMAAGSLGLLVPGSHYLGRFEDRLIWIMILECG
                     YTYCCINVKGLELQETSCHTAEAQRVDEVFESAFQQEHPQVCSLNEHLENVLTPCTVL
                     PVRLYSDARNVLTGIIDSPENLKEFKDDLVKVLVWVLIQHCSKRLSMQENTHRPENKG
                     KSSPVVPPASNSPPCPKSLEDSDSSNSDTVHDWSDSSIFDDEPAIKNRKEKLQLNNLP
                     CTNLPIPGSVDFQSADDHSAGTGPKNDLYRTVMLGLPAVDKGQRADGAYIPLVEFSCS
                     QSRLLSLPEEWRSNCTPRSKIMEMSPLFPEDWYQFVLRQLECFHSEEKSCVLEEIAED
                     TALKDLYIHTVMACYIGLFGKDNGVPSPGQLVRVYNGGLPWSGTLDWLSEKPELFHLV
                     RKAFRYTLKLMVDKASLGPIEDFKELTNCLREYERDWYIGLVSEEQWKEAILEEKPCL
                     FCLGYESSMGVYTSRVLMLQELSVHIGKLNAEAVRGQWANLSWELLYATNDDEERYSI
                     QAHPLLLRNLTVQAADPPLGYPIFSSKPLHIHLY"
     exon            925..1104
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
     exon            1105..1619
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
     exon            1620..1720
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
     exon            1721..1840
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
     exon            1841..2204
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
     exon            2205..2308
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
     exon            2309..3339
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
     exon            3340..3526
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
     exon            3527..4337
                     /gene="Pcnx4"
                     /gene_synonym="Pcnxl4; RGD1566114"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccctgggag gcccgagcgc agttgatgtt agccatggaa accggagcgg tcctggaggc
       61 ctccggtcag ctgctggtgg ggccctcatc cagcctcggg cgagacctcc caacctactt
      121 cagcagggga gatgtggtcc caggacgcgc tctcgtcgcc tctcccctgc ggtgactcca
      181 gatatttctg gttataaaaa agatgtgact cccagacgaa tcctgagtgg gaagtatgag
      241 tccagatgtc cctctgctaa acgattacaa acaggacttc ctgctgaagc gctttccaca
      301 gactgttctc ggaggccctc gactcaaatt aggctactgt gcccctcctt acgtatatgt
      361 cagtcagatt gtccttttcc tgatgccatg ggccctaggc ggaacaggaa cactcctgta
      421 ccaactggac atcctgagag actacacagc agcagctctc tcaggaggac tgatggtgtt
      481 cacagcggct gtcattcagc tcatcagcgt gtacgccaag agcaagtcag tggtggtaaa
      541 gaggatgata accaggaata tcctagcaga ggaagaccag cacgaattta caagttgtgc
      601 tggtgctgag accgtcaaat ttctgattcc tggcaaaaaa tatgtagcca atacagtctt
      661 tcattctgtt cttgctgggc tggtgtgtgg tcttggaaca tggtatttgc tcccaaaccg
      721 agtaaccttg ctgtatggca gccctggggc gactgctgtg ctctttgtct ttgggtggat
      781 aacactttgc ataggagaat actcactcat tgtaaacacc gctgcagaga cagctacatt
      841 ccagacccag gatacttatg aaatcactcc tctcatgaga ccactttata tttttttctt
      901 tgtttctgtg gaccttgcat acaggtttat tgttggtatt ccagctctag agcaagcgaa
      961 tcagattttg cacatcttgt ttgtgttatt gccctttctg tgggcacttg ggactctacc
     1021 cccacctgac gcccttctct tttgggcagt ggagcaggtt ttagagtttg gtcttggggg
     1081 ttcatccatg tcaactcacc tacggttatt ggtcatgttc atcatttcag ccggggcccc
     1141 agtcgcatca tacttcattc ccagcactgt cggagcggtt gttttcatga ctggactcgg
     1201 gttcttactg agtctcaacc caactgactt gagtatggtc ttcaggtgtg gtgtggccag
     1261 gcacagagta ggaagcaggt gtgaggcttt ccccggcaac tcaggatatt ggttccggtg
     1321 gaaggagtgc cttctgtgca ttgctgtgct gggcatggct ctcctagagg ctgggctgct
     1381 gcatcgctat gccagctcct cacaggtctc cagaagcagc gctcagactg tcgtgggcta
     1441 tgttctgatg gtgttacttt caatactgtg gctactgaga gaaactcaaa gcatctacat
     1501 ctttgggatt ttccgaaacc ctttctatcc gaaggatatc caagctgtgt ctgtactctt
     1561 tgacaaacaa agcaagctcc tgaagattgg tgctgtcaga tggattttgc taactctagt
     1621 gtcccctttg gtgatggtgg ccttccttgc actggacagc tccttacaca ggctccactc
     1681 tgtgtctgtc tccattggat tcagcagggc tttcagaacg gtgtggcaga atacagaaaa
     1741 tgctttactg gagactgtgg ttgtatcagc agtgcacatg gtgtccaaca ctgactgctg
     1801 gtggaacagg agccttgata caggactcag actgctgatg gttggtatca tgagagaccg
     1861 tctggttcag ttccttacta aggtgcagtt tgctgtgact gtacttttgg catcatggac
     1921 ggagaagaag cagcatagaa aactgacgac aactttgtgt gttctcaacg ccatatttgc
     1981 tccccttgtg ctgattatta tagttgtctc aacagtgctg tcctctcctc tactgcctct
     2041 cttcacactg cctgttttct tggtggggtt ccctcgtcca gttcagagct ggccaggagc
     2101 agtgggcact gcagcttgtg tgtgcacaga cacggtgttc taccagcaga tggtccccag
     2161 gctgacttca gcactgcaga ctgcaatggc cgctggaagt ttaggtctcc ttgtacctgg
     2221 gtctcattac ttgggccgtt ttgaggatcg tttaatatgg ataatgattc tagagtgtgg
     2281 ctatacttac tgctgcatta atgttaaggg gttagaattg caggaaacat cctgccacac
     2341 tgctgaagcc cagagagttg atgaagtgtt tgaaagtgct ttccagcagg aacacccgca
     2401 agtgtgttcc cttaatgagc acctggagaa cgtcctgacg ccatgtacgg ttttgcccgt
     2461 gagactgtat tctgatgcca ggaatgtcct aactggaata attgattctc ctgaaaactt
     2521 gaaggaattt aaagatgacc ttgttaaggt gcttgtgtgg gtgctaattc agcactgctc
     2581 caaaaggctc agcatgcagg agaatactca cagacctgaa aataagggaa aatcctcacc
     2641 agtggtccca ccagcttcta acagcccacc atgccccaag tccctggaag actcagatag
     2701 ttcaaattca gacactgtcc atgactggtc tgacagtagt atttttgatg atgaaccagc
     2761 tatcaaaaac agaaaagaaa aacttcagct caacaatcta ccttgtacaa atttgcctat
     2821 tccggggtca gtagatttcc agagtgcaga tgaccattct gcaggcactg gtcccaaaaa
     2881 tgatctttac aggacagtca tgttgggact ccctgctgtt gacaaaggac agcgagcgga
     2941 tggggcgtat attcctctcg tggagttcag ttgttcccag tctcgcttgc tgagtttacc
     3001 tgaagaatgg agatctaact gcacaccccg ttccaaaata atggagatga gccccttgtt
     3061 tccagaagac tggtatcagt ttgtcctaag gcaattggaa tgtttccact cagaagaaaa
     3121 gtcatgtgta ctagaagaaa ttgcagagga cacagcttta aaagacttgt atatccacac
     3181 agtgatggct tgttacattg gcttatttgg aaaagacaat ggcgtgccta gtcctggtca
     3241 gctagtaaga gtctacaatg gtggcttgcc ctggtctggc accttggatt ggctctcaga
     3301 aaaaccagag cttttccacc tggttcgaaa agccttcagg tatacactga aactaatggt
     3361 tgataaagca agtttgggtc caatagaaga ctttaaagaa ctgaccaact gcctcagaga
     3421 gtatgagagg gactggtaca tcggcttagt gtcggaagaa cagtggaagg aagcgattct
     3481 agaagaaaag ccgtgtttgt tctgcctggg gtatgagtct agtatgggcg tctacacctc
     3541 gagggtcctg atgcttcagg agctctcagt gcacatcggg aagctgaacg ctgaggctgt
     3601 tcgaggtcag tgggccaacc tctcatggga actgctttat gccaccaatg atgatgagga
     3661 gcgctacagt atccaagctc acccactcct gctgaggaac ctcactgtgc aggccgctga
     3721 ccctccctta ggatatccaa tcttctcttc caaacctctt catatacatt tgtattagtt
     3781 catttcttca tccaaatgca agcacatcag aggaggttct aactgaaaag taggagtgta
     3841 agtgttgtaa tttcccgaga ctctcattgc cccaagaatg cccgagagga aacctaaggt
     3901 ctgcggagct acttctcagc cagttgaatg actcaaacaa cagctcctct gtgtctcaga
     3961 tgggtaaagt cgttggccaa tatttgtgct gtatgaattc tgattggttt tggtacctag
     4021 agaaatttgt acaagattag atggtttttt actgctttgt caaatgtcta aatggtgatg
     4081 tgtcttttaa aaagtgaaca ggtatgtaat tacatagtta aaggacattc atattagtgt
     4141 ttttaaatat taatgggtcc ttttaatggt taacatagca tgtacatata tttatttgaa
     4201 aggtaattaa tgtttggtat tttcgaatat actgttgtag catttaacat ggtgtgaact
     4261 gttccattca ttgtattcat ttttcatata ctttgtttgg aaaccgtaag cacttgaaat
     4321 aaaatctcac cagctaaaaa aaaaaaaaaa aaaaaaaaaa
//
